LOC120552074


Basic Information

Item Value
gene id LOC120552074
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 4525301 ~ 4532240 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039789739.1
GTCAGTCTGAAGTCACACATTAAGATGAACTGAGAGCAAACAAGATGGACAAAGTTCTGCTGCTCACCATGGCTGCATCAGGGCTGAGTGCTGTCTCATCACAAGCTGGACGGCAgtactattttttttatgagcCGAAGAACATGACTGAAGCAAAAACTTACTGCAGAGAGAAATACACAGACCTGGCCACTGTAGACAGCATGGAGGATGTAAAGACCCTGAACAAAATGGCAAATTCAAGCAAAATGTTCTACCCAGGATACCCAACATACTACAACTATCGAGCATGGATAGGACTGTACGATGACGTGAACAGCTGGCGGTGGTCACTGACGAACACAAGTTTCTACAAACCCGGGGAGACGGAGTTCAGACGATGGCAGACTGGGGAACCGAATAATGAGTTCAGTAAAGAACACTGCACACAGATGGGTGTTGATGGGAAATGGAACGACATCAGTTGTGACAGCTCCATGAAGGCAGTCTGTGTACAGGTCAGAGGGCCAGATGTGACTTTTATCCTCACTAACATCTCCATGTCGTGGCCTGCGGCCCAGAACTACTGCAGAAAACAGTACACAGACCTGGCCAGTGTGAGAAACAGCACAGAGAACCAGAAGGTGCAGGACCTGATACCTACTGGAGGAGCAGTCTGGATCGGCCTTTTCAGAGACTCCTGGAAGTGGTCGGATGGAAGTACTTCCTCATTCAAGTACTGGAACACTGGGGAACCCAACAACAAAGCTGGGAACGAGGCTTGTGTGGCTGCAGCTTTCAATCAATCTGGACAATGGGAAGACTGGAACTGTGGCGTCAAGAGAGCATTCATTTGCTTCGGTCCAGtgccTGCTTCAAAGCATGTGATAAGACTGAGTTTGGAGAAGAAGAACTCCCTGGATCTGAACAGCCCTGCTGTGATGGAGGCCATGTTGAAGCAGCTCCAACAGAAGCTGAAGGCCCGGGGGCTGGACGGCAACATCAAACTGAGCTGGAGGAAGCAGGCCGATGGAAAAGTCTTCcacaggaagaagaagaaggatgagCTGTAGTGATCGCTGCttctgttttcatcagagaaaaGTGTGTTTCTTTCCTTAGAGTGCTAACGGACCAGAATAGAGATGTGACAATCAGCTGATTAATCCATTAAGTCGCAACTATTGTAATAATCACTTCATCCTTTTAGTCGTTGGCGATTATGCTAAATATTCACCGCTTCAAGCTTCTCAATAGTGAAGTTTAGATTCTTGTCTTCATGTATGATCATAAACTTCAGCGTTTCCCACAAAATTAGATTCTATTTTGCAGTGGTAGCTGACCCAGATGTGGGGGGTCCACGCGTGGAAAGAGGTGCAGAATTCTTATATTAATTGTACTGCAAATATTTTTGGCAACTTTGTGTAACAGCTTATATAGACAATCTGCCCACAGTCCTATCCTCAAGGCTATAAGGGTGCAGGGGCAGTTACAGCACGCAATGTAATCTTTCTTCagacaataaaaacatatgCTCTTTGACCAAACAAACGATACCACAAGTTGTAATTCTGTTTAACAGCCAGATGCTGTTCTACTATTTGTGACCTTCTGCA

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039789739.1 True 1595 mRNA 0.46 6 4525301 4532240

Neighbor

gene id symbol gene type direction distance location
rsu1 rsu1,LOC102787280 coding downstream 14692 4466851 ~ 4510609 (-)
c1ql3a c1ql3,LOC102786996 coding downstream 69772 4433632 ~ 4455529 (-)
trnas-gcu_30 NA coding downstream 98921 4426299 ~ 4426380 (-)
trnas-gcu_29 NA coding downstream 100601 4424619 ~ 4424700 (-)
trnas-gcu_28 NA coding downstream 103147 4422073 ~ 4422154 (-)
LOC120552070 plppr4,LOC102778844 coding upstream 38177 4570417 ~ 4613727 (-)
trnas-gcu_31 NA coding upstream 265241 4797481 ~ 4797562 (-)
trnas-gcu_32 NA coding upstream 266750 4798990 ~ 4799071 (-)
trnas-gcu_33 NA coding upstream 271465 4803705 ~ 4803786 (-)
trnas-gcu_34 NA coding upstream 272806 4805046 ~ 4805127 (-)
G217935 NA non-coding downstream 58861 4465983 ~ 4466440 (-)
G217905 NA non-coding downstream 262369 4262626 ~ 4262932 (-)
G217884 NA non-coding downstream 346383 4178696 ~ 4178918 (-)
G217828 NA non-coding downstream 620749 3904107 ~ 3904552 (-)
G217818 NA non-coding downstream 651667 3871733 ~ 3873634 (-)
G217960 NA non-coding upstream 33390 4565630 ~ 4566156 (-)
G217971 NA non-coding upstream 86376 4618616 ~ 4618865 (-)
G217976 NA non-coding upstream 228025 4760265 ~ 4762269 (-)
G217977 NA non-coding upstream 254153 4786393 ~ 4786618 (-)
G217988 NA non-coding upstream 358072 4890312 ~ 4890528 (-)
G217837 NA other downstream 583972 3936010 ~ 3941329 (-)
G217780 chchd7,LOC102799933 other downstream 820944 3692952 ~ 3704357 (-)
f3a NA other downstream 1069257 3437802 ~ 3456044 (-)
LOC120552696 NA other downstream 1181596 3315418 ~ 3343705 (-)
svila svil other downstream 1389087 2988926 ~ 3136214 (-)
G218019 NA other upstream 495265 5027505 ~ 5036704 (-)
G218085 LOC107687935 other upstream 1167989 5700229 ~ 5700576 (-)
G218453 adarb2 other upstream 3662689 8194929 ~ 8195879 (-)
G218471 NA other upstream 3898224 8430464 ~ 8430930 (-)
prkdc prkdc other upstream 4265541 8797781 ~ 8851726 (-)

Expression


Co-expression Network