dtx3l1 (LOC104939629)


Basic Information

Item Value
gene id dtx3l1
gene name LOC104939629
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 4362355 ~ 4369344 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039789751.1
ctgtgtcgtgTCATCATGAGCTGAACAGACATCTGAACTCCGGGACTcacagaagagagacagaagccAAGAAGAAAACTTCACTGAGGTGTGGAAAAGAAGCGCATTTCAACAGtaTGGGCTCTGGTCAGAGCAGCGAAAAAGTCTACTGCAACCGCTACCTGAACGGAAAGGGTCCTCCATCACTGGAACAACAAGCTAAGGAAGGGCTGAATGGGATCCCCAGAGGAGTGACTGGCTGCCAGCCACAGGGCCAGATGACCTGGGTGATCCTCCACAGAGACCTGCCGGGATTCCCTGACGACAACACCGTGCAGATCAACTACATATTCCCAGATGGAATACAGACAGAGAAACATCCCCACCCGGGCAACCCTTACGCAGGGCTGCGGCTCTGTGCTTACCTGCCAGACAACCGTGAGGGCAAGAGGGTTCTAAAGCTGCTGGAGAAGGCCTTCAACCAGCAGCTCTTGTTTACTGTCACcaccaacaaagatggaaaggACACGGTCACTACAGCTTCCGTCCCCCTAAAAACACATCCAGATGGAGGGAACAAAGTTGATGGCTACCCAGATTCCGACTACCTGAAAACTGTGAGAAAGCTACTGAGGGATAAAGGCATtgaataacacacaacacacagcgcTGGATGGACAGATGAAGGCAAAAACTGTGCTGAGAACCTGTGCTGTCCATGGTTGTTGTTGTCAATGTGTAATCTgtgtattattacattattgcaGTTCTTATTCTTgaaattaatttattataaCATGTATTGTCAATAGTATAAAGTGATTATTTTACTGTATCAttacaaaaaagtttttttttttgaattcaGAATATGGAGTCATATTATTGTATTTATAGGGCAAAATAATAGTACTGTATGTAGTAAGTAGTAGTGCCTGTATAAGTGAAGTGAATATTACATTTATTCTTAAGTAGTACAGTGAACAATCTAAACTCTAATTATGATACAGACACTTACGTTTTTACAATCCATTTGTTGTGTAAGATTTCATCATACATTATGACAGAATGTCAAGCTTCAGGTCATGAATAGGGTTTAAGTATAATGCTCAATTAAATGATTATTTAAGTAATACTAAACTTATTATGTTTCTTTAATTCATCACAATCTTGTTCTgtctttttccaattttttgttTAATAGATCAAAATCAGAAAACGGTAACTTCACTCGTATCAGTGTTTAGGTGCCATCCAGTCTTAGATAGCAGGCAGTGCAGGGAAtccaaatgtttaaaatgttcagGAATAAATGAGACCGACAACTAGA

Function

NR:

description
E3 ubiquitin-protein ligase DTX3L-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039789751.1 True 1309 mRNA 0.41 5 4362355 4369344

Neighbor

gene id symbol gene type direction distance location
pde1ca pde1c,LOC105910890 coding downstream 55478 4278321 ~ 4306877 (-)
neurod6a LOC107736131 coding downstream 164886 4193845 ~ 4197469 (-)
LOC120552076 NA coding downstream 185812 4166077 ~ 4176543 (-)
cubn cubn coding downstream 201800 4066794 ~ 4160555 (-)
LOC120552072 LOC101479525,LOC102293327 coding downstream 311689 4007899 ~ 4050666 (-)
trnas-gcu_21 NA coding upstream 24945 4394289 ~ 4394370 (-)
trnas-gcu_22 NA coding upstream 35127 4404471 ~ 4404552 (-)
trnas-gcu_23 NA coding upstream 36798 4406142 ~ 4406223 (-)
trnas-gcu_28 NA coding upstream 52729 4422073 ~ 4422154 (-)
trnas-gcu_29 NA coding upstream 55275 4424619 ~ 4424700 (-)
G217905 NA non-coding downstream 99423 4262626 ~ 4262932 (-)
G217884 NA non-coding downstream 183437 4178696 ~ 4178918 (-)
G217828 NA non-coding downstream 457803 3904107 ~ 3904552 (-)
G217818 NA non-coding downstream 488721 3871733 ~ 3873634 (-)
G217817 NA non-coding downstream 517873 3844143 ~ 3844482 (-)
G217935 NA non-coding upstream 96639 4465983 ~ 4466440 (-)
G217960 NA non-coding upstream 196286 4565630 ~ 4566156 (-)
G217971 NA non-coding upstream 249272 4618616 ~ 4618865 (-)
G217976 NA non-coding upstream 390921 4760265 ~ 4762269 (-)
G217977 NA non-coding upstream 417049 4786393 ~ 4786618 (-)
G217837 NA other downstream 421026 3936010 ~ 3941329 (-)
G217780 chchd7,LOC102799933 other downstream 657998 3692952 ~ 3704357 (-)
f3a NA other downstream 906311 3437802 ~ 3456044 (-)
LOC120552696 NA other downstream 1018650 3315418 ~ 3343705 (-)
svila svil other downstream 1226141 2988926 ~ 3136214 (-)
G218019 NA other upstream 658161 5027505 ~ 5036704 (-)
G218085 LOC107687935 other upstream 1330885 5700229 ~ 5700576 (-)
G218453 adarb2 other upstream 3825585 8194929 ~ 8195879 (-)
G218471 NA other upstream 4061120 8430464 ~ 8430930 (-)
prkdc prkdc other upstream 4428437 8797781 ~ 8851726 (-)

Expression


Co-expression Network