c1ql3a (c1ql3,LOC102786996)


Basic Information

Item Value
gene id c1ql3a
gene name c1ql3,LOC102786996
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 4433632 ~ 4455529 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039789753.1
TCCCAACAAAGTGTAGCTCcgctacagttttttttcttcctttaaaGGGTAACCTCTCAGCCAGCAAGATTCCGCCCAAAAGCAGACAGCCGGATCGCGCTGCGCTGACGCGGCTGGTCGGCAGGAAGCGGCTGGTGGCGGCGGGGGTCCTGGGGGTCGTTATGGTCCTGCTGCTGGTCATCCTCATCCCGGTGCTGGTCAACTCCGCGGGCACGGCGGCGCACTACGAGATGCTCGGCACCTGCAGGATGGTGTGCGACCCGTACGGAACCAAGTCCCCGACCAGCACCGCTGCGGCGGACACGGTCCGGGACAGCGGCCTCGTGCAGTCTCTGCCCACTTTTATCCAAGGTCCGAAAGGGGAGCCGGGGCGTCCGGGTAAGGCGGGTCCGAGGGGACCTCCCGGCGAGCCGGGACCGCCCGGTCCAGCGGGGCCACCTGGAGAGAAAGGCGAATCGGGCAGACCGGGTTTACCGGGCCCGCCGGGACCGAGCGCAGCCGCCGGTGCCATCAGCGCGGCCACGTACAGCACCGTGCCCAAGATCGCCTTTTACGCAGGGCTGAAGAAGCAGCACGAGGGCTACGAGCTGCTCAAGTTCGACGACGTGGTGACCAACCTGGGGAACCACTACGACCCCACCACCGGGAAGTTCACGTGCTCCATCCCCGGGATCTATTTCTTCACCTACCACGTCCTGATGCGCGGAGGGGACGGCACGAGCATGTGGGCTGACCTGTGCAAAAACAACCAGGTGCGTGCCAGTGCCATCGCCCAGGATGCGGACCAAAACTATGACTATGCCAGTAACAGCGCTGTGCTGCATCTGGAGCCAGGAGACGAGGTCTACATCAAACTCGACGGAGGCAAAGCGCATGGcggcaacaacaacaagtaCAGCACCTTCTCCGGATTCATCATCTACGCCGACTAGACAGCAACACGTGCTCAGCCCTCAGCTATTACAGGCCTCAGTCTTTCTACAAATCTAACCTTCTACCAATCAGACGCTCAGACTTACTCTTTTAAAACCGTGTGGACAAACCAATATCCAAAATCAGCCTTCATAACCTgcatattatttaatttttctaCATCCTGCTAACATCACTGTCCTAAGTTGCAAGTGactttggacaaaagcatcAGTGAAATGGTTGAATTATGGGATCAAACCATATCCTCTGTTCATACCATTACACATAACAACTTACAGCTGATGTCTTTGTGTTGATGTAGTCGTGTCACCGAGTGATGGTGGTAGGTAGGAGATGAAAGggaggagtgtgtttgtgtatgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtaggaggggggggggcagggggtGGCACAGATTCACCAAACATCAGTAAGATGTAACCTACATGTAGCCTAGTGCTGTTATTTGAGTTATAGGTCCAGGATGAGGTGTTTGTAGAGACATCATTAAGAGGATTGAGTTATCATCATCACTCTTAAATCTGATTGGGCCACAAGCTGCCTGTCAACAGATCGAGCTGTCTGTCTAGAAGTAAGTGGAAAAGATACAAATCTGATAGAAATGCAGTAGCTAGTGGGCAGTTGTAAAAACTGACTGTGGAGGATTTTGTGCAATACTTAGTATAATAAACTATATCCGTGGTGATAATTAACGAGAAAGCCCTCAGTCAGCGTTTGtggtttatttctttcttttctgatATCATGTAGATAGCAAGGTAAAGCTGGCAACACTTGAAGTGCATTAAGATACACTGACAACAGATTATATTTCCCATTATTAACATAATTACCTCTTTTATAGAATAGAATCAATAATAAAATAGTTATTTTTGATTACATGTAATCAAATAACACTTACTTTTTTTACATGATTTGTTTATATTCTCATGTTCTGAGTTTAATTTTAATCATGCTCTAATAATGTGATTCCTCAGCATCGGTTTGTAGCACCACTTCCtctaaagtttttttcaaatgctttcATAAATGCAGATATGAGAATTTTAGCCTTATTTACCCATGATGTGTTTTGtccagaaaagagaagggaaCTTGATTTATGTCAAGCTTTAGAGAGGAAGAATGTTTGGTCAAAATAAATCTGAAAAACATGATTGTAACGGAGGCCCCTGATGAGTTTTTTGTGATGCCTGCTGGGTGGCGTTCAGGGAAACACTTGGTACAAGAGGAAAGTGTTGGCGGCCATGTTAAACTTCATACGGCGGTTGCAGGAACAGCGTCCAAAGTGAGGGTCTGTCCCAATACCTACACTTGCAGTCTTGAGCGCTTAATAGTTCCCTGTGCAGTTTGACACCGCTAGCTCTATGGAGCAGTTCTTTCCTATCAGTGGATCCCTGTTTTGTTTAGAATGACGATGTGCagacatgcacacgcacacgcagatGAGTAATGTGGTACGCATTCCTGCCAATGGATTCACACTACTCCTCTGATCTACAGGTAGGGCTTACACGCTTACGCGATATGCTGCAATGTGTGACCAAAGGCAGGGAAGAAGACTGCATGCTAGTAAACGTGGATGTTAACAATGTTGGATTTAAAATTCttggctttgcaaatgtttttgcaaaacttaatgcactcgacacttgtttgtttgaccttaaagcaacactaggtaacttttcccgcttcggtccccctacaggttggaagcggaattcaAGGAGTTCAAGGCGGGAAACAACATGGCGGCttgttttatacattttctgTAATTCTGTTTTAACAATCCACCAAAATCCATttcttaaaaacattttatgcgAAAAATAGGCTAGATACAGctgaattttgtttttattttacaactGCCTGCCTTGTTTGACAGCTTGGTCCAAGTTTTGTGAGCCGGTCACATCGCACTGGACGGACTCGTTTATATTAACAATTGATCTTCCTGATTGGACTGATCAGATTGATATTGCATAACTGGCACTGTCAACATACATTTTAAGTATCATATCCTTTTATCGATATATATGATTTGCATAATAAGTTCATTACttacaaatatacatacaaATAATATTGTTTTATGTACAGCAGACGTGACTAGTTCTAGATAACTTGGCTTCAATTGCCTTATTAATTGCATTACTCCTCTCAGCTCCTgaaagtgtgtttttatgtaatACTGGATGGTTGATCCTACTTATTTGTTCCAGCAAAACATCTGAGCCCAACTGTGCCATGTACAGTATTTGCATGAGTAATGGGATGTCCTTTTTAATCAAGCGTGCCCCAGTGGGCTCTGATGTGCTCATGGTCTTAATACTCAAAATCACATCACACAAATGGGAACTTGACTACTTGCCAAAGTGTTAGTATACACACACCTAACTACCCATCCCACTGCACTACACTCGACCTACTTCTAGAAACAGTCAACATTTTAGGAAATCCAGCCGAGAGAGTAGCTTCTTAGGGTGCAAACAAAAatacgataaaaaaaaataaaaaatcaatgaTCATCTCCTTGGTTTTACTAAGTTTGTTAAGTAGCACAATGTTCTCTGGGCACCACTCTGCAAGATGATTTCCTCTCGATGTGAAGTCTCATCGTTGTTTGTAATCATGCCGATGATGGTAGTGTCGTTTTATCGGTGACATTTCCTTTACATGATTGTTCCGGTTcctccggatgtccctcacttttcactttctttgtgctggcattctaaactctgatCGATTCAGGAAATCCTCTGAGCTAGAACCGACAGTCAAactatatttatctttttttaagtaaaattttCATCACACGCTCAaaagccattttaattccagagctcgcctccctgcgtgcacatgttccatcaaaataggttccttccagaggctattttacagAGGGTCCGTTGCTGCGTCCGGCGCTTactgccgcccaagacgattgtgattgggttaaagaaatgccaatcaaccagagcacattttcttCCTAttcaggaatgctgtgtggactagccagaccttcctgtgcagcgctgtggagataggtctggaaATGCGGGACTATGTCGTTGTTAAACAGACTCTCCATGTTGGAGTGGCGTTCGTGGGTGTACAGCGTGAACAGGAGGGGGCTGGGCACACAGCCCTGGGGGGCTCCGGTATTCAACATTAGAGTGGTGTCTGGCCTCCACTCATTATATACACAACCTCCAGGTTTTCAAAGAATATCATGCAATATGACCTGATGCAGTTCTGactattttttgtttaaaaacttAACCTTTAACCATCAACAGTTACACAGCTTTTATTTAAACTTAGTTTGGACAGTGGGATTCAAATATAAATCATCTTATGAATATCAAAAGACAACATTTAATTTAGTAAGTGAAGCAGTCCAGACAACATCTGGTATTAGCCGGACCCACTCTTGGTATAATCAGAAAACAGATATGACTACATATTTTTGTGACATAAAAAGTACAGGGTAGAGATACATGTATTAGCTTTGTGTTACCATTGAGGACACAGAGCTCATGCCCTTAATGTTAGTTATATTTCTTTGGACtcaatatattttttgaaaaatataatatataccaACATATTGGGAGATACATTTCGGAGGATTAGGAGAGGTGGGTTTCATTAGAAGACTTTTGTCTCATAACCTTGGTTATGAGACAAAGGCTTGCTTGTTTGCAGTCTCCACAGAGTCAGATGAAAAAATCAGTTTGATGTGTCTGCATCAAGCACATATGTCTACGGCACACGTACAGTCTATCTTAGCACAAAGTTTAGTGTTAGTGCAATAAATAAACCAACTGCTAGACTCAGGGACATGCACAAAATGTTCAAGGTTTTGCAGTTTTTCAACTGGTTTAACAATGAACAAAGCCCAAGTGACACAACTGGTGCACATTATTTACATGTTGCATCACAACTAGATTCAACATGTAGAAGACATCTATGAAGCTGTTACAAGGATGTATCTTTCCCTTTTAATTCAGCTAGACTGTTTCTAGTGCTTTCGATTGAATGGGCCTTCTCAGTTGATATGAGCTTTAGATATGGTTTAGATAGCCTTCTACTGCCACACTTGTAGGTTCAGAAGGCCACAATCATCTATTAACACGGTAACGGTTTCAAGTAACGATTCAAGTCTTTGTGCTAAACTAGACTAAATACATCATACCTTCACATGCCACTGTGACATAAAACAAGTGTGTTTCCCAAGATGTCACACATCCTCATACCATATTCAATATTTGTGAACTACTGTACACTGAATTATGTTAATATGTAAGCTGCGTTATCTCAGTGCTTCCTGAGATTTATTGGTGAGTTATTGAGAGCCAAATATGTCAAAAGGCTGTTGGTCATTGACAGTAGTTGTTGGAGCCTTGGGAAAGCACACACAGAGGCTGCCAGAGCAGTAGACTGCATGTGAACATCTTCTCTTTTTGCCCATGAATTGTGTAGTGACTGCACAAATGTCAGCAAGTAAGATGTTCCATAAAATGCTGGCGACCATTATACATGATCTTGTTACAGTATATCACAGAAATTATATGTCTGGTTGAAACTGGCTAGAATGTAGAAAATACAAACTGAGTTTCCACATTTAGGAGTTTCTTCACATGGCATCACTACAAATATGGCAAACGAATAAGTGTTTTACCAGTTCCAACCAAGCAGCAACCACCATGGCTGAGTGGCTCCAATGTGTCGGTAGCCATGTCGAAGATGTTTATGTAAGTTGTTTTCTTGATTGGCTTGTGTCTCAGCCCTGGTGCGTGCTCATCCTACTTCAGCCTGACCAAATTTGCAATGTGAACTGAAAGCACTATGCAGAAGTAGAGAATAACAATGTATCAATGTACAGTGTCATGTATCTTAAAGATAAAAATTGTGGTTCACTAGAATTATATGTAAATACTGTAGTGATACAaactgttcatattttttctgcatATCCCATGTACAGAATGCTAGAAGAGAGGAAATGATTTTAAATACTTGATTAATCAAACAATCAATAATTCAGTAATCACTGATTGTCTTGAAGTTATAGCGTCAACAGTGTATTGGTGTGAAAGGCATATGTATGGTAGATAGTGTCAGGTGTGTGCAATATTATAATGACTTCACTCTTCTTCTCTCTTACAACAGTCACCGATGTACTGTTAGCTCAACAATGTCTCCATTAAATGGACAGATGTAacactg

Function

symbol description
c1ql3 Predicted to enable identical protein binding activity. Predicted to act upstream of or within regulation of synapse organization. Predicted to be located in extracellular region. Predicted to be part of collagen trimer.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG:

id description
K23284 C1QL; C1q-related factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039789753.1 True 6220 mRNA 0.43 2 4433632 4455529

Neighbor

gene id symbol gene type direction distance location
trnas-gcu_30 NA coding downstream 7252 4426299 ~ 4426380 (-)
trnas-gcu_29 NA coding downstream 8932 4424619 ~ 4424700 (-)
trnas-gcu_28 NA coding downstream 11478 4422073 ~ 4422154 (-)
trnas-gcu_23 NA coding downstream 27409 4406142 ~ 4406223 (-)
trnas-gcu_22 NA coding downstream 29080 4404471 ~ 4404552 (-)
rsu1 rsu1,LOC102787280 coding upstream 11322 4466851 ~ 4510609 (-)
LOC120552074 NA coding upstream 69772 4525301 ~ 4532240 (-)
LOC120552070 plppr4,LOC102778844 coding upstream 114888 4570417 ~ 4613727 (-)
trnas-gcu_31 NA coding upstream 341952 4797481 ~ 4797562 (-)
trnas-gcu_32 NA coding upstream 343461 4798990 ~ 4799071 (-)
G217905 NA non-coding downstream 170700 4262626 ~ 4262932 (-)
G217884 NA non-coding downstream 254714 4178696 ~ 4178918 (-)
G217828 NA non-coding downstream 529080 3904107 ~ 3904552 (-)
G217818 NA non-coding downstream 559998 3871733 ~ 3873634 (-)
G217817 NA non-coding downstream 589150 3844143 ~ 3844482 (-)
G217935 NA non-coding upstream 10454 4465983 ~ 4466440 (-)
G217960 NA non-coding upstream 110101 4565630 ~ 4566156 (-)
G217971 NA non-coding upstream 163087 4618616 ~ 4618865 (-)
G217976 NA non-coding upstream 304736 4760265 ~ 4762269 (-)
G217977 NA non-coding upstream 330864 4786393 ~ 4786618 (-)
G217837 NA other downstream 492303 3936010 ~ 3941329 (-)
G217780 chchd7,LOC102799933 other downstream 729275 3692952 ~ 3704357 (-)
f3a NA other downstream 977588 3437802 ~ 3456044 (-)
LOC120552696 NA other downstream 1089927 3315418 ~ 3343705 (-)
svila svil other downstream 1297418 2988926 ~ 3136214 (-)
G218019 NA other upstream 571976 5027505 ~ 5036704 (-)
G218085 LOC107687935 other upstream 1244700 5700229 ~ 5700576 (-)
G218453 adarb2 other upstream 3739400 8194929 ~ 8195879 (-)
G218471 NA other upstream 3974935 8430464 ~ 8430930 (-)
prkdc prkdc other upstream 4342252 8797781 ~ 8851726 (-)

Expression


Co-expression Network