chpf2 (chpf2)


Basic Information

Item Value
gene id chpf2
gene name chpf2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 19639856 ~ 19648801 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039789763.1
ATCGGTAAAATAATGTAAGCATTGGCTTGGACTACTTAGACACGCTCGTAGACAATACAATTAAATACAATTAAAGGCTGGTGATGGATAGTAGATTGGAGCTTTCACACCGCCGCGCAGTAGCTCGCCGCCTCCAGTTATCTGATTTCAATGAGGGAAAGGCCAAAGGCGGCAAGGGGAAAGCGGTGGTACGAAGCGGTTTCCGCCGCAGCCCACGTGAACGCGCTCAGATTATGCTCTGAATCATTATACTGGCCTGCTTTACCCCTCATCCTCGGGCTGTCTCTGGGATGTAGTCTGAGCCTTTTGATGGTGTCCTGGACACAAGGGGATACCGATGACTCCTGTGGGGATGAACTGGGCAATGGGAGGCTTTTCATGGGTAGAGCAGATGCCCAGAGAGACTCAAGGGATGAAGCTGCAGATGAAGACGTCCAGCCACGTATCGTGCCCTACCACAAGGACCCAAACAAGCCTCACAAGAAAGTCCTCAGAACTCGTTACATTCACACTGAACTGGGCATCCGAGAACGTCTGCTGGTGGGTGTACTGACCTCCCGGGCCACCCTCAACACGCTGGCCGTGGCGGTGAACCGCACTGTTGCCCATCGCTTCCATCGCACCTTTTTCTTCACAGGCCTGCGCAGCCCTAAGGTGCCTCACGGCATGACCGTGGTTGCTCACGGCGACGACCGCCCAGTGTGGCTGATGTACGAGACGGTTCGTCACCTCCATCAGCACTACGGCTCTGACTATGACTGGTTCCTCTTAGCCCAGGATGACACTTACATGCAAGCAGATCGTCTGTCAGAGCTGGTGGGCCACCTCAGTGCAGGTCAGGACCTCTACATGGGCAGGGCGGAGGAGTTTATTGGTGGAGAAGAGAAGGCACGCTACTGCCACGGGGGCTATGGCTACCTGCTGTCACGCAGTCTGCTGGCCCGTCTGCAGCCCCACCTTGACACCTGCCGTAATGACATCCTCAGTGTGAGGCCTGATGAGTGGCTGGGCCGCTGCATTATTGACTACCTGGGTCTCAGTTGTGTGGAGGTGCACCAGGAGATGACCTATCGTTACTTTGAGCTCGGAAAAAACGCAGATCCAGAGCGCGAAGATAGCATACCGTTTAAAAATGCCTTCACAGTCCATCCTATATCAGAACCAAATCTCATGTACCGCCTACACAAACGCTTCAGCCAGATAGAGCTGGAATGGACTTACCTACAGATACAACAGCTGCAGGTGCAGATCAACAACCTGAGTGACCTGACGCCAGAGGGGAAGGCTGGAGTCACGTGGCCCATCGGAATCAACCCTCCCTTCAAACCAAGATCCCGTTTTGAGGTTATAAACTGGGAGTACTTCACTGAAGAGCATATTTACTCATGCATTGACAGCTCGCCCAAGTGTGAGATGAGAGGGGCTGACCGTGCGGATGTAAACGCAGTTCTGGAGATTGCAGTGGGGCGTCTGAATGAACGCTACCAGCCCCAGCTACGCTTCCGCAAGAGGCGTCTGCTTAATGGTTACAGGCGCTTTGATCCCACGCGTGGTATGGAGTATATGCTGGACCTTGCGCTGGAGGTGTACACCCAGAAAGGCCACAGTCAAGTCATTGCCAAACGGGTTAACTTACTGCGACCTCTCAGCGCGGTTGAGATTATCCCCATGCCCTATGTGACAGAGGCAACTCGGGTGCAGGTCATCCTACCTGTCACTGCCCAGGACCAGGACTATGTTGGTAACTTCCTCGACATGTATGTGATGAACACGTTGGACACCCATGACAATGTTTTACTCACGTTCCTGTTCATCTATGATCCCTTTGATGCACAGCGAGTCAGCCAGACCGATGTGTTTGCTGGCATTAAGGCCATGATCGGGGAGGTGGAGAAGCGCTACGGAGACGTGAAGATCCCCTGGATCAGCGTGAAGACGGAGGTGCCCTCGCAGGTCAAGCTGATGGACATCATCTCTAAGAAGCACCCAGTGGACACGCTGTTTTTCCTGGCCGGCGTGTGGACCGAGGTCAATGCTGACTTCCTGAACCGCTGCAGAATGAACGCCATCAGCAACTGGCAGGTGTTCTTCCCCATCCACTTCCAAGAGTACAGTCCTGCTGTCATGTACCGCGACCAGCAGCCCTCCGCTGCCTCCTCCTCTTTTGCTTCGGAGTCGCTGCGAGGGCCCGCCCACTTTGACCGCCATGTCTTCGACGAGGCTTGCTTTTACAATGCGGACTACATGACCGCGCGGACCAAGATGGCTGCTGACATCTTGGACAACGAGGAGCTGCTGGAAAGCATGGACGTGTACGACATATTTGTCCGTTACTCAGGTCTACATGTGTTCAGAGCTGTAGAGCCGGCGCTGATCCAGAAATACGTGCGGCGAGCGTGCAACCCCCGATTCAGCGAGGATATCTACCACCGCTGTGTCCTCAGCAACCTGGAGGGCCTGGGGTCACGCTCACATCTAGCTATGGCTCTTTTTGAGCAAGAGCAGGCCAACAGCACCTAGAGGCCTTCTCGTGCCTCAAATACTGCCTGGACTAATGAATACTCACACAGAATAAAGAGAACTATAATATAGTACTTTTGTGATCCATACACTGAAATTCTTGCCCTTGTATTGGGCAGAAAGAGGTCAGGATCAACTTAAGAACCGCATCAGCTTGCTCATGGACACTATGACAGAGTAAATGTGTGCTGAAGCATACATTCTTCCAGCTGAAAATCTCTTTGCTCAGTAGTTCTGAGTACTAATGACTTAGGAGTCTGTAACTGTGACTCTGTCATGTCTAGACCAATTTTGAGTCATGGAGGTGTCAGATTGCGGCCTACTGTTTGTATTGCTGCCATTGACTTATTCTTTCAGGAGCCAAACAACCATATTTATACTccaattttaaaattaaaataaaagaaggTTGTGtcttgaaataaatgaaaaaacaaaaaacttgagCCATAAGTCTTCCTTAGTGAAGATGTTTAAAGTGATACTGGAAACAAGCTGAAGCCGTTGgctgcctttttcttttcttttttttaagaggtATTAAAGAGTGATATTTCTGTTCA

Function

symbol description
chpf2 Predicted to enable glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity. Predicted to be involved in chondroitin sulfate biosynthetic process. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cranial cartilage; nervous system; notochord; optic cup; and tail bud. Orthologous to human CHPF2 (chondroitin polymerizing factor 2).

NR:

description
chondroitin sulfate glucuronyltransferase-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K03419 CHPF2; chondroitin polymerizing factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039789763.1 True 3083 mRNA 0.51 6 19639856 19648801

Neighbor

gene id symbol gene type direction distance location
asap1b asap1 coding downstream 54408 19518530 ~ 19585448 (-)
fam49bb fam49b,LOC104954579,LOC105915818,LOC103377397,LOC107085391 coding downstream 125819 19475880 ~ 19514037 (-)
ankha ankh coding downstream 309302 19315583 ~ 19330554 (-)
vps41 vps41 coding downstream 426204 19196583 ~ 19213652 (-)
LOC120552661 esco1,LOC102306999,LOC105019393,LOC107732058,LOC107599690 coding downstream 444333 19182050 ~ 19195523 (-)
si:ch73-173p19.1 LOC103363515,LOC104954586 coding upstream 10088 19658889 ~ 19666720 (-)
kif9 NA coding upstream 240881 19889682 ~ 19908076 (-)
cdv3 cdv3 coding upstream 301180 19949981 ~ 19954961 (-)
tmem108 LOC107589950 coding upstream 309483 19958284 ~ 19999250 (-)
topbp1 topbp1 coding upstream 353655 20002456 ~ 20018989 (-)
G221138 NA non-coding downstream 38917 19600706 ~ 19600939 (-)
G221095 LOC102309907,LOC101472733,LOC102788342,LOC101061645,LOC104929597 non-coding downstream 95464 19517372 ~ 19544392 (-)
G221090 NA non-coding downstream 193562 19446045 ~ 19446294 (-)
G221088 NA non-coding downstream 200317 19436966 ~ 19439539 (-)
G221086 NA non-coding downstream 265340 19372591 ~ 19374516 (-)
G221143 abcf2 non-coding upstream 3553 19652354 ~ 19656460 (-)
G221146 NA non-coding upstream 20903 19669704 ~ 19669954 (-)
G221149 NA non-coding upstream 30267 19679068 ~ 19730782 (-)
G221160 NA non-coding upstream 69647 19718448 ~ 19719622 (-)
LOC120551913 NA non-coding upstream 75298 19724099 ~ 19754508 (-)
G221048 ankh other downstream 312962 19315591 ~ 19326894 (-)
mettl4 mettl4 other downstream 690361 18938913 ~ 18949495 (-)
LOC120552352 colec12,LOC102798044 other downstream 828912 18772977 ~ 18810944 (-)
G220833 NA other downstream 941886 18610236 ~ 18697970 (-)
si:ch73-174h16.4 LOC103364270,LOC104947970 other downstream 1156080 18426762 ~ 18483776 (-)
LOC120552536 fbxl7 other upstream 1186377 20835178 ~ 20862688 (-)
rbis LOC101064519,LOC103367294,LOC102312013 other upstream 1568879 21217680 ~ 21221667 (-)
tfr1b NA other upstream 2341216 21990017 ~ 22011086 (-)
LOC120552473 NA other upstream 2465581 22114382 ~ 22120611 (-)
smpx smpx other upstream 2553966 22202767 ~ 22218381 (-)

Expression


Co-expression Network