ngdn (ngdn,LOC103482313)


Basic Information

Item Value
gene id ngdn
gene name ngdn,LOC103482313
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 10464346 ~ 10473620 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039789773.1
CTACAGTGCAACACCACCAAGCTCTGTATGACCACTGTTCCTCTGCGGCTTCCGTAGATTACATTAACAACAAAATGGCTGACCCTGTTGACAACGCTTTAATTGAAAGTGATTTGCCTGCAGCTGTACAGCTGCTGAGGAATCTCACAGAACAGGTGGCCTCAGTTACAAGTCATGTCCGTGACCTGATAACAAAAGTCAAAGATGGGGCATTTAAGACATCAAAGGGTTTGTCATTCTTGGACCTTCGGTATCACCTGCTGCTCTTTTACCTTCAAGATCTCACTCACCTGATCAGCATCAAAACAGGAGGAGGCAAAATAAAAGACAGCGAAGCCTTGAATAGACTGGTCACAGTCAGAACGGTCCTGGAGAAGATGCGACCGATAGACCACAAACTGAAGTACCAGATTGATAAACTGGTGCGCACAGCTGTCACCGGCAGTTTAGCTGAGAACGACCCGCTGCAGCTGCGTCCTAATCCTGAAAATCTCATCAGCAAATTGAGTGAATCTGAGGAGTCTGAGGGTGAAGCTGAGAATAAGACGGAGAAGAAAGCAGCCCACTCTAGTGGCAGGAAATATGTACCGCCAAAGATTGCCCCAGTTCATTATGACGGTGACATGACAGAAGCGGACAAGAAGAAGGCTCAGTCGGAGCGCCAGCGGCGAGCTGCCCTCAGAAGCTCTGTGATCCAGGAGCTGAGACAGCAGTACAGCGACGCTCCGGAGGAGATCCGGGACAGACGGGACTTCCAGAGCGATCGGGAGAGCCGCGAGGAGCTGCACAGGAAAAATTACGAAGAGTCCATGATGGTGCGTCTCAACATGCCGCAACGGCAGAAGAATGCCAGAAAGAGAGGCGCGATGTCCATGACCGGCCAGCTGAGCGGCATCACACACTTCAGTGACATCACAGCACTGACAGGCGGCGAGGGGGGCCAGGATGGGGATAGTTCTCGCcccaagaaaaagaagaaactcATGAAGAAGAAAACGAAAAGAAGAGCCTTTAAGAAGCACAGATAAGAAGACCTGAAACACGTGTCCAATGATGTTAGAAGACCAAATGACATGAAGAGGATTTCTTACCCACAGCCGTCATTTTAGTTTATACTTCAGAGTTTAGCCAATTTTGTTACCAATAAGTCAGTTGTGCTGCAGTACAAAATTCCCCACCACCTCTGCATAGTGTATCAGTTTGTGGAATAAACATTTACTGCTGACTTCTGTA
>XM_039789774.1
CTGTGGGTAGACACTTATGGCTTTAATTGAAAGTGATTTGCCTGCAGCTGTACAGCTGCTGAGGAATCTCACAGAACAGGTGGCCTCAGTTACAAGTCATGTCCGTGACCTGATAACAAAAGTCAAAGATGGGGCATTTAAGACATCAAAGGGTTTGTCATTCTTGGACCTTCGGTATCACCTGCTGCTCTTTTACCTTCAAGATCTCACTCACCTGATCAGCATCAAAACAGGAGGAGGCAAAATAAAAGACAGCGAAGCCTTGAATAGACTGGTCACAGTCAGAACGGTCCTGGAGAAGATGCGACCGATAGACCACAAACTGAAGTACCAGATTGATAAACTGGTGCGCACAGCTGTCACCGGCAGTTTAGCTGAGAACGACCCGCTGCAGCTGCGTCCTAATCCTGAAAATCTCATCAGCAAATTGAGTGAATCTGAGGAGTCTGAGGGTGAAGCTGAGAATAAGACGGAGAAGAAAGCAGCCCACTCTAGTGGCAGGAAATATGTACCGCCAAAGATTGCCCCAGTTCATTATGACGGTGACATGACAGAAGCGGACAAGAAGAAGGCTCAGTCGGAGCGCCAGCGGCGAGCTGCCCTCAGAAGCTCTGTGATCCAGGAGCTGAGACAGCAGTACAGCGACGCTCCGGAGGAGATCCGGGACAGACGGGACTTCCAGAGCGATCGGGAGAGCCGCGAGGAGCTGCACAGGAAAAATTACGAAGAGTCCATGATGGTGCGTCTCAACATGCCGCAACGGCAGAAGAATGCCAGAAAGAGAGGCGCGATGTCCATGACCGGCCAGCTGAGCGGCATCACACACTTCAGTGACATCACAGCACTGACAGGCGGCGAGGGGGGCCAGGATGGGGATAGTTCTCGCcccaagaaaaagaagaaactcATGAAGAAGAAAACGAAAAGAAGAGCCTTTAAGAAGCACAGATAAGAAGACCTGAAACACGTGTCCAATGATGTTAGAAGACCAAATGACATGAAGAGGATTTCTTACCCACAGCCGTCATTTTAGTTTATACTTCAGAGTTTAGCCAATTTTGTTACCAATAAGTCAGTTGTGCTGCAGTACAAAATTCCCCACCACCTCTGCATAGTGTATCAGTTTGTGGAATAAACATTTACTGCTGACTTCTGTA

Function

symbol description
ngdn Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within regulation of translation. Predicted to be located in cytoplasm and nucleus. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Orthologous to human NGDN (neuroguidin).

NR:

description
neuroguidin

GO: NA

KEGG:

id description
K14765 NGDN, LCP5; U3 small nucleolar ribonucleoprotein protein LCP5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039789773.1 True 1233 mRNA 0.49 11 10468538 10473620
XM_039789774.1 False 1157 mRNA 0.49 11 10464346 10473620

Neighbor

gene id symbol gene type direction distance location
zmp:0000000991 NA coding upstream 48984 10401164 ~ 10415362 (+)
trnac-gca_34 NA coding upstream 231789 10232486 ~ 10232557 (+)
nsmaf nsmaf coding upstream 631283 9814806 ~ 9833063 (+)
rbbp8 NA coding upstream 658909 9797181 ~ 9805437 (+)
fam168b fam168b,LOC103356147 coding upstream 667924 9790312 ~ 9796422 (+)
thtpa thtpa coding downstream 34513 10508133 ~ 10512302 (+)
LOC120552103 NA coding downstream 53902 10527522 ~ 10530677 (+)
pck2 pck2,LOC104953087 coding downstream 68717 10542337 ~ 10555308 (+)
tm9sf1 tm9sf1 coding downstream 212408 10686028 ~ 10695609 (+)
pdcd6 pdcd6 coding downstream 271058 10744678 ~ 10769201 (+)
G218855 LOC107095245,LOC103482310,LOC104941941,LOC106909044,LOC103135331,LOC103135328,LOC106963427 non-coding upstream 34283 10429009 ~ 10430063 (+)
G218849 LOC103396567,LOC106514906,LOC101486325 non-coding upstream 39669 10424291 ~ 10424677 (+)
G218831 NA non-coding upstream 134821 10329255 ~ 10329525 (+)
G218796 NA non-coding upstream 499542 9964434 ~ 9964804 (+)
G218728 NA non-coding upstream 616150 9844954 ~ 9848196 (+)
G218884 NA non-coding downstream 62225 10535845 ~ 10536541 (+)
G218892 NA non-coding downstream 84260 10557880 ~ 10563111 (+)
G218896 NA non-coding downstream 103779 10577399 ~ 10583350 (+)
G218899 NA non-coding downstream 117999 10591619 ~ 10599801 (+)
G218908 NA non-coding downstream 159367 10632987 ~ 10664783 (+)
G218848 LOC103365363 other upstream 41097 10422586 ~ 10423249 (+)
G218695 NA other upstream 1005646 9458183 ~ 9458700 (+)
G218694 LOC106675555,LOC106675866,LOC106674541,LOC106099046 other upstream 1086199 9376944 ~ 9378147 (+)
rnpc3 NA other upstream 1234183 9211918 ~ 9230163 (+)
G218441 LOC101478037,LOC102216221,LOC100695799 other upstream 1857768 8550783 ~ 8606578 (+)
G218875 pabpn1 other downstream 14647 10488267 ~ 10494988 (+)
dcaf11 dcaf11 other downstream 42830 10516450 ~ 10526204 (+)
ipo4 ipo4,LOC102785023 other downstream 229518 10703138 ~ 10719314 (+)
zgc:101569 LOC102309791,LOC106455900,LOC102784166,LOC100695384,LOC101475816,LOC106931939 other downstream 295755 10769375 ~ 10815975 (+)
tmem14ca LOC104958612,LOC101162485 other downstream 866707 11340327 ~ 11342705 (+)

Expression


Co-expression Network