mix23 (ccdc58)


Basic Information

Item Value
gene id mix23
gene name ccdc58
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 16328173 ~ 16333827 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039789826.1
ATGGACCAAAGTGTTTTATTCAGGCACTGTCTTGAACAACCACTAGCGTTGTGTCTAGAGAGGACCTTGCAGTCCACCATGGCGGCGCCCGGTGGAACTTTAAACTGTGAGGACTTTTCAATGTTTCAGGAGGTGCTAAAGTTGATGCGCACCATAGATGACCGCATCGTCCATTCTCTGAACACCACCGTGCCCACAGTCTCCTTCTCAGGCAAAGTGGATgccacacaaacatgcaaacaacTATATGAATCTATGATGGAGGCCCATCTGACCCGAGACAAAGCTATCAAGTCCTGTATAGCCCAAACATCTGAGGTGGTGGGGCAACTGCGTgaagagagagcaaaagacagCGAAAACCTGACGCTCCTCAAACAGCTCAGAAAAGAGCAAACCAAATTAAAGCTTATGCAATCAGAGCTGAATGTTGAAGAGGTCGTCAATGATAGAAGTCTGAAGGTTTTCAGTGAAAGGTGCAGAATCCACTACATACCCCCGAAGGTGAAGTGAAGACAAAGGTCCGATGAGAGGAGCTGCTTCACTCGAGAGGTTTGAATCCAGACCGGAGCTGAAACTGTGACCTGCTGCTGAGTCTTGACTGCAGGCTGCAGACCATCCAGACCACTCTGACCTCTTCTCCAACACACTTGTATTCCATTGTGATTATTGTATTGCATTACCACAGCTGTAAAACAGTCATCcgtgagcttctttaatgagaAACATTGtaccaaaaaaagtattttctttttttttttttaaggaaatgaAATGTTCTCAAGTGTGTTGTCTGTGATTTAAATCATTTGAGTCTTTTGATGAA
>XM_039789827.1
CTTTTCGGCTTATGTGTGTCTCATGCGTCTCTGCAGCCGCCATTTTGGGACGGAGTAGGGCTTACGGCTGACCATAAAAACTCAGAAAAAGACAGACTTTCGTGCGACATATGGAGGTGCTAAAGTTGATGCGCACCATAGATGACCGCATCGTCCATTCTCTGAACACCACCGTGCCCACAGTCTCCTTCTCAGGCAAAGTGGATgccacacaaacatgcaaacaacTATATGAATCTATGATGGAGGCCCATCTGACCCGAGACAAAGCTATCAAGTCCTGTATAGCCCAAACATCTGAGGTGGTGGGGCAACTGCGTgaagagagagcaaaagacagCGAAAACCTGACGCTCCTCAAACAGCTCAGAAAAGAGCAAACCAAATTAAAGCTTATGCAATCAGAGCTGAATGTTGAAGAGGTCGTCAATGATAGAAGTCTGAAGGTTTTCAGTGAAAGGTGCAGAATCCACTACATACCCCCGAAGGTGAAGTGAAGACAAAGGTCCGATGAGAGGAGCTGCTTCACTCGAGAGGTTTGAATCCAGACCGGAGCTGAAACTGTGACCTGCTGCTGAGTCTTGACTGCAGGCTGCAGACCATCCAGACCACTCTGACCTCTTCTCCAACACACTTGTATTCCATTGTGATTATTGTATTGCATTACCACAGCTGTAAAACAGTCATCcgtgagcttctttaatgagaAACATTGtaccaaaaaaagtattttctttttttttttttaaggaaatgaAATGTTCTCAAGTGTGTTGTCTGTGATTTAAATCATTTGAGTCTTTTGATGAA
>XM_039789828.1
AGAAATGAAGGTGGGATATGGACCAAAGTGTTTTATTCAGGCACTGTCTTGAACAACCACTAGCGTTGTGTCTAGAGAGGACCTTGCAGTCCACCATGGCGGCGCCCGGTGGAACTTTAAACTGAGGTGCTAAAGTTGATGCGCACCATAGATGACCGCATCGTCCATTCTCTGAACACCACCGTGCCCACAGTCTCCTTCTCAGGCAAAGTGGATgccacacaaacatgcaaacaacTATATGAATCTATGATGGAGGCCCATCTGACCCGAGACAAAGCTATCAAGTCCTGTATAGCCCAAACATCTGAGGTGGTGGGGCAACTGCGTgaagagagagcaaaagacagCGAAAACCTGACGCTCCTCAAACAGCTCAGAAAAGAGCAAACCAAATTAAAGCTTATGCAATCAGAGCTGAATGTTGAAGAGGTCGTCAATGATAGAAGTCTGAAGGTTTTCAGTGAAAGGTGCAGAATCCACTACATACCCCCGAAGGTGAAGTGAAGACAAAGGTCCGATGAGAGGAGCTGCTTCACTCGAGAGGTTTGAATCCAGACCGGAGCTGAAACTGTGACCTGCTGCTGAGTCTTGACTGCAGGCTGCAGACCATCCAGACCACTCTGACCTCTTCTCCAACACACTTGTATTCCATTGTGATTATTGTATTGCATTACCACAGCTGTAAAACAGTCATCcgtgagcttctttaatgagaAACATTGtaccaaaaaaagtattttctttttttttttttaaggaaatgaAATGTTCTCAAGTGTGTTGTCTGTGATTTAAATCATTTGAGTCTTTTGATGAA

Function

symbol description
ccdc58 Located in mitochondrion. Orthologous to human MIX23 (mitochondrial matrix import factor 23).

NR:

description
PREDICTED: coiled-coil domain-containing protein 58

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039789826.1 True 826 mRNA 0.45 5 16328173 16333084
XM_039789827.1 False 810 mRNA 0.45 5 16328173 16333827
XM_039789828.1 False 820 mRNA 0.45 5 16328173 16333101

Neighbor

gene id symbol gene type direction distance location
si:ch211-161h7.8 LOC104965030,LOC103368931 coding downstream 39845 16286497 ~ 16288328 (-)
ccdc191 ccdc191 coding downstream 99423 16217158 ~ 16228750 (-)
naa50 naa50,LOC106579447 coding downstream 143768 16180440 ~ 16184405 (-)
LOC120551982 usf3 coding downstream 147971 16169979 ~ 16180202 (-)
LOC120551886 shisa2 coding downstream 216688 16104128 ~ 16111485 (-)
kpna1 kpna1 coding upstream 5285 16339112 ~ 16346072 (-)
sec22c sec22c coding upstream 124506 16458333 ~ 16464016 (-)
klhl40b klhl40 coding upstream 180365 16514192 ~ 16517938 (-)
hhatlb hhatl coding upstream 185215 16519042 ~ 16527050 (-)
LOC120551893 LOC103377216,LOC107591252,LOC101472906,LOC100709944 coding upstream 193837 16527664 ~ 16534798 (-)
G220211 NA non-coding downstream 63388 16264577 ~ 16264785 (-)
G220203 NA non-coding downstream 118632 16208258 ~ 16209541 (-)
G220171 NA non-coding downstream 209585 16117953 ~ 16118588 (-)
G220048 NA non-coding downstream 393904 15881506 ~ 15934269 (-)
G220042 LOC100701814,LOC101478750,LOC102788341,LOC102295400,LOC103362138 non-coding downstream 456879 15870720 ~ 15871294 (-)
G220243 NA non-coding upstream 3991 16337818 ~ 16339037 (-)
G220254 NA non-coding upstream 31377 16365204 ~ 16366613 (-)
G220257 NA non-coding upstream 114103 16447930 ~ 16450221 (-)
G220272 nktr,LOC102798446 non-coding upstream 138421 16472248 ~ 16477515 (-)
G220273 NA non-coding upstream 145556 16479383 ~ 16481158 (-)
drd3 drd3 other downstream 43438 16266303 ~ 16284735 (-)
G220124 NA other downstream 262952 16064670 ~ 16065221 (-)
G220117 usp12,LOC107701680,LOC107705210 other downstream 323409 16003879 ~ 16004764 (-)
si:ch211-140b10.6 polr1d other downstream 354510 15968731 ~ 15973663 (-)
mtfr1 NA other downstream 647285 15676254 ~ 15680888 (-)
LOC120552205 LOC100711537,LOC102295084,LOC108230444,LOC106948898,LOC103140410 other upstream 448245 16782072 ~ 16795124 (-)
G220412 csrnp1,LOC104937158,LOC102793366 other upstream 540822 16874649 ~ 16875300 (-)
si:ch73-174h16.4 LOC103364270,LOC104947970 other upstream 2092935 18426762 ~ 18483776 (-)
G220833 NA other upstream 2276409 18610236 ~ 18697970 (-)
LOC120552352 colec12,LOC102798044 other upstream 2439150 18772977 ~ 18810944 (-)

Expression


Co-expression Network