cdv3 (cdv3)


Basic Information

Item Value
gene id cdv3
gene name cdv3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 19949981 ~ 19954961 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039789853.1
TTTTTCCGGGTTACGGTACAGATTTGTCAAATAGCCCCATAGCCCGTGCATGGCATGGTCGATTCAGTCAGGAATCAAGGGTGGACATTTTTATCAGTCTGTAACAGAAGTTAAACCGTCAGAGTAACGAGTAACTCCATCTTTTCTGACCGTTTGAACAGCTGTCTTCACTCTCGAAGAGCAGATTTTCACATTTGTCATAGCTCGGTTAGCGTACTAGTTAACGTTGCTCTTTGAAAATGGCGGATCTACCACCAGAGAAAAGCCTGGACGATTTCTTTGCCAAGCGggataaaaagaagaagaaagaaaaaggtaaGGGCAAGGAGTCCACCACCGGGCCCACGTCGGCTGTGATAAAAAAGAccaagagggagaaggagaaatCGGCGAAAAACGACAATCAAGACGCACAGATTGAAaagGAGGACGAGGAATGGAAAGAGTTTGAGCAGAAAGAAGTGGACTACAGCGGGCTCCGGCTCCAAGCTTTACAGATAAGTGacgagaaagaggaggaggactaCGAGAAGGAGGAGGTTGGTGAGGATGGAGAGATCATTCTGGTCAGCGGAGACAAAGTGTCTGGTCCCTGGAACAAGTCTGGTGCTGCTCCAGCTCCTGCTGCTGCACCTGTGGAGGATGTAGAAGAGCCTGAGTCAAAGCCTTCTGGTGTATATCGCCCTCCAGGGGCTCGCATGTCCACCACCAGACGAGCTCCCACCCAGGGGCCTCCTGAGATCTTCAATGATGCACAGTTCCCCTCTCTACTGGCCACCGCCAAGCATGTGGAGACACGCAAGGACCGAGAAATGGAGAAGACCTTTGAAGTTGTGAAACACAGGAACCGTGGTAGAGAGGAGAGCGGCGGCGCCTCTATGCAGCAGTTGCAGCTTGACAACCAGTATGCCATCCTGGGGGATAAGTAGAGCAGCTCCCCACCGCCCCCTGGCCCCTTCAGCACGGTCCTGCCAAGCCCCTCGAAGGAAGCGTAACTCCAGCTGTGTTGACTGCAGTCCTGAAAAAGCTCATCTTGCCACCATCTTAACACTggttactaacacacacaaacacacacacacacacacacacacacacacacatagcctcatatacatacatacatacatacatacatacacacacataaacagcaATACCACTGCACCACATACAGTGACACTCCCTTTAAATAAATAGTAACACACTTTACATATATTGGTTGGCAAAACTGAAGGACTGCACCTTAAGGGGCTGTTGAAAGAGGGAAGAATTGAAAAGGAATTACACGCAAAATACACCCAAACGTACAacactgcagcagcaacaaTGGACGACGACATATTTGTCCTTTTGTGGATTGTACTCAGAGCAGCAGTTGTGTGGCGCAACGTTTCTCTGGACTTCATCTTGCTTTGATAAAGCCACAGAGGATAACTTTAGGCAAGATGATTTTACAAACTTCTGTGAAAATATCTATTTTTTTGCAAGATCGTTATAACCCAATCGCACATGGTAATTTGGGGTGTGTTTTTGAGTTGCGGTGGGGGGGCTTCAGGAGTGGGGATACTACCTCTGCAGCCTAGCTGGTGGTGACCATGTGgactgagctttttttttttttctcgctgTGGTGGTGAACGGGGCAAACAccagcccccctcccccccacataGAACCCGGCCATCAGGCTCTTTAGTTTAGAAACTTGaagctttgctttttttttctccttcatgACGATGACACTCTGCAAAGATCTATGGACAAGAAGTGATGGGTTGTGGTCCTCATTTAGAATTTCTATATTAAGTGGCCTTACTGATAGAGAAACTGCTTTGTCATCTGAAGAGAACTTGGCTTGTTGTCTCACGGGCTGCTGCCTGCCTCTGGTTCTCACCACTTTTTGACAAacaccccctccctctcccataTACAAACGAAGAAAATCCTTCTGTTCAAGAATGTAGTGTTGTAGTTTGCCTGATGATTACAACTACTAACTGTCTTTCATATCCACTGTTGGATTTTGCTGCCCCTACTTCATATTGGTCTTTTTAGACATCAGCAAAAGAGAaattaaagcttgtttctaatCTAAAACCATTCTTTTAgtaacaaatgctttactgtgGTTTGACACCAGATGGTCACAGATGTTACAGTATCAAGAAAAATGACAGGAAACCAAACTACTTTAAAAGCGTATTTGTTGAGGTAATTTGGTTCACAACTTTTATAATTTGTTGTAAAGTGGTGTAGTTttaagacttttcttttttttttaaatcaaggctttTCCTCATGAGTAAACGTGCTGTGTCAGCCCTTGTTGCAGTTGTGTAGAACCGGTAGCTTGTGCATAACTTAATTTCCAGAGAGTTACAGTGACTCCACGTCTGTGAAAACAAATGTCACCAAACCAACGGAGTACTGTCCACTTAACAAAACAGTGGTATGCCCAGTTGAAATCAAATGAGGTTTTACTACAAACATAGTTATGTTTTAGAAAGGTGAAGAACTGGATTTATGTTCTGTTTCAGTCCTTTCCATATAAGATGTCGGGGAGCGTTGATCTCTGCTGGAACACTTTGGGTGGACGTAGATAATATTTGTGATGAAAAGAGAAGAgcctaacacaaaaaataaagtgatcCTTGTGACTGAAGTCTTGTCTGAATCTttaaacattgaaaatggggatttactgtatacagtgtctttttttccataaaagGTGTTGTCTAATTGTAAACTTGACACTTGTGTTAACCTGCTATGCCTCCCATAATCACTTATTTAGTGTCTCGATTTGACCAATCATGGGAAATTTATCAAAAGTTCCAGCGCTTTTTGAAAAATGACCTTATACCAAGGATattaacaaataaaagaaattttCTCACA
>XM_039789854.1
TTTTCCGGGTTACGGTACAGATTTGTCAAATAGCCCCATAGCCCGTGCATGGCATGGTCGATTCAGTCAGGAATCAAGGGTGGACATTTTTATCAGTCTGTAACAGAAGTTAAACCGTCAGAGTAACGAGTAACTCCATCTTTTCTGACCGTTTGAACAGCTGTCTTCACTCTCGAAGAGCAGATTTTCACATTTGTCATAGCTCGGTTAGCGTACTAGTTAACGTTGCTCTTTGAAAATGGCGGATCTACCACCAGAGAAAAGCCTGGACGATTTCTTTGCCAAGCGggataaaaagaagaagaaagaaaaaggtaaGGGCAAGGAGTCCACCACCGGGCCCACGTCGGCTGTGATAAAAAAGAccaagagggagaaggagaaatCGGCGAAAAACGACAATCAAGACGCACAGATTGAAaagGACGAGGAATGGAAAGAGTTTGAGCAGAAAGAAGTGGACTACAGCGGGCTCCGGCTCCAAGCTTTACAGATAAGTGacgagaaagaggaggaggactaCGAGAAGGAGGAGGTTGGTGAGGATGGAGAGATCATTCTGGTCAGCGGAGACAAAGTGTCTGGTCCCTGGAACAAGTCTGGTGCTGCTCCAGCTCCTGCTGCTGCACCTGTGGAGGATGTAGAAGAGCCTGAGTCAAAGCCTTCTGGTGTATATCGCCCTCCAGGGGCTCGCATGTCCACCACCAGACGAGCTCCCACCCAGGGGCCTCCTGAGATCTTCAATGATGCACAGTTCCCCTCTCTACTGGCCACCGCCAAGCATGTGGAGACACGCAAGGACCGAGAAATGGAGAAGACCTTTGAAGTTGTGAAACACAGGAACCGTGGTAGAGAGGAGAGCGGCGGCGCCTCTATGCAGCAGTTGCAGCTTGACAACCAGTATGCCATCCTGGGGGATAAGTAGAGCAGCTCCCCACCGCCCCCTGGCCCCTTCAGCACGGTCCTGCCAAGCCCCTCGAAGGAAGCGTAACTCCAGCTGTGTTGACTGCAGTCCTGAAAAAGCTCATCTTGCCACCATCTTAACACTggttactaacacacacaaacacacacacacacacacacacacacacacacatagcctcatatacatacatacatacatacatacatacacacacataaacagcaATACCACTGCACCACATACAGTGACACTCCCTTTAAATAAATAGTAACACACTTTACATATATTGGTTGGCAAAACTGAAGGACTGCACCTTAAGGGGCTGTTGAAAGAGGGAAGAATTGAAAAGGAATTACACGCAAAATACACCCAAACGTACAacactgcagcagcaacaaTGGACGACGACATATTTGTCCTTTTGTGGATTGTACTCAGAGCAGCAGTTGTGTGGCGCAACGTTTCTCTGGACTTCATCTTGCTTTGATAAAGCCACAGAGGATAACTTTAGGCAAGATGATTTTACAAACTTCTGTGAAAATATCTATTTTTTTGCAAGATCGTTATAACCCAATCGCACATGGTAATTTGGGGTGTGTTTTTGAGTTGCGGTGGGGGGGCTTCAGGAGTGGGGATACTACCTCTGCAGCCTAGCTGGTGGTGACCATGTGgactgagctttttttttttttctcgctgTGGTGGTGAACGGGGCAAACAccagcccccctcccccccacataGAACCCGGCCATCAGGCTCTTTAGTTTAGAAACTTGaagctttgctttttttttctccttcatgACGATGACACTCTGCAAAGATCTATGGACAAGAAGTGATGGGTTGTGGTCCTCATTTAGAATTTCTATATTAAGTGGCCTTACTGATAGAGAAACTGCTTTGTCATCTGAAGAGAACTTGGCTTGTTGTCTCACGGGCTGCTGCCTGCCTCTGGTTCTCACCACTTTTTGACAAacaccccctccctctcccataTACAAACGAAGAAAATCCTTCTGTTCAAGAATGTAGTGTTGTAGTTTGCCTGATGATTACAACTACTAACTGTCTTTCATATCCACTGTTGGATTTTGCTGCCCCTACTTCATATTGGTCTTTTTAGACATCAGCAAAAGAGAaattaaagcttgtttctaatCTAAAACCATTCTTTTAgtaacaaatgctttactgtgGTTTGACACCAGATGGTCACAGATGTTACAGTATCAAGAAAAATGACAGGAAACCAAACTACTTTAAAAGCGTATTTGTTGAGGTAATTTGGTTCACAACTTTTATAATTTGTTGTAAAGTGGTGTAGTTttaagacttttcttttttttttaaatcaaggctttTCCTCATGAGTAAACGTGCTGTGTCAGCCCTTGTTGCAGTTGTGTAGAACCGGTAGCTTGTGCATAACTTAATTTCCAGAGAGTTACAGTGACTCCACGTCTGTGAAAACAAATGTCACCAAACCAACGGAGTACTGTCCACTTAACAAAACAGTGGTATGCCCAGTTGAAATCAAATGAGGTTTTACTACAAACATAGTTATGTTTTAGAAAGGTGAAGAACTGGATTTATGTTCTGTTTCAGTCCTTTCCATATAAGATGTCGGGGAGCGTTGATCTCTGCTGGAACACTTTGGGTGGACGTAGATAATATTTGTGATGAAAAGAGAAGAgcctaacacaaaaaataaagtgatcCTTGTGACTGAAGTCTTGTCTGAATCTttaaacattgaaaatggggatttactgtatacagtgtctttttttccataaaagGTGTTGTCTAATTGTAAACTTGACACTTGTGTTAACCTGCTATGCCTCCCATAATCACTTATTTAGTGTCTCGATTTGACCAATCATGGGAAATTTATCAAAAGTTCCAGCGCTTTTTGAAAAATGACCTTATACCAAGGATattaacaaataaaagaaattttCTCACA

Function

symbol description
cdv3 Predicted to be active in cytoplasm. Is expressed in several structures, including alar plate midbrain region; immature eye; midbrain; myotome; and retina. Orthologous to human CDV3 (CDV3 homolog).

NR:

description
PREDICTED: protein CDV3 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039789853.1 True 2907 mRNA 0.44 5 19949981 19954961
XM_039789854.1 False 2903 mRNA 0.44 5 19949981 19954960

Neighbor

gene id symbol gene type direction distance location
kif9 NA coding downstream 41905 19889682 ~ 19908076 (-)
si:ch73-173p19.1 LOC103363515,LOC104954586 coding downstream 283261 19658889 ~ 19666720 (-)
chpf2 chpf2 coding downstream 301180 19639856 ~ 19648801 (-)
asap1b asap1 coding downstream 364533 19518530 ~ 19585448 (-)
fam49bb fam49b,LOC104954579,LOC105915818,LOC103377397,LOC107085391 coding downstream 435944 19475880 ~ 19514037 (-)
tmem108 LOC107589950 coding upstream 3323 19958284 ~ 19999250 (-)
topbp1 topbp1 coding upstream 47495 20002456 ~ 20018989 (-)
LOC120552713 dnajc13 coding upstream 65172 20020133 ~ 20055209 (-)
prpf4bb prpf4b coding upstream 224595 20179556 ~ 20190506 (-)
LOC120552510 cdh7 coding upstream 617247 20572208 ~ 20732251 (-)
G221183 puf60 non-coding downstream 131866 19814070 ~ 19818115 (-)
G221182 NA non-coding downstream 138846 19808752 ~ 19811135 (-)
LOC120551913 NA non-coding downstream 195473 19724099 ~ 19754508 (-)
G221150 NA non-coding downstream 198687 19750105 ~ 19751294 (-)
G221160 NA non-coding downstream 230359 19718448 ~ 19719622 (-)
G221287 tmx3,LOC102777948 non-coding upstream 213720 20168681 ~ 20262155 (-)
G221293 pxdc1,LOC104939983 non-coding upstream 252777 20207738 ~ 20213258 (-)
G221359 NA non-coding upstream 514185 20469146 ~ 20469453 (-)
G221385 NA non-coding upstream 612598 20567559 ~ 20567784 (-)
G221400 NA non-coding upstream 731229 20686190 ~ 20758774 (-)
G221048 ankh other downstream 623087 19315591 ~ 19326894 (-)
mettl4 mettl4 other downstream 1000486 18938913 ~ 18949495 (-)
LOC120552352 colec12,LOC102798044 other downstream 1139037 18772977 ~ 18810944 (-)
G220833 NA other downstream 1252011 18610236 ~ 18697970 (-)
si:ch73-174h16.4 LOC103364270,LOC104947970 other downstream 1466205 18426762 ~ 18483776 (-)
LOC120552536 fbxl7 other upstream 880217 20835178 ~ 20862688 (-)
rbis LOC101064519,LOC103367294,LOC102312013 other upstream 1262719 21217680 ~ 21221667 (-)
tfr1b NA other upstream 2035056 21990017 ~ 22011086 (-)
LOC120552473 NA other upstream 2159421 22114382 ~ 22120611 (-)
smpx smpx other upstream 2247806 22202767 ~ 22218381 (-)

Expression


Co-expression Network