cdk8 (cdk8)


Basic Information

Item Value
gene id cdk8
gene name cdk8
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 16030459 ~ 16038837 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039789937.1
TGTCTTCACGACGTTTTGCGACAGTGCCGTGCGCGAATACGGCGTCGTTACCGAGTGAAGTGCGTCTCTTTGGAGCAGATACCGGCTGAGAGAAACGCAGCAACAAGAGAAAGGAATATATTTCGGGCTCGTTTTTCATCTGGGTTATCTCCGGGCACCGCGCATCTCATCCGGTACAAACAATTTAACCCAAAAACTCGATGTGGAAGCTgggctgaaagaagaaagggCCACAGTGGGGACGGCAACTAGCCGAATTACTAAATCGAGCTCGTTGAAGTAGCCTAGTTGCCTCCCAAGCGAcgctttaaaaaaaggaaggaggGGATATATTGAGCCCAAACAGTGGTGAAAATGGACTATGATTTTAAAGTGAAGCTGACCGGCGAAAGAGAGCGTGTCGAGGACCTGTTTGAGTACGAAGGATGCAAAGTGGGACGAGGCACCTACGGTCATGTTTACAAGGCGAAGAGAAAAGATGGGAAGGATGATAAGGACTACGCCCTCAAGCAGATTGAAGGCACTGGCATCTCCATGTCAGCCTGCAGAGAGATTGCACTGCTGCGGGAGCTGAAGCACCCCAACGTCATCTCACTGCAGAAAGTGTTCCTGTCACACGCAGACCGTAAAGTATGGCTGCTGTTTGACTACGCTGAGCATGATCTCTGGCACATTATTAAGTTCCACAGAGCATCCAAGGCCAACAAGAAGCCACTTCAGCTGCCCAGAGGAATGGTCAAGTCTCTGCTCTACCAGATCCTGGATGGCATCCATTACCTCCACGCCAACTGGGTCCTCCACAGAGACCTTAAACCAGCTAACATTTTAGTGATGGGGGAAGGGCCAGAGAGGGGTAGAGTAAAGATTGCGGACATGGGGTTTGCCCGTCTCTTCAATTCACCGCTGAAGCCTTTAGCCGATCTCGACCCTGTCGTGGTCACCTTCTGGTACAGAGCACCTGAACTACTGCTGGGGGCTCGGCACTACACCAAAGCCATCGACATCTGGGCGATTGGCTGCATCTTTGCAGAGCTGCTGACATCTGAGCCCATATTCCACTGTCGCCAGGAGGACATCAAGACTAGTAACCCTTACCACCACGACCAACTGGACCGCATCTTTAACGTCATGGGCTTCCCTGCTGATAAAGACTGGGAGGACATCAAAAAGATGCCCGAACACTCCACGCTGATGAAAGACTTTAGAAGAAACACATACACGAACTGCAGCCTTATAAAGTACATGGAAAAACATAAAGTCAAGCCAGACAGCAAAGCATTCCACTTGCTGCAGAAGCTGTTGACCATGGACCCCATCCGTAGAATCACGTCTGAACAGGCCATGCAGGACCCCTACTTTTTGGAGGAGCCCCTGCCCACCTCTGAtgtgTTTGCAGGCTGCCAGATCCCCTACCCCAAGAGGGAGTTCCTGACAGAGGAGGAGCCGGAGGACAAGGCAGACAAAAAaaaccagcagcagcaacagggaAACAACCACACGAATGGGGCGGGGCACACTGGCAACCCTGACAACAGCCATGCCCAGGGCCCGCCTCTGAAGAAAGTGCGGGTTGTCCCACCCACCACTACCTCAGGTGGCCTCATCATGACCTCAGACTACCAGCGCTCCAATCCACATGCTGCCTATCAGAACCCTGGACCAAGCACATCACTGCCCCAAAGCAGCATGGGATACTCCTCTACCTCCCAACAGCCGCCCCAGTACTCCCACCAGACCCACCGCTACTGAGACCAccccttccacacacacacatacgtacatacacttatacacacatatataaacgcATACACAGCCCGCACCATGCCCACCCACCTGAACAAATGTACTGAGGGATGTGGGATGTCCAAGGCAACAAAACAACCCTGCTCTACCCCACAGAGGGCACTTTCTCTGCAGCAGTCTGTTAGGTCAGAATTACAGCAATCTACACTTCTTCAAGATGACACACCCATAACCCCAGTATTAAACACACCGCTAGAGAGCAAAACCTGATGGGTGAAACTCAAGGTGGGAGAATGAGAAGAATGGATACTATGGTGATATCCAACCTGTTTCTGTTACTCAGATGTAATCAAACCAGCCGTGAGAAGATGGCTTGGTTTGGGGGGGGGTGACACGTGTTAATCTGCTGTTATCtcctccccttttttttctccacctgtctccacacccccacccacaccctACCCCAGCCAGTTACCCTCTTCTTGTTGAAGCTTGGATGAGACTGAAAGCTATGTGACTGCCAGCAGTGACAGTTTTCCCTGTCCAACtgtcctcctgtctgtctgtctgtccgtctgtctgtctgtttattttgtgtgtgcgcCCCTGTGATGCCTCAGCTGAGGACTAAACTGAGCTGCTGTGAAGCATGCTGGGCAGATGTGGAGCCCCCACAGCTGTGGCGATGAGGGTTTTTGTTcagaaaggacaaaaaaaagattttagtaGTTTATAATTTAATCAGTTTTCATGGTTTTGTTTTCATGGCAAGTGTGGGAAAGCAGCTGCTGTATGCTGTGGGCAAGCCTTAGAACATGATGACAAACCAACCAATCGCATGGAGGATGGCAGATGGAACATGCATTGTACTGTATTGAAATATTTTACATGAAGCAAGTATCCTGacaataaaagtaaaaactttGATATTG

Function

symbol description
cdk8 Predicted to enable RNA polymerase II CTD heptapeptide repeat kinase activity and cyclin-dependent protein serine/threonine kinase activity. Predicted to be involved in protein phosphorylation. Predicted to act upstream of or within phosphorylation. Predicted to be part of mediator complex. Predicted to be active in nucleus. Orthologous to human CDK8 (cyclin dependent kinase 8).

NR:

description
cyclin-dependent kinase 8

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0008353 RNA polymerase II CTD heptapeptide repeat kinase activity molecular_function

KEGG:

id description
K02208 CDK8_11; cyclin-dependent kinase 8/11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039789937.1 True 2681 mRNA 0.50 13 16030459 16038837

Neighbor

gene id symbol gene type direction distance location
wasf3b wasf3,LOC102784165 coding downstream 1312 16014613 ~ 16029147 (-)
rpl21 rpl21 coding downstream 29918 15997075 ~ 16000541 (-)
gtf3ab NA coding downstream 39071 15988154 ~ 15991388 (-)
pdx1 pdx1,LOC102786186 coding downstream 63085 15964337 ~ 15967374 (-)
pan3 pan3 coding downstream 79609 15935625 ~ 15950850 (-)
LOC120551886 shisa2 coding upstream 65291 16104128 ~ 16111485 (-)
LOC120551982 usf3 coding upstream 131142 16169979 ~ 16180202 (-)
naa50 naa50,LOC106579447 coding upstream 141603 16180440 ~ 16184405 (-)
ccdc191 ccdc191 coding upstream 178321 16217158 ~ 16228750 (-)
si:ch211-161h7.8 LOC104965030,LOC103368931 coding upstream 247660 16286497 ~ 16288328 (-)
G220048 NA non-coding downstream 96190 15881506 ~ 15934269 (-)
G220031 NA non-coding downstream 96645 15857651 ~ 15933814 (-)
G220042 LOC100701814,LOC101478750,LOC102788341,LOC102295400,LOC103362138 non-coding downstream 159165 15870720 ~ 15871294 (-)
LOC120551922 NA non-coding downstream 253531 15773677 ~ 15776928 (-)
G220000 NA non-coding downstream 267749 15762479 ~ 15762710 (-)
G220171 NA non-coding upstream 79116 16117953 ~ 16118588 (-)
G220203 NA non-coding upstream 169421 16208258 ~ 16209541 (-)
G220211 NA non-coding upstream 225740 16264577 ~ 16264785 (-)
G220243 NA non-coding upstream 298981 16337818 ~ 16339037 (-)
G220254 NA non-coding upstream 326367 16365204 ~ 16366613 (-)
G220117 usp12,LOC107701680,LOC107705210 other downstream 25695 16003879 ~ 16004764 (-)
si:ch211-140b10.6 polr1d other downstream 56796 15968731 ~ 15973663 (-)
mtfr1 NA other downstream 349571 15676254 ~ 15680888 (-)
LOC120552366 NA other downstream 477405 15539203 ~ 15553054 (-)
G220124 NA other upstream 25833 16064670 ~ 16065221 (-)
drd3 drd3 other upstream 227466 16266303 ~ 16284735 (-)
LOC120552205 LOC100711537,LOC102295084,LOC108230444,LOC106948898,LOC103140410 other upstream 743235 16782072 ~ 16795124 (-)
G220412 csrnp1,LOC104937158,LOC102793366 other upstream 835812 16874649 ~ 16875300 (-)
si:ch73-174h16.4 LOC103364270,LOC104947970 other upstream 2387925 18426762 ~ 18483776 (-)

Expression


Co-expression Network