topbp1 (topbp1)


Basic Information

Item Value
gene id topbp1
gene name topbp1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 20002456 ~ 20018989 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039789949.1
TTAGCGGGTAGTACCGGAAGTTACGCAGTTGGCGCGAATAATAACAACAAAGCTGATATTTTAATTTCGCCAAGCTATTATCagtacatttttacacaatgtATATTAATTCCCTCAATGCTGTGGAGACTAGTAACCGTTCGTTTCTGATAACATGAATACTAATGGTTTTTGAAGCGTTTTTAACGTTATATATGCTTGTTGGAACTGTCTCTCTGTTTTGCTGACAGTCCATCAAGAGGAGGTTAGCCATCAGTTtagttagctaacattaacgtAAAGGACGATTTTAAAGTTGACCATGTCCAAAGGAGACAGAGAAGGCTTCATTGTGAAGTTTGTGGAATGTAACGCTAAAGGACAAAACAAAGAGTATGCTGTCAAGGCTTATGAGGCCATTTTGGAGCTGCAGTCTGACAAGTACTTGAAGACCGTCGATGAAGatgcagttttacagatggacCAGAAGGACAAGTCTCTGTTTGTCTTCAGCAGCTTCACTACCCCCGCCTTTCTGCACTGCAAAAAGCTTGGCTGCCGAGTGGTGAGTCCACTGGTGGTGTTGTactgcctgcagcagcagcattgtGTCCCCAAAGCAGAGAAGCCCGTCTATAACATGGCCATGGCTGACATCACTATTTCCTGCACCAGTCTGGATAAAGCAACCCGGaCAGAGGTGATGGATCTGGTGCAACTCATGGGTGGACGGGTCTATCTTGACTTAAATGTATCTGTCACACACCTGATAGCAGGAGAGGTGGGCAGCAAGAAATACCTGGTGGCTGCCAGCCTGAGTAAACCCATCCTGCTGCCCACATGGGTCAAAGCATGTTGGGAGAAATCTCAGGACAGTCTTTTCAGGTATACTGATCTACCCATTGAGGACTATTTGTGCCCTGTGCTGCGTGGCTGTACTATTTGTGTGACAGGCCTCTCCAGCACAGAACGTAAAGAGGTGCAGCGACTCTGTGATCAGCATGGAGCCAACTACACTGGTCAGCTCAAAATGAATGAGTGTACACACCTCATCGTTAGTGAGCCAACAGGTCAGAAGTACGAGTGTGCAAGGAAGTGGAATGTGTATTGCGTGTCTCTGCACTGGCTGTTTGACAGCATAGAAAAGGGCTTTTGTCAAGACGAGACCAGGTACACTGTGGAGCGTAACGCATCAAAGACCACTCGACCGCACACTTCCACTCCCACTGGCACCAACAGGAAGGAGGAGGGACCATCTCTGTTGGGCTTGAGCCACATCTCTGTCAATGCTAGCATGACAGTTAATGACACAGCCCTCACCAACGCCACCGTCAGCCGCCTGGAAGCTCCAGACCCCATAGATACTCTGGATCTCACCGTCTGCCCAGCTGATGATATACTGGATGGCTGTaagCTGTATCTGTGTGGCCTGCCAGGGAAGAAACTGGAGAAGCTGCGGCGTCTTGTGAACTCTGCAGGAGGTCTGCGCTTCAACCAGCCCAGTGAGGAACTCACACATGTGGTCATGGGAGAGCTGGACCAGGACCTCAAGAGTTTTCTGTCCAAAGCAACACATAGACCCCATGTAGTAACAGTGCAGTGGCTGCTGGACAGTTTCAGCAAAGGCAGTCAACTCCCAGAAGCAGGTTACCTCCACCCCGACTGTCTGCCCCCGACTCCGGCTGCTGTATTTGTGCCTGCCCGTCACACTCCGGCCTCTCGGCATTCAGACGGTCCCCCCGCAGCCAGTCCTAGCACTCCTAGGCAAACAAGAGCCGAGGAAGATCTGCTCTCTCAGTACATGGATGATGACCCTACAGTAGTGGACATGGCCCAACCAGCAGAGGTCAACAGCAGGAAGTCCATCAGTACATCTGCTGAGCCTTGGGCACCAAACCACTCCAGAGGACCAGAGCCAGACTCAACCCTGCAGGAAGCCACCGAGGCAGGCCTATTTTTTGGGAAGTGTTTCCTTCTTGTGGGCTTTGGCACTGAGGAAGAAGCCCAGCTCTCTCTGCTGGTGACAGAAAATGGAGGCAGGGTGCTGATGGGCCGTACACGTGTCGTGGCAGACTATGCAGTGGTCCCACTGTTGGGCTGTTCAGTGGAGGCCACAGTCGACGAAGTGGTCACTGATACCTGGCTGGCCATGTGTGTGGAAAAGGAGTCTGTTCTGCAGCTGTCCTCCAACCCTTTGTTCACACCTGTTCCTGTGATGGACGGGCGTTTCCCTCTCAAAGATTGCGTTCTCTCTGTCAGCCAGTTCACCGGAGCAGAGAGGGAGTCTTTGGTGGAGCTGGCCAAGCACCTTGGAGCCAATGTCCAGGATTACTTTGTGCGCCTGGCGAACCAGAAGAAAGGGATGCTGGCCAGCACTCATCTGGTGCTGCAGAGCCCTGAAGGCACAAAATACCAGGCAGCAAAGAAATGGGGGTTTCCAGCCGTCACCATGCGCTGGATACTAGAGTCTGCTCGGACCGGCCAGAGGGCAGAGGAGGGACGTTTTCTAGTTGACCTGCCACCCTCCCCAGagaGGGATGATGAGAGTTTTGTCGGTGGTTCCCAGAAGCCTGCCATGCCTCCACCAGCCTGTTTGTCTCCAGAGATCCCTTTGCTGGGTCTCCAGAGCGGTAAGGCCGTTACCCCGCTGGATTTGGGTCGCTTCCAGAGCAAAGTGTTCCACTCCGTGTTGGATGAAATGAAACCCAAACAGGACATCAGCACCCCCAAACAAAACCAAGAGGGCGGCAGAAGGAACCCCTTTCAGAAGGAAGCCTCCCTGCAGCTGGACACTCCCTCTCGTTTCCTCAGCAGAGACCAGCTGTTCAGGCCCTCCTTCAATGTCAAGGATGTACTAGGAGACTTGGAGACCCCAGGGGGAAGAACCAAACCAGGAGAGAGGGTGGAGACTCCACTGACTGATGTTGTCAGCAGGACTCTGCAGGTGGCTCTCGCCAACAGCTCCCGAAGTACCGCCTCAGATATGCAAGCCATCTCTGCTAGCCCCCAATTTACCAAGACAACTGAGAAGGAGGTCACGGAAAAAGAAGCCGGCCCTCTGACTGGTGTTGTGATCTGTGTGGGAAAGAAGCTGAGCAAAATGCAGGGTGAACTCAATGCCATCGCTGCCTCGCTTGGAGCAGACTTCAGGTGGGCTTGTGACGATACAGTGACACACTACATCTACCAGGGCCGTGTGGGGGACAACACCCGGGAATATAGGGGAGTGAAGGAGAGAGGACTGCATGTGGTCTCCCAGTACTGGCTGCAGGCTTGTGCTGAGGAGCAGAGGCACGTCCCAGAGTCTCTGTATCCTTTCACCTACAACCCCAAGATGAGCCTAAACCTCAGCCAGGTGCCCAACAGCTCTCAGAGGTCTCCTCCTTTTACACGAACCCAACTCAAAGACATCTCTGAGGCAAATGACGACAAGTGTGATCACATTGCCACGAAAGAAGCCACATCGCGTCGTGTAAGCGATGGAAGCGTAGATCAAGAAGAGATGAATGAAACTGCAGATAGAACTGATATTTCAGAGACTCTAGAAATGAGAGAGAACCTGCAAAGACAGCTCCAGGAGATCATGTCAGCCACCAAGCTAACGACAGGGAGGCGTACCTCAGTCCGACTTACCAGGATGGGATCAGGAGGGGCCGACTCGGGCCCCCACACACCTGATGGGAGTCGGTTCGGACGCTGCGGGAGCAGACGTACTCTGGAAGCTCTGAGGGTTACCAGGGAAGCAGCTATGGACATAAACACAGAGCCATCTCAGAGTGAACAGATAGTTTGGGATGACCCTACAGCCAGGGAGGAGAGGGCCAAGCTTGCTGATAATTTACAGTGGCCTGGTAGTCCCTCACAACACTCTGAGCCCGTCgcacctccacctcctcccacTGCAGAAAACGGCTCTCAGTTCAGGGACTCCATGACCGACTCTGAGCTGGTGGAGATGGCTGCTTGTGACATCATCGACCAGCACATGGGCCAGAGAGTCACAACGTCTCCAACAGAGAAGCGTGGAAATGACATTCTCACTCCTAATGCCCCCAGCATCGCCTTCCCTATCGCCAACCCCCCAGTAGTACCGGAGCCACAGgaGGAGCGTGCGGAAGAAAAGCAGCCACCCAGATTTCAGCTGTCCTCCCTCAGCCCTCAGGAACGCATTGATTACAGTCACCTAATAGAGGAGCTTGGTGGTGTGGTCCTGGACAGGCAGTCTTTCGACCCCAGCTGCTCGCACATCATCGTAGGGACTCCTCTGCGCAACGAGAAGTACCTGGCAGCAATGGCAGCAGGCAAATGGATCCTGCACCGCTCGTACCTGGAGGCCTGCCGCTCTGTGGGTCGCTTCATCCAGgAGGATGAGTATGAGTGGGGCAGTAGCTCCATTCTGGATGCGTTGCCCTCCATCAACTCCCAGCAGAGGAGACTGGCGTTAGCTGCCATGCGCTGGAGAAAAACCCTGCAGGGATGCTCTGAGCAAGggggagCCTTCAGTGGATGGACGGTCATGCTGAACATCGACCAGAGCAGAGAATCAGGCTTCAGGCGGTTACTGCAGTCTGGCAATGCGAAGGTCCTGCCGAGTCCCTCCCCGTCCTTGTACAAGGAGACCACTCACCTGTTTGCAGACTTTGTTCGGCTGAAGCCTGGAGACTTCAGGGTCAATGTGTCGGAGGCTACCTCCCTCGGAGTCACATGCTTGAAGCCAGAGTACATCGCAGACTACCTCATGCAGGAGCCAATCCCGCCTATCGAGCTGTACTACCTGACTGACGCTTCCTCTGAAGAAGCGCCAGGCACTCCGTCACGTAAGCGCAAAGCCACAGCAGACAACTCCCGGCTGAAAAAAACACGTCTTAACTAAATTGTCACTTCTAAATATTGTCATTAAAATTCACATATCTGTGGAAATGATGGAATTATTGTAAATAagatgttttgtgtctcttatataaaaaaataaaataaatgttttgtta

Function

symbol description
topbp1 Acts upstream of or within cellular response to DNA damage stimulus; definitive hemopoiesis; and regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator. Located in nucleus. Is expressed in caudal fin and head. Orthologous to human TOPBP1 (DNA topoisomerase II binding protein 1).

NR:

description
DNA topoisomerase 2-binding protein 1

GO: NA

KEGG:

id description
K10728 TOPBP1; topoisomerase (DNA) II binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039789949.1 True 4967 mRNA 0.53 28 20002456 20018989

Neighbor

gene id symbol gene type direction distance location
tmem108 LOC107589950 coding downstream 3206 19958284 ~ 19999250 (-)
cdv3 cdv3 coding downstream 47495 19949981 ~ 19954961 (-)
kif9 NA coding downstream 94380 19889682 ~ 19908076 (-)
si:ch73-173p19.1 LOC103363515,LOC104954586 coding downstream 335736 19658889 ~ 19666720 (-)
chpf2 chpf2 coding downstream 353655 19639856 ~ 19648801 (-)
LOC120552713 dnajc13 coding upstream 1144 20020133 ~ 20055209 (-)
prpf4bb prpf4b coding upstream 160567 20179556 ~ 20190506 (-)
LOC120552510 cdh7 coding upstream 553219 20572208 ~ 20732251 (-)
LOC120551976 LOC100696589,LOC106947338,LOC106912688,LOC104946573,LOC103147557,LOC103456804 coding upstream 716037 20735026 ~ 20741393 (-)
LOC120552480 LOC103356684 coding upstream 728758 20747747 ~ 20758794 (-)
G221183 puf60 non-coding downstream 184341 19814070 ~ 19818115 (-)
G221182 NA non-coding downstream 191321 19808752 ~ 19811135 (-)
LOC120551913 NA non-coding downstream 247948 19724099 ~ 19754508 (-)
G221150 NA non-coding downstream 251162 19750105 ~ 19751294 (-)
G221160 NA non-coding downstream 282834 19718448 ~ 19719622 (-)
G221287 tmx3,LOC102777948 non-coding upstream 149692 20168681 ~ 20262155 (-)
G221293 pxdc1,LOC104939983 non-coding upstream 188749 20207738 ~ 20213258 (-)
G221359 NA non-coding upstream 450157 20469146 ~ 20469453 (-)
G221385 NA non-coding upstream 548570 20567559 ~ 20567784 (-)
G221400 NA non-coding upstream 667201 20686190 ~ 20758774 (-)
G221048 ankh other downstream 675562 19315591 ~ 19326894 (-)
mettl4 mettl4 other downstream 1052961 18938913 ~ 18949495 (-)
LOC120552352 colec12,LOC102798044 other downstream 1191512 18772977 ~ 18810944 (-)
G220833 NA other downstream 1304486 18610236 ~ 18697970 (-)
si:ch73-174h16.4 LOC103364270,LOC104947970 other downstream 1518680 18426762 ~ 18483776 (-)
LOC120552536 fbxl7 other upstream 816189 20835178 ~ 20862688 (-)
rbis LOC101064519,LOC103367294,LOC102312013 other upstream 1198691 21217680 ~ 21221667 (-)
tfr1b NA other upstream 1971028 21990017 ~ 22011086 (-)
LOC120552473 NA other upstream 2095393 22114382 ~ 22120611 (-)
smpx smpx other upstream 2183778 22202767 ~ 22218381 (-)

Expression


Co-expression Network