LOC120552199 (yme1l1)


Basic Information

Item Value
gene id LOC120552199
gene name yme1l1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 21303789 ~ 21312913 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039790017.1
GTCATATTGTAGTCCATTTGACCTCGGATGCCGGAGAATCCATTTGCTGTTATTTAGCTAAGCTGCTGAAAGTTGTGTAACAACAAGGGAAACAAAAAGGACACCGCTCCCGGGAGGACTCGTTCGTTTGAGTTACATAGAGGGTCTCTCCTCACACATCAACCCCCCCAACTCCTGATTTTGAGTTATCATTGGGCAAAAATGTTTTCACTGTCAACGTGTTTTCAGCCACAGCAGATGATAGTGCCCCTCAGCCAGCTCATCAATGCCCTCCACTCTCTGAAGAACTCAGCCACAGCTTCAGTCCAGGCCCTGCACAAAGATTTCATTCCAGAGCACAGTTCATATCTAAGAGAGCCCAGTGTGAGTCTGAGGGACCTCGGCCTGTCGGAGATCAGGGCGAGTCAGCTGGATGAGCTGGTCAGCAGGTTACTGCCTATCCCCGGGCCAGAAGAGCCTCCCGCTGTTCCTTCCATATGGAGGTCGAGTCACGTTTCTTCAGACAGCTTCTTTCACAACAAGCATGGGTTTTCACACAGAAGGTTGGGTGTTTTTGGCTCCCCAATATTCCACAGACAATACCACAGTCCTCTAAAAGAAGCTTGCTCAGAGCTGCAATTCTTACCCGTATGGATCCAGAGTCGGGGTTTCAAGACACTTAAATCAAGGACCAGACGGACAGAGTCTGGTTATGACGGTCCGGTAGAGTCCGAGGCCTACACACCAGCCTTCATGAAGGGATTGCTTCAGAGGGAAAAGGCACCAGAAGCCCAATCACTGGACGAGCTGCTGAAACAAAAGCACCTTCCAGATAACCAGCAGGAGGCTTTCAAGACGGGGTTCACCGAGGGGTTCATGAGGTCTCAGGCCTTCACTCAGAGAACACAAGCCTCGCTGAGGAGAACCAGGATTATCCTGTTGGCTCTCCTACTTCTTGGTATTTATGGCTTGTCAAGAACCCCGTTTCTCTCGGGTAAAGGCTCCTTTTCTGATGCTGTGAGGTTCCGCACCACATCTGGTCTTGACTCAGCAGTCGACCCCATCCAGATGAAGAATGTGACATTTGAGCACGTCAAAGGAGCAGAGGAGGCGAAGAATGAATTACAAGATGTTGTGGATTTTCTCAAGAACCCCGAGAAATTTACTGTTCTGGGCGGAAAGCTGCCTAAAGGGATCCTCCTTGTTGGTCCACCAGGCACAGGAAAGACTCTGTTAGCACGGGCTGTGGCTGGGGAGGCTGATGTGCCTTTCTACTACGCCTCCGGATCAGAGTTTGATGAGATGTTCGTGGGCGTTGGTGCGAGTCGAATCAGGAACCTTTTCAAAGAGGCAAAAGCGAATGCTCCTTGTGTTATCTTCATTGATGAGCTGGACAGCGTTGGCGGAAAGAGGATCGAGTCTCCAATGCATCCCTATTCTAGGCAAACCAtcaaccagctgctggctgaaATGGATGGGTTTAAACCAAACGAGGGCGTCATCGTTATTGGTGCTACAAACTTTGCAGAGGCTTTGGACACCGCTCTGGTGAGGCCAGGAAGGTTTGACATGCAGGTGACGGTCCCTCGTCCCGATGTGAAAGGACGCACTGAAATTCTCAACTGGTACCTCTCGAAGATCAAAATGGACCCTGCTGTGGAAGCGGAGATTATTGCCCGGGGCACGGTGGGCTTCACTGGGGCAGAGCTGGAGAACCTGGTCAACCAGGCGGCCCTGAAGGCAGCCATGGACGAGAAAGAGATGGTCACAATGAAGGATCTGGAGTTCGCTAAGGACAAGATCCTCAtggGCCCTGAGAGGAAGAGTGTTGATATCGACAAGAAGAATAAGACCATCACAGCCTACCATGAGTCCGGCCATGCTATTGTTGCCTATTACACCAAAGATGCAATGCCCATCAATAAGGCCACCATCATGCCTAGAGGTCCAACTCTTGGCCACGTGTCCATGCTCCCAGAGAATGACCGTTGGAGTGAGACCAGAGCCCAGCTGCTGGCTCAGATGGATGTCAGTATGGGCGGCCGAGTAGCAGAGGAGCTCATCTTTGGAGATGATAACATCACCACTGGAGCCTCCAGTGACTTCGATGGAGCAACCAAAATAGCAAAAATGATGGTGACCAGGTTCGGCATGAGTGACAAGCTTGGTGTCATGACCTACGGCGACGTGACCAAGCAGAGCCCCGAGACACAGGCTGCCATCGAGCAGGAAGTCAGGGTTCTACTGAAGGACTCATACGAACGTGCTAAAAACATCCTGAAGACGTACAACAAGGAGCACAAGAAGCTAGCTGATGCCCTGCTCGCATATGAAACTCTGAATGCCAAGGAGATCCAGATGGTGCTGGAGGGCAAATCATTGGACCAGCAGATACCTCAGTAGATATTTTTGACTCTTGTATCATGTATATATATGAAGCTGTGCACAGGGCTTTTGGAGGCCTTGTATTTCATTTGTTAGTAACCATCTTATTATCGATGTGAAGATTAAAGGATTAAGTTTCACCCCTTATAaaccttttattattattttaatttgtcttGCATTTCCTGTAGCAaagacttttggtttcacagtGATTTTAAAAGCACCCAGTTTAATtggataaaaaaatacatatttggtCTCCAGAAGTCTGCTACAGTCAAAGATGTTTGAGGTGTCATGAGGGGCTTCCTGTGCTCTACTCTCAAGACAAATGACATCTATAGAActttttgattcatcagtcatATTTGGTATCATAACAAGgttatactgtaaatgtattaaGGTGAGATGAATGATTTCCCATATGTCTATGtctcattttaaatgtgtacagaCCGGTGAACACCATAGAACCTTAAAATACCTCAATCTAGAATGTACCATCTGGCTGTAGCAAAGTACAGGTGataccactgctcattttagaGTTTTTTTCTCTAAATTATATATTTCAGTTGCatctattttgtttatttatttaagtgcCCAAAGGTGTGTTCTTTTTCTGAAATTAGTGATCCTCACGCCCTATTCTAAGCCCACGTGTAGCTGATAAATGAGGggaaatgtatgtatatacacacacacacacacacacacacactataaacgTGTAAAAGGATTGGCTTTGTGCTTCAGTTTGTTCTTTGAGACAAAGACCTTGGAGCTCAAATAAAGGTTATCCTTGCTCATGAA
>XM_039790018.1
GTCATATTGTAGTCCATTTGACCTCGGATGCCGGAGAATCCATTTGCTGTTATTTAGCTAAGCTGCTGAAAGTTGTGTAACAACAAGGGAAACAAAAAGGACACCGCTCCCGGGAGGACTCGTTCGTTTGAGTTACATAGAGGGTCTCTCCTCACACATCAACCCCCCCAACTCCTGATTTTGAGTTATCATTGGGCAAAAATGTTTTCACTGTCAACGTGTTTTCAGCCACAGCAGATGATAGTGCCCCTCAGCCAGCTCATCAATGCCCTCCACTCTCTGAAGAACTCAGCCACAGCTTCAGTCCAGGCCCTGCACAAAGATTTCATTCCAGAGCACAGTTCATATCTAAGAGAGCCCAGTGTGAGTCTGAGGGACCTCGGCCTGTCGGAGATCAGGGCGAGTCAGCTGGATGAGCTGGTCAGCAGGTTACTGCCTATCCCCGGGCCAGAAGAGCCTCCCGCTGTTCCTTCCATATGGAGGTCGAGTCACGTTTCTTCAGACAGCTTCTTTCACAACAAGCATGGGTTTTCACACAGAAGGTTGGGTGTTTTTGGCTCCCCAATATTCCACAGACAATACCACAGTCCTCTAAAAGAAGCTTGCTCAGAGCTGCAATTCTTACCCGTATGGATCCAGAGTCGGGGTTTCAAGACACTTAAATCAAGGACCAGACGGACAGAGTCTGGTTATGACGGTCCGGTAGAGTCCGAGGCCTACACACCAGCCTTCATGAAGGGATTGCTTCAGAGGGAAAAGGCACCAGAAGCCCAATCACTGGACGAGCTGCTGAAACAAAAGCACCTTCCAGATAACCAGCAGGAGGCTTTCAAGACGGGGTTCACCGAGGGGTTCATGAGGTCTCAGGCCTTCACTCAGAGAACACAAGCCTCGCTGAGGAGAACCAGGATTATCCTGTTGGCTCTCCTACTTCTTGGTATTTATGGCTTGTCAAGAACCCCGTTTCTCTCGGTGAGGTTCCGCACCACATCTGGTCTTGACTCAGCAGTCGACCCCATCCAGATGAAGAATGTGACATTTGAGCACGTCAAAGGAGCAGAGGAGGCGAAGAATGAATTACAAGATGTTGTGGATTTTCTCAAGAACCCCGAGAAATTTACTGTTCTGGGCGGAAAGCTGCCTAAAGGGATCCTCCTTGTTGGTCCACCAGGCACAGGAAAGACTCTGTTAGCACGGGCTGTGGCTGGGGAGGCTGATGTGCCTTTCTACTACGCCTCCGGATCAGAGTTTGATGAGATGTTCGTGGGCGTTGGTGCGAGTCGAATCAGGAACCTTTTCAAAGAGGCAAAAGCGAATGCTCCTTGTGTTATCTTCATTGATGAGCTGGACAGCGTTGGCGGAAAGAGGATCGAGTCTCCAATGCATCCCTATTCTAGGCAAACCAtcaaccagctgctggctgaaATGGATGGGTTTAAACCAAACGAGGGCGTCATCGTTATTGGTGCTACAAACTTTGCAGAGGCTTTGGACACCGCTCTGGTGAGGCCAGGAAGGTTTGACATGCAGGTGACGGTCCCTCGTCCCGATGTGAAAGGACGCACTGAAATTCTCAACTGGTACCTCTCGAAGATCAAAATGGACCCTGCTGTGGAAGCGGAGATTATTGCCCGGGGCACGGTGGGCTTCACTGGGGCAGAGCTGGAGAACCTGGTCAACCAGGCGGCCCTGAAGGCAGCCATGGACGAGAAAGAGATGGTCACAATGAAGGATCTGGAGTTCGCTAAGGACAAGATCCTCAtggGCCCTGAGAGGAAGAGTGTTGATATCGACAAGAAGAATAAGACCATCACAGCCTACCATGAGTCCGGCCATGCTATTGTTGCCTATTACACCAAAGATGCAATGCCCATCAATAAGGCCACCATCATGCCTAGAGGTCCAACTCTTGGCCACGTGTCCATGCTCCCAGAGAATGACCGTTGGAGTGAGACCAGAGCCCAGCTGCTGGCTCAGATGGATGTCAGTATGGGCGGCCGAGTAGCAGAGGAGCTCATCTTTGGAGATGATAACATCACCACTGGAGCCTCCAGTGACTTCGATGGAGCAACCAAAATAGCAAAAATGATGGTGACCAGGTTCGGCATGAGTGACAAGCTTGGTGTCATGACCTACGGCGACGTGACCAAGCAGAGCCCCGAGACACAGGCTGCCATCGAGCAGGAAGTCAGGGTTCTACTGAAGGACTCATACGAACGTGCTAAAAACATCCTGAAGACGTACAACAAGGAGCACAAGAAGCTAGCTGATGCCCTGCTCGCATATGAAACTCTGAATGCCAAGGAGATCCAGATGGTGCTGGAGGGCAAATCATTGGACCAGCAGATACCTCAGTAGATATTTTTGACTCTTGTATCATGTATATATATGAAGCTGTGCACAGGGCTTTTGGAGGCCTTGTATTTCATTTGTTAGTAACCATCTTATTATCGATGTGAAGATTAAAGGATTAAGTTTCACCCCTTATAaaccttttattattattttaatttgtcttGCATTTCCTGTAGCAaagacttttggtttcacagtGATTTTAAAAGCACCCAGTTTAATtggataaaaaaatacatatttggtCTCCAGAAGTCTGCTACAGTCAAAGATGTTTGAGGTGTCATGAGGGGCTTCCTGTGCTCTACTCTCAAGACAAATGACATCTATAGAActttttgattcatcagtcatATTTGGTATCATAACAAGgttatactgtaaatgtattaaGGTGAGATGAATGATTTCCCATATGTCTATGtctcattttaaatgtgtacagaCCGGTGAACACCATAGAACCTTAAAATACCTCAATCTAGAATGTACCATCTGGCTGTAGCAAAGTACAGGTGataccactgctcattttagaGTTTTTTTCTCTAAATTATATATTTCAGTTGCatctattttgtttatttatttaagtgcCCAAAGGTGTGTTCTTTTTCTGAAATTAGTGATCCTCACGCCCTATTCTAAGCCCACGTGTAGCTGATAAATGAGGggaaatgtatgtatatacacacacacacacacacacacacactataaacgTGTAAAAGGATTGGCTTTGTGCTTCAGTTTGTTCTTTGAGACAAAGACCTTGGAGCTCAAATAAAGGTTATCCTTGCTCATGAA

Function

symbol description
yme1l1 Enables ATP-dependent peptidase activity. Involved in several processes, including cellular protein catabolic process; mitochondrial protein processing; and protein hexamerization. Located in mitochondrial inner membrane and nuclear body. Implicated in optic atrophy 11.

NR:

description
PREDICTED: ATP-dependent zinc metalloprotease YME1L1 isoform X1

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K08955 YME1; ATP-dependent metalloprotease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039790017.1 True 3186 mRNA 0.47 18 21303789 21312913
XM_039790018.1 False 3162 mRNA 0.47 18 21303789 21312913

Neighbor

gene id symbol gene type direction distance location
pks1 NA coding downstream 3295 21292784 ~ 21300494 (-)
zgc:111976 NA coding downstream 430837 20864843 ~ 20872952 (-)
LOC120552480 LOC103356684 coding downstream 544995 20747747 ~ 20758794 (-)
LOC120551976 LOC100696589,LOC106947338,LOC106912688,LOC104946573,LOC103147557,LOC103456804 coding downstream 562396 20735026 ~ 20741393 (-)
LOC120552510 cdh7 coding downstream 571538 20572208 ~ 20732251 (-)
acbd5a NA coding upstream 8387 21321300 ~ 21329803 (-)
pdss1 pdss1 coding upstream 73727 21386640 ~ 21393616 (-)
LOC120552736 apbb1ip coding upstream 100219 21413132 ~ 21442576 (-)
gad2 gad2 coding upstream 151186 21464099 ~ 21484174 (-)
myo3a myo3a coding upstream 172309 21485222 ~ 21545450 (-)
G221567 NA non-coding downstream 1742 21301484 ~ 21302047 (-)
G221551 NA non-coding downstream 33380 21269442 ~ 21270409 (-)
G221550 NA non-coding downstream 34686 21268900 ~ 21269103 (-)
G221544 NA non-coding downstream 39732 21258849 ~ 21264057 (-)
G221537 LOC104942383 non-coding downstream 72168 21190892 ~ 21231621 (-)
G221582 NA non-coding upstream 6977 21319890 ~ 21320410 (-)
G221604 abi1 non-coding upstream 32785 21345698 ~ 21372691 (-)
G221616 NA non-coding upstream 103038 21415951 ~ 21418007 (-)
G221695 NA non-coding upstream 418374 21731287 ~ 21731487 (-)
G221708 arhgap21 non-coding upstream 501583 21814496 ~ 21815723 (-)
rbis LOC101064519,LOC103367294,LOC102312013 other downstream 82122 21217680 ~ 21221667 (-)
LOC120552536 fbxl7 other downstream 441101 20835178 ~ 20862688 (-)
G221048 ankh other downstream 1976895 19315591 ~ 19326894 (-)
mettl4 mettl4 other downstream 2354294 18938913 ~ 18949495 (-)
LOC120552352 colec12,LOC102798044 other downstream 2492845 18772977 ~ 18810944 (-)
tfr1b NA other upstream 677104 21990017 ~ 22011086 (-)
LOC120552473 NA other upstream 801469 22114382 ~ 22120611 (-)
smpx smpx other upstream 889854 22202767 ~ 22218381 (-)
LOC120552322 cdh12,LOC108234660,LOC100695194,LOC101477368 other upstream 2088630 23401543 ~ 23519526 (-)
avl9 avl9 other upstream 3483676 24796589 ~ 24854888 (-)

Expression


Co-expression Network