rbbp8


Basic Information

Item Value
gene id rbbp8
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 9797181 ~ 9805437 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039790057.1
tgcagaagaagaagaagaagaagacttccCAGCATGCAATTCGGCGCGCgaatttgatttttgttttggagttagctagctagctacgtgtACTGCAACAACATGTTTGCCTAATAATATAATCCCCTTTAAACCTCTAACGTTACGTGTTTGTTGGACTCATTAGCGTAACCTTGGTGTTGGCAGGTTGTAGGGTAGTAGGGCTGGCTGTGTTTTTAGCAGTGAATGGAGGATGAGCAGCCCAGGACCGAGCAGCAGAACACCCAACCCAGCTGACCTTTTTGAAGATCTATGGAGGCAGCTCAGAGAGTGCCACCAGAATGCACTTCAAGaACTGGAAGCAAAAGTGAGCAAGTTGAAAAAAGAGCGCTGTTTAGATGCTCAGAGACTTGAGGTGTTTTACAGTCGCACCCAGCAGCTAAAGGAGCAAAACAAAACCCTGCAGGATGCCATCAGTCTCTTGGAGGAAAGACTACGTGCAGGAGAGTGTGATCGCTGTGCCATCTTAGAGGAGAGCCTAAAAAATAACCATGATCAGAATTTGTGCCTCATCGCCAAACTGAAGAATGAAAGAAACAGAATTGAGGATGAAAACCTAAAACTACATGCTGAACTGCAGAAATTGAAGATGTCTCGCTCAGAGTCCCAGCAGGCCTCTTCCCCGGAACAAGAAGAAGGCATCATCCCAGACTCACCGATTCTGCCAAGCTCGCTGCCTGTGGCAAACAAACTGAAGAAACAAAAGAATATCGACAAAATGAAACGCGTTCGCTATGCAGAGATACCTCTACCACAGTTTAACAACTCACTCTTCAGAGttctggATAAGGAGCCTGTTGATGCTACAAAGAATTCTGACCGAGCACAAGTGCTTGTACCCAACACATGTGAATTGGACACATCCCAAATCTCAAATGTGAAACTAAATCTGGAAGAAGCGATAGCAGAAACCTGTGGCCTTGAACTTACTGACAAGCCTTGCATGAAAACCGAGACACCTGCAGGCCAGCAAAGCGGCTCCAAATCTTCCTGGAAGTATGGCGTTCGTTTAAAACCTTACCGCTCCTCCCCTTCATCCACGCTGCTCCCCAGCCCAGACTCGACCACAGAAAGGTCCCCATCACTTCTCCCAGGTGTCAAAAGGTTTGCGGAGGACGGCTCCATTAACAAAGCAAAACGGAAGAAGGAGGAAAGTGAGCCGGTGCAGGAGGAGGACAGACAAGGAATCCAGGAAGGGGTGGACAAACAGAAGGAAGGCAAACGCGTACAACCTGAACTGATCAACCGAACGTCCACGCCTTTAAGCAATCAAAGCTTCAAAAAGGAGCTGTTGGACAGCAAGaCTCGGTCAGGACAAAATGGGACTTCCAACCAAAAGCCAAATGTGTCCTGTGTAAGTCCCGCTTTTAAGAAGCCAAATGTTAAAGGGGAAGCAAACAAGGCCGGTGTTGGGAAGAAAGGAAACCCGCGGCAGGATCTGAATGCCTCGCATGAACAACATAAAGGGGAAAATGCTGAAAGGAAGCACAAAGTGGAGCCCATGTGGAGCATTGACCCTGCGCTCGCCCTGTCCATGTATGACAGTGAGTGGCGAGGAGACGAGAAAAAGGAGGAGGACGAAGATGAATTTCCTGGAGAATTGGTAGATACCGACCGCACTTGGGTCAGTCACAGCTTACTCCAGTGTCGGGGAGAAAATGTCCGGGACAGAAGGGAGAGTGTGTCTGGACTAGGCGAGAAGACAACTGACAGTTTGGATATGATGTTTGACACAACAGCTAACGGGGAGTACAGGTCTTACAATTCACACTTGGGCCAGAGCCAGCCTTGTGGtgatgaggaggatgaggatgaagatgaagaagagggCGATGATCAACAAGATCCTCATGAAAACACTATGAGCCAAATGAAGAGGCGCAAAGCACAACATCCGACATTTGCACACGTGACTGTGGTTCGCAAGAAAGACGAGAGAAGAAAACTGAAGGGCACTACCTGCAAGGAATGTGACGTGTATTACGCCCATCTACCAGAGGAGGAAAAGCAGAAAAAGCTGTCTGCCTGCTCGAGGCACCGCTTTTTGTATATTCCTCCCTGTACTCCTGAAAACTTCTGGGAAGTAGGATTCCCATCAACTCAAACATGCATTGAAAGAGGTTATATCAAGGAAGAGAAAAATCCCCAGGCACGTACTCGGAGAAGACAACCATTCAATGCTTTATTCTCCCCGAAGCAAAGCCAGCAGGAGAGCTAAAAAAGAACTTGAATTGGTCCATTCACAGAAAAGAATTACAGTATATAAAGAGCAGGCCTGTCACACAATGAAGCTCTGTATTATACTGTGACCTTATTAGGAATGTTGACCCTTTGTCATCTTTTATTCAGTTTTAAGTGTATAATGTCAATGTGCTGACTGTATGTATAGACTGTTTGACTGGTCTGTGTTTTGTTAAGACTTTTCTAGATAGTGAGTATGTTTGGGCTGTGTTTGGGTAAATAAAAATGACTGTCTATGGAGTGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K20773 RBBP8, CTIP; DNA endonuclease RBBP8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039790057.1 True 2524 mRNA 0.46 19 9797181 9805437

Neighbor

gene id symbol gene type direction distance location
fam168b fam168b,LOC103356147 coding upstream 759 9790312 ~ 9796422 (+)
sh3glb1a sh3glb1,LOC104955778,LOC107097676,LOC105935324,LOC107382675 coding upstream 35046 9747902 ~ 9762135 (+)
LOC120552675 LOC103356150,LOC104955777,LOC102780560 coding upstream 51727 9737279 ~ 9745454 (+)
ntng1a ntng1,LOC102781425 coding upstream 206004 9476783 ~ 9591177 (+)
prmt6 prmt6 coding upstream 334138 9460305 ~ 9463043 (+)
nsmaf nsmaf coding downstream 9369 9814806 ~ 9833063 (+)
trnac-gca_34 NA coding downstream 427049 10232486 ~ 10232557 (+)
zmp:0000000991 NA coding downstream 595727 10401164 ~ 10415362 (+)
ngdn ngdn,LOC103482313 coding downstream 658909 10464346 ~ 10473620 (+)
thtpa thtpa coding downstream 702696 10508133 ~ 10512302 (+)
G218710 NA non-coding upstream 49475 9747345 ~ 9747706 (+)
G218709 NA non-coding upstream 49908 9747029 ~ 9747273 (+)
G218690 NA non-coding upstream 131503 9614840 ~ 9665678 (+)
G218693 NA non-coding upstream 460642 9336332 ~ 9336539 (+)
LOC120551942 NA non-coding upstream 504528 9260442 ~ 9292653 (+)
G218724 NA non-coding downstream 6782 9812219 ~ 9813878 (+)
G218727 NA non-coding downstream 36882 9842319 ~ 9842709 (+)
G218728 NA non-coding downstream 39517 9844954 ~ 9848196 (+)
G218796 NA non-coding downstream 158997 9964434 ~ 9964804 (+)
G218831 NA non-coding downstream 523818 10329255 ~ 10329525 (+)
G218695 NA other upstream 338481 9458183 ~ 9458700 (+)
G218694 LOC106675555,LOC106675866,LOC106674541,LOC106099046 other upstream 419034 9376944 ~ 9378147 (+)
rnpc3 NA other upstream 567018 9211918 ~ 9230163 (+)
G218441 LOC101478037,LOC102216221,LOC100695799 other upstream 1190603 8550783 ~ 8606578 (+)
G218848 LOC103365363 other downstream 617149 10422586 ~ 10423249 (+)
G218875 pabpn1 other downstream 682830 10488267 ~ 10494988 (+)
dcaf11 dcaf11 other downstream 711013 10516450 ~ 10526204 (+)
ipo4 ipo4,LOC102785023 other downstream 897701 10703138 ~ 10719314 (+)
zgc:101569 LOC102309791,LOC106455900,LOC102784166,LOC100695384,LOC101475816,LOC106931939 other downstream 963938 10769375 ~ 10815975 (+)

Expression


Co-expression Network