klhl40b (klhl40)


Basic Information

Item Value
gene id klhl40b
gene name klhl40
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 16514192 ~ 16517938 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039790160.1
AGCACCCGGACTATAAATAACCTACCAGTTGGAGCTCAGTTGAAGGGTCAGGACAGCTGAGGGAGAGGGCCGTCCCGGGGTTCAGCTGGTGTGGGCTAATAGCAGACGGACTGTGCCTCTGAATCCTCTTTCCAGGCTAGAAACTAAAACTCTGCTATAAAGAAGATCCCCTTTTGTTTGATTTGAAGCCCCTGAAAGGCTCTTTAAATTTGCCCTGCCAGGAACAATGGCTCTGCCGATAAACCCCATGGACGAACCCAGGCTGTACCAGCAGACGTTGCTCCAGGACGGCCTGTTCGACATGCTGGAGAACGAGAAGCTGGTTGACTGCGTGCTGAAGATCAAAGACAAGGAGTTCCCCTGCCACCGCCTGGTCCTGTGCGCCTGCAGCTCGTACTTCCGCTCCATCTTTCTGTCTGACCTGGAGGAGAGCAAAAAGAAAGAGATCATCTTGGAGGATGTGGAGCCGGGTGTCATGGGGCTGGTCCTCAAGTACCTATACACCTCCAAAATCAATGTGACAGAGCAGAACGTCCAGGACATCTTCGCAGTGGCTAATGTGTACCAGATCCCTTCAATTttcactgtttgtgtgtctttcctACAAAAGCGCCTGAGCCTCAGCAACTGTCTGGCTATCTTCAGGCTCGGCCTGATGCTGGACTGTCCCAGGTTGGCCGTCTCTGCCAGAAACTATGCCTGCGAGCGTTTCCAGCTCATCTCCAGAGATGAGGAGTTCCTCCAGCTGCTCCCCAGCGAGCTGGCAGCCATTTTAGCGAACGACAATCTGAACGTAGAGAAAGAGGAGGCGGTGTTTGAGGCTTTGATGAACTGGATGTCCCGGGACACtgagagcagagagaaagatCTGCCAGGTTTGCTGGATTGTGTTCGTTTGCGTCTGGTCGACGAGGATTATCTGAAGGAAAAAGTGGAGAAACACAAACTGATCTCCTGTAATCCTGAGCTGCAGCAGAAACTCCAGCTGGTTCGGGATGCTCTTGCTGGGAAAATGCCGgaggttaaaaaaagcaaaagcaagAAGGAGAATGGTGGAGCAGAGAAAGATGGAAAGAATGAGGATACAGCagaagacgaagaagaagaagaagaagaaaatcttCTCCCAGGCATCCTGAATGACACCCTGCGATTTGGCATGTTTGTCAGGAACTTGATACTAATGGTGAATGAGGCAGGCGCTGTGGCCTACGACCCGACAGGGAACGAGTGCTTTGTTGCATCACTTTCCACACAGGTCCCCAAGAACCACATAAGCCTGGTCACCAAGGAGAACCAGATCTTTGTGGCAGGAGGATTATTTTTTGATGAACAGAACAAAGAAGATCCACTGTGTTCTTATTTCCTACAGTATGACCCGGTCAGTGCTGATTGGCTGGGGATGCCTCCCCTCCCGTCTCCCCGCTTCCTGTTTGGGCTGGCCGAGGCTGAGAACTTCATCTTTGTTTTGGGAGGGAGGGAACTGAAGGAGCAGGAGCATACACTGGACTCAGTTTTGGTCTATGACCGACAATCTTTTAAATGGGGTGAATCAGAGTCACTTCCTTACCCGGTCTATGGACATGCAACTGTAACCCACAATGATGTTGTTTATGTGATCGGAGGAAAGGGAGACACCAAGAGCTGTTTAAAGAAGATGTGTGCATATGACGCCAGGAGATTTGAATGGAAGGAGCTCGCACCCATGAAGGTTGCACGTTCTTTATTCGGAGCCATCGTTCATAAGGACAAAATATATGTGGCGGCAGGAGTCACCGACACTGGGCTGACAGACACTGTGGAGGTGTACGACATCGCTACCAACAAgtGGTCAGACTTCGTAGCATTTCCCCAGGAGCGTAGCTCTCTGAACCTGGTGTCTGTGGCTGGCTTGCTGTACGCTGTAGGAGGTTTTGCCATGATGCCTTTGGAGGACAGCGACGAGATCGTTCCCAAAGAGATGAACGACATCTGGAGGTttgatgagacagagaggaagtggAATGGGATACTCAAAGAAATCCAGTATGCTTCAGGGGCCACTATTCTGGGGGTCCGCCTCAACACCCTGCGTCTCACCAAGATGTAAACCCCCTTCCAGTCCCTGCTTGTTAACAAAAATGTGTGCACAGTGACATCTAACATTAGTAGCGTTGTTAATTATCAGCTTACTGTGGTgttcagtttgttttattttacactATGATAGCAGCTCTAACTATGTAGCTATACTTTTGGCTTAATATCATACACAATTCTCCTTTTTGATTGAAGACATTTTTATATACGTGCATTTCAGTGATTTAAATCTGATTGAGATTGTAAAACTGTAAACAATCTGTAGCCTGTTGACATTTTTTGCACTGTAATGGaataaaatgcaaatatttAGCA

Function

symbol description
klhl40 Predicted to be involved in myotube differentiation and regulation of cellular protein metabolic process. Predicted to be located in cytoplasm. Predicted to be part of Cul3-RING ubiquitin ligase complex. Predicted to be active in A band and I band. Implicated in nemaline myopathy 8.

NR:

description
LOW QUALITY PROTEIN: kelch-like protein 40b

GO: NA

KEGG:

id description
K10473 KBTBD5_10; kelch repeat and BTB domain-containing protein 5/10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039790160.1 True 2394 mRNA 0.48 6 16514192 16517938

Neighbor

gene id symbol gene type direction distance location
sec22c sec22c coding downstream 50176 16458333 ~ 16464016 (-)
kpna1 kpna1 coding downstream 168120 16339112 ~ 16346072 (-)
mix23 ccdc58 coding downstream 180365 16328173 ~ 16333827 (-)
si:ch211-161h7.8 LOC104965030,LOC103368931 coding downstream 225864 16286497 ~ 16288328 (-)
ccdc191 ccdc191 coding downstream 285442 16217158 ~ 16228750 (-)
hhatlb hhatl coding upstream 1104 16519042 ~ 16527050 (-)
LOC120551893 LOC103377216,LOC107591252,LOC101472906,LOC100709944 coding upstream 9726 16527664 ~ 16534798 (-)
plcd1a NA coding upstream 83691 16601629 ~ 16621681 (-)
LOC120552381 LOC104957866 coding upstream 361557 16879495 ~ 16881724 (-)
bdh1 bdh1,LOC103373205,LOC107382809 coding upstream 432717 16950655 ~ 16965739 (-)
G220273 NA non-coding downstream 33034 16479383 ~ 16481158 (-)
G220272 nktr,LOC102798446 non-coding downstream 36677 16472248 ~ 16477515 (-)
G220257 NA non-coding downstream 63971 16447930 ~ 16450221 (-)
G220254 NA non-coding downstream 147579 16365204 ~ 16366613 (-)
G220243 NA non-coding downstream 175155 16337818 ~ 16339037 (-)
G220300 gars,LOC103369121 non-coding upstream 28990 16546928 ~ 16548724 (-)
G220373 NA non-coding upstream 176649 16694587 ~ 16701557 (-)
G220382 NA non-coding upstream 224349 16742287 ~ 16745412 (-)
G220443 NA non-coding upstream 369318 16887256 ~ 16888024 (-)
G220445 NA non-coding upstream 380251 16898189 ~ 16898537 (-)
drd3 drd3 other downstream 229457 16266303 ~ 16284735 (-)
G220124 NA other downstream 448971 16064670 ~ 16065221 (-)
G220117 usp12,LOC107701680,LOC107705210 other downstream 509428 16003879 ~ 16004764 (-)
si:ch211-140b10.6 polr1d other downstream 540529 15968731 ~ 15973663 (-)
mtfr1 NA other downstream 833304 15676254 ~ 15680888 (-)
LOC120552205 LOC100711537,LOC102295084,LOC108230444,LOC106948898,LOC103140410 other upstream 264134 16782072 ~ 16795124 (-)
G220412 csrnp1,LOC104937158,LOC102793366 other upstream 356711 16874649 ~ 16875300 (-)
si:ch73-174h16.4 LOC103364270,LOC104947970 other upstream 1908824 18426762 ~ 18483776 (-)
G220833 NA other upstream 2092298 18610236 ~ 18697970 (-)
LOC120552352 colec12,LOC102798044 other upstream 2255039 18772977 ~ 18810944 (-)

Expression


Co-expression Network