LOC120552272 (thnsl1)


Basic Information

Item Value
gene id LOC120552272
gene name thnsl1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 21706905 ~ 21711616 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039790161.1
GACATTCATCAATTTTGTCCCTCCAGGCTGACCATAGTTGTTTGTGACATGTGGTGTTGCAGactttatatatgtcaatggttgcaGAATGGTGCGTTTCCTGTTAGGTTAAAACTAACTGTTTAGTTACCAGAGACACTACTAAAATAACCATTAACGTTATCGAGTTTGAAGTACGGAAAGGCACCACTTCACGTGAGTGTCTTGCTCATTAAACCATAGCTTATAAATGCCACTGTCGTGAGCTACTCTCCTGGCTGCAAAACGCGTGAAAAGTTAAAGCAGCCACTTGCAGCTGCAGCTCCGTGTCAAAAAAGACAAGGAGAAAAGGCTGCTGTCATTTGCTGTCCCCTCAATGGGTTTACTGAATGCATTAAGAACTGTCAGATGCTACCTGAGCCCCTTTCCAACATCCAAATCATGGTTCTCCACCAAAGCCTCCCTGCTGGGGGACAAGAACATCTTGCTCATGGGTCCTCCTGGAGCAGGGAAGACCACAGTGGGGAGGATAGTGGCCCACAGACTAGGGCTACCTGTCATTGACGTTGATGACGATGTCTTGGAGACGACGTGGAAGATGCCCGTGGCTGCCAAGCTGGCAGCAGTTGGCGGAGAGCGTTTCCTGGAGGAAGAAGGCCAGGCTTTGTGTAACTTCTCCGCCTCAGGGTGTGTTGTTTCCCTGACAGGCTCTAACCCTCTTCACGCTGCAGCGATGCAACACGTCAAAGAGTCCGGACTGGTCATCTACTTGGATGTGGACGGTGAAGACATCATACGAAGACTCGCCAGGATGAAGGTGAACAGGATCGTGGGCCAGGAGGCAGAGGCATCCATGAGCGACATTCTGCGTTACAGGAAACCGTTTTATGAGAAATGGCTTGACGTGCGGGTGCTGTGTGGAAGAGGGGACACGGTGGAGGAAGTCGCGGAGAAGGTGCTGAAAGCTGTGGAGAGATATCAGAACCACGCTGCAGAAACCTATGTGTCAACCAGGAGTGACAGTGTGGCATCGTCCAAACAGAAAACCTACTTTAGTGATGTTGTGGTTGAGGGCCTGGCCACAAATGGAGGCCTCTACGTTCCCAGGAATGGCTTCCCAAACATTGGTGCTCGTGAATGGTTGAGACTAGCCGACATGTCGTACCCAGAACGAGCATTAGCTTTACTTGAAAAGTGCATACACCCATTGGATATCTCTGCTTTGGATCTCAGAACAATGGTATTCAAGGCATACGGGTCTAACTTTTCTAGTGAGGCAGTAGCACCTGTAAAACATCTCATCCGCAATCAGTATGTTCAGGAGCTCTTCCACGGCCCCACCGCCTCATTTAAAGACCTCGCCTTGCAGCTGATGCCCCAGCTCTTCGCCTACTGCCTCCCACAGATGTGCAACTACCTCGTTCTCGTAGCTACCTCTGGGGACACGGGAAGTGCAGTGCTCAGTGGGTTCAGCAGCCTCCGTGGCACCGACGTACACAGGACCGGGGTGCTGGTGTTTTTCCCGGAGGAAGGCGTGAGTGAGATTCAGAAGCTTCAGATGACGAGCTACAGGGAGGGCAACGCCAGGGCGATCGGCGTCCTGTCAGACTTTGACTTCTGTCAGAGAACCATAAAGAGGATGTTTGGGGAGTGCGGGCTGACCGGGCACCTCGCTGTAGAGTACAGCACAGTCCTCAGCACCGCCAACTCCATCAACTGGGCGCGGCTGTTGCCACAGGTGGTTTACCATTCTTCAGCTTATCTGGATCTAATCAGAGACGGTGTTATCAAGTTCGGTGAGCCCATTGATGTTTGCATCCCTTCTGGTAACTTTGGCAATGCCATGTCAGCAGTGTACGCCAAGCAAATGGGCATCCCAATAAGAAAAGTAATCTGCGCGTCCAACCACAACCGCATCATCACGGACTTTATCACCACAGGCGAGTATGATCTCCGGGGACGGCCTCTGATGCTCTCCCACTCCCCGGCTATAGATATCCTGAAATCCTCCAACCTTGAGAGGTTTATCTACCACGTCTCAAACGGAGACGGCCGTCTTGTCAAGGAGCTGTTCACACGCTTAGACAGACAGCAGCACTTTCAGGTTCCTGAGCCTCTTCTTGGCAGGATGCGGCAGGACGTGACGGCCGGCTGGTGCTCGGAAGACGACTGCTTGGCCGCCATCCAGAGCGTTCACACACAGGCGGGCTACctcatggacacacacaccgctgTTGCTAAAGTGGTGGCTGATAGGCTGCAGGACGGTTCGTGCCCCGTGGTGCTTTGTTCCACCGCTCACTACGGGAAATTTGCTCCCGCTGTGTTCAAAGCCTTACAAATCCCAAATGTTCCTGAGGATCCCCTTGAGCAGCTGAAGAAGCTCGGATCGACTGCATCCAGACCTGAAATACACAGAGACATGATGAAATGCCTGGAGACAAGGGGCAGGAGGGAACACACCGTTTGTCAGGCTGAGTACAGTGTGTTGGTAGAAGAGGTGGAGAGCATGATACACGACTCCTTCTTGAAAGTTATGTAGGATTATTTTAGCGTTTGTTAATGTCCACCTCAACTTAACGTTTTCAACTTTTAAGTTTAAATCGGAATTCATCATTTACCAAAAAGTCTATTTTTCATATGTCCTGTTTGTATCATGTGCTCTTCATTCTTTCAATGTATTTGTAACGTTTTAAAGCACGtttaacaaataaaaggaaaaaaggtaAAATCTTGCTAAAGAAAGAAatttaaacagaaaataaatcaataacataaaattcaataaaatgttaGGCATGGTCATGAAATTGATTTTAAAGACATCATTTAAAAGGCCAAATCCTGCCTGAGCATGCAGGCTTGAGTAAATGAACATGTAAACTCTGATTATACTATAATAGAGGCAGAAACTCAATGTAAATCCTGTTGAGGCTATTGCTTATCTAACACTTCTTTACATCATTATCCAGAGCCCTGGGGATGTCTACCTCTTGGCCACTGCTGGAATCACTGGTGCAAGCATTGCACTAACAGTATGGTATCACTGTAGGGGGAATTAATGACTATGGCTAAGTCCAGGAGGTCAAATAAACAGTtacttagttagttagttagttagttagttagttagttagttagttagttagttatgttttatttctgtcatgccaaacattt
>XM_039790162.1
GACATTCATCAATTTTGTCCCTCCAGGCTGACCATAGTTGTTTGTGACATGTGGTGTTGCAGactttatatatgtcaatggttgcaGAATGGTGCGTTTCCTGTTAGGTTAAAACTAACTGTTTAGTTACCAGAGACACTACTAAAATAACCATTAACGTTATCGAGTTTGAAGTACGGAAAGGCACCACTTCACGAGAAAAGGCTGCTGTCATTTGCTGTCCCCTCAATGGGTTTACTGAATGCATTAAGAACTGTCAGATGCTACCTGAGCCCCTTTCCAACATCCAAATCATGGTTCTCCACCAAAGCCTCCCTGCTGGGGGACAAGAACATCTTGCTCATGGGTCCTCCTGGAGCAGGGAAGACCACAGTGGGGAGGATAGTGGCCCACAGACTAGGGCTACCTGTCATTGACGTTGATGACGATGTCTTGGAGACGACGTGGAAGATGCCCGTGGCTGCCAAGCTGGCAGCAGTTGGCGGAGAGCGTTTCCTGGAGGAAGAAGGCCAGGCTTTGTGTAACTTCTCCGCCTCAGGGTGTGTTGTTTCCCTGACAGGCTCTAACCCTCTTCACGCTGCAGCGATGCAACACGTCAAAGAGTCCGGACTGGTCATCTACTTGGATGTGGACGGTGAAGACATCATACGAAGACTCGCCAGGATGAAGGTGAACAGGATCGTGGGCCAGGAGGCAGAGGCATCCATGAGCGACATTCTGCGTTACAGGAAACCGTTTTATGAGAAATGGCTTGACGTGCGGGTGCTGTGTGGAAGAGGGGACACGGTGGAGGAAGTCGCGGAGAAGGTGCTGAAAGCTGTGGAGAGATATCAGAACCACGCTGCAGAAACCTATGTGTCAACCAGGAGTGACAGTGTGGCATCGTCCAAACAGAAAACCTACTTTAGTGATGTTGTGGTTGAGGGCCTGGCCACAAATGGAGGCCTCTACGTTCCCAGGAATGGCTTCCCAAACATTGGTGCTCGTGAATGGTTGAGACTAGCCGACATGTCGTACCCAGAACGAGCATTAGCTTTACTTGAAAAGTGCATACACCCATTGGATATCTCTGCTTTGGATCTCAGAACAATGGTATTCAAGGCATACGGGTCTAACTTTTCTAGTGAGGCAGTAGCACCTGTAAAACATCTCATCCGCAATCAGTATGTTCAGGAGCTCTTCCACGGCCCCACCGCCTCATTTAAAGACCTCGCCTTGCAGCTGATGCCCCAGCTCTTCGCCTACTGCCTCCCACAGATGTGCAACTACCTCGTTCTCGTAGCTACCTCTGGGGACACGGGAAGTGCAGTGCTCAGTGGGTTCAGCAGCCTCCGTGGCACCGACGTACACAGGACCGGGGTGCTGGTGTTTTTCCCGGAGGAAGGCGTGAGTGAGATTCAGAAGCTTCAGATGACGAGCTACAGGGAGGGCAACGCCAGGGCGATCGGCGTCCTGTCAGACTTTGACTTCTGTCAGAGAACCATAAAGAGGATGTTTGGGGAGTGCGGGCTGACCGGGCACCTCGCTGTAGAGTACAGCACAGTCCTCAGCACCGCCAACTCCATCAACTGGGCGCGGCTGTTGCCACAGGTGGTTTACCATTCTTCAGCTTATCTGGATCTAATCAGAGACGGTGTTATCAAGTTCGGTGAGCCCATTGATGTTTGCATCCCTTCTGGTAACTTTGGCAATGCCATGTCAGCAGTGTACGCCAAGCAAATGGGCATCCCAATAAGAAAAGTAATCTGCGCGTCCAACCACAACCGCATCATCACGGACTTTATCACCACAGGCGAGTATGATCTCCGGGGACGGCCTCTGATGCTCTCCCACTCCCCGGCTATAGATATCCTGAAATCCTCCAACCTTGAGAGGTTTATCTACCACGTCTCAAACGGAGACGGCCGTCTTGTCAAGGAGCTGTTCACACGCTTAGACAGACAGCAGCACTTTCAGGTTCCTGAGCCTCTTCTTGGCAGGATGCGGCAGGACGTGACGGCCGGCTGGTGCTCGGAAGACGACTGCTTGGCCGCCATCCAGAGCGTTCACACACAGGCGGGCTACctcatggacacacacaccgctgTTGCTAAAGTGGTGGCTGATAGGCTGCAGGACGGTTCGTGCCCCGTGGTGCTTTGTTCCACCGCTCACTACGGGAAATTTGCTCCCGCTGTGTTCAAAGCCTTACAAATCCCAAATGTTCCTGAGGATCCCCTTGAGCAGCTGAAGAAGCTCGGATCGACTGCATCCAGACCTGAAATACACAGAGACATGATGAAATGCCTGGAGACAAGGGGCAGGAGGGAACACACCGTTTGTCAGGCTGAGTACAGTGTGTTGGTAGAAGAGGTGGAGAGCATGATACACGACTCCTTCTTGAAAGTTATGTAGGATTATTTTAGCGTTTGTTAATGTCCACCTCAACTTAACGTTTTCAACTTTTAAGTTTAAATCGGAATTCATCATTTACCAAAAAGTCTATTTTTCATATGTCCTGTTTGTATCATGTGCTCTTCATTCTTTCAATGTATTTGTAACGTTTTAAAGCACGtttaacaaataaaaggaaaaaaggtaAAATCTTGCTAAAGAAAGAAatttaaacagaaaataaatcaataacataaaattcaataaaatgttaGGCATGGTCATGAAATTGATTTTAAAGACATCATTTAAAAGGCCAAATCCTGCCTGAGCATGCAGGCTTGAGTAAATGAACATGTAAACTCTGATTATACTATAATAGAGGCAGAAACTCAATGTAAATCCTGTTGAGGCTATTGCTTATCTAACACTTCTTTACATCATTATCCAGAGCCCTGGGGATGTCTACCTCTTGGCCACTGCTGGAATCACTGGTGCAAGCATTGCACTAACAGTATGGTATCACTGTAGGGGGAATTAATGACTATGGCTAAGTCCAGGAGGTCAAATAAACAGTtacttagttagttagttagttagttagttagttagttagttagttagttagttatgttttatttctgtcatgccaaacattt
>XM_039790163.1
agctaacgtcagctaacgcTAAAAAAGGACTGTGTGATTTGTTTGACAACACGCTGCCGGCTAGTTGCTAGGCAACTGGAGGAGCAAATGTTGCATTTCAGGACTTTAGTAAAGCAATATCCGAGCAGTCCTTATGTAAAGTTCACGGACTGTTTCTTGGTTTAGAGCACCCACTGTTCCATAACAACTCGTATTATGCAGTATATAACGTTAGCATTTCTATTTTCACATGAATGTGAGTCGTACTTTAGAATTCGGAACACTAAAGTACAACGTTCCGAGAATAATTTGAATGTAGCACTAAGGTCACTCGTGTTAGCCATACCGCGAGGCAAACAATTTGGGGGTGATGATGAAAAGATTCGCTCTTATACATCGTTAAATTTGTAAGCCTGTGGTTTGTATTGCATACGAAATCAAACTTGGAAAAcacgtgtgtttgtttttgcaacGGGATATCGGAGAAAAGGCTGCTGTCATTTGCTGTCCCCTCAATGGGTTTACTGAATGCATTAAGAACTGTCAGATGCTACCTGAGCCCCTTTCCAACATCCAAATCATGGTTCTCCACCAAAGCCTCCCTGCTGGGGGACAAGAACATCTTGCTCATGGGTCCTCCTGGAGCAGGGAAGACCACAGTGGGGAGGATAGTGGCCCACAGACTAGGGCTACCTGTCATTGACGTTGATGACGATGTCTTGGAGACGACGTGGAAGATGCCCGTGGCTGCCAAGCTGGCAGCAGTTGGCGGAGAGCGTTTCCTGGAGGAAGAAGGCCAGGCTTTGTGTAACTTCTCCGCCTCAGGGTGTGTTGTTTCCCTGACAGGCTCTAACCCTCTTCACGCTGCAGCGATGCAACACGTCAAAGAGTCCGGACTGGTCATCTACTTGGATGTGGACGGTGAAGACATCATACGAAGACTCGCCAGGATGAAGGTGAACAGGATCGTGGGCCAGGAGGCAGAGGCATCCATGAGCGACATTCTGCGTTACAGGAAACCGTTTTATGAGAAATGGCTTGACGTGCGGGTGCTGTGTGGAAGAGGGGACACGGTGGAGGAAGTCGCGGAGAAGGTGCTGAAAGCTGTGGAGAGATATCAGAACCACGCTGCAGAAACCTATGTGTCAACCAGGAGTGACAGTGTGGCATCGTCCAAACAGAAAACCTACTTTAGTGATGTTGTGGTTGAGGGCCTGGCCACAAATGGAGGCCTCTACGTTCCCAGGAATGGCTTCCCAAACATTGGTGCTCGTGAATGGTTGAGACTAGCCGACATGTCGTACCCAGAACGAGCATTAGCTTTACTTGAAAAGTGCATACACCCATTGGATATCTCTGCTTTGGATCTCAGAACAATGGTATTCAAGGCATACGGGTCTAACTTTTCTAGTGAGGCAGTAGCACCTGTAAAACATCTCATCCGCAATCAGTATGTTCAGGAGCTCTTCCACGGCCCCACCGCCTCATTTAAAGACCTCGCCTTGCAGCTGATGCCCCAGCTCTTCGCCTACTGCCTCCCACAGATGTGCAACTACCTCGTTCTCGTAGCTACCTCTGGGGACACGGGAAGTGCAGTGCTCAGTGGGTTCAGCAGCCTCCGTGGCACCGACGTACACAGGACCGGGGTGCTGGTGTTTTTCCCGGAGGAAGGCGTGAGTGAGATTCAGAAGCTTCAGATGACGAGCTACAGGGAGGGCAACGCCAGGGCGATCGGCGTCCTGTCAGACTTTGACTTCTGTCAGAGAACCATAAAGAGGATGTTTGGGGAGTGCGGGCTGACCGGGCACCTCGCTGTAGAGTACAGCACAGTCCTCAGCACCGCCAACTCCATCAACTGGGCGCGGCTGTTGCCACAGGTGGTTTACCATTCTTCAGCTTATCTGGATCTAATCAGAGACGGTGTTATCAAGTTCGGTGAGCCCATTGATGTTTGCATCCCTTCTGGTAACTTTGGCAATGCCATGTCAGCAGTGTACGCCAAGCAAATGGGCATCCCAATAAGAAAAGTAATCTGCGCGTCCAACCACAACCGCATCATCACGGACTTTATCACCACAGGCGAGTATGATCTCCGGGGACGGCCTCTGATGCTCTCCCACTCCCCGGCTATAGATATCCTGAAATCCTCCAACCTTGAGAGGTTTATCTACCACGTCTCAAACGGAGACGGCCGTCTTGTCAAGGAGCTGTTCACACGCTTAGACAGACAGCAGCACTTTCAGGTTCCTGAGCCTCTTCTTGGCAGGATGCGGCAGGACGTGACGGCCGGCTGGTGCTCGGAAGACGACTGCTTGGCCGCCATCCAGAGCGTTCACACACAGGCGGGCTACctcatggacacacacaccgctgTTGCTAAAGTGGTGGCTGATAGGCTGCAGGACGGTTCGTGCCCCGTGGTGCTTTGTTCCACCGCTCACTACGGGAAATTTGCTCCCGCTGTGTTCAAAGCCTTACAAATCCCAAATGTTCCTGAGGATCCCCTTGAGCAGCTGAAGAAGCTCGGATCGACTGCATCCAGACCTGAAATACACAGAGACATGATGAAATGCCTGGAGACAAGGGGCAGGAGGGAACACACCGTTTGTCAGGCTGAGTACAGTGTGTTGGTAGAAGAGGTGGAGAGCATGATACACGACTCCTTCTTGAAAGTTATGTAGGATTATTTTAGCGTTTGTTAATGTCCACCTCAACTTAACGTTTTCAACTTTTAAGTTTAAATCGGAATTCATCATTTACCAAAAAGTCTATTTTTCATATGTCCTGTTTGTATCATGTGCTCTTCATTCTTTCAATGTATTTGTAACGTTTTAAAGCACGtttaacaaataaaaggaaaaaaggtaAAATCTTGCTAAAGAAAGAAatttaaacagaaaataaatcaataacataaaattcaataaaatgttaGGCATGGTCATGAAATTGATTTTAAAGACATCATTTAAAAGGCCAAATCCTGCCTGAGCATGCAGGCTTGAGTAAATGAACATGTAAACTCTGATTATACTATAATAGAGGCAGAAACTCAATGTAAATCCTGTTGAGGCTATTGCTTATCTAACACTTCTTTACATCATTATCCAGAGCCCTGGGGATGTCTACCTCTTGGCCACTGCTGGAATCACTGGTGCAAGCATTGCACTAACAGTATGGTATCACTGTAGGGGGAATTAATGACTATGGCTAAGTCCAGGAGGTCAAATAAACAGTtacttagttagttagttagttagttagttagttagttagttagttagttagttatgttttatttctgtcatgccaaacattt

Function

symbol description
thnsl1 Orthologous to human THNSL1 (threonine synthase like 1).

NR:

description
PREDICTED: threonine synthase-like 1

GO:

id name namespace
GO:0006520 cellular amino acid metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039790161.1 False 3159 mRNA 0.48 3 21706905 21711145
XM_039790162.1 False 3032 mRNA 0.48 3 21706905 21711145
XM_039790163.1 True 3298 mRNA 0.48 3 21706905 21711616

Neighbor

gene id symbol gene type direction distance location
ptchd3a NA coding downstream 6862 21693431 ~ 21700043 (-)
gpr158a gpr158 coding downstream 16971 21604715 ~ 21689934 (-)
LOC120552336 NA coding downstream 108149 21590944 ~ 21598756 (-)
anxa13 LOC107081825,LOC103456771,LOC105935762,LOC106515547,LOC103140553,LOC103370912 coding downstream 119752 21575606 ~ 21587153 (-)
LOC120551882 LOC104933965,LOC103370911,LOC101468576,LOC102294681 coding downstream 132395 21564869 ~ 21574510 (-)
LOC120552274 NA coding upstream 4931 21716547 ~ 21719505 (-)
tmtopsb LOC100702425,LOC101487167,LOC102300731,LOC104945569,LOC102206266,LOC103366381 coding upstream 164548 21876164 ~ 21917655 (-)
tnk2a LOC103363574 coding upstream 242029 21953645 ~ 21991347 (-)
LOC120551932 klhl34 coding upstream 483620 22195236 ~ 22200046 (-)
LOC120552124 NA coding upstream 968075 22679691 ~ 22688402 (-)
G221616 NA non-coding downstream 288898 21415951 ~ 21418007 (-)
G221604 abi1 non-coding downstream 334214 21345698 ~ 21372691 (-)
G221582 NA non-coding downstream 386495 21319890 ~ 21320410 (-)
G221567 NA non-coding downstream 404858 21301484 ~ 21302047 (-)
G221551 NA non-coding downstream 436496 21269442 ~ 21270409 (-)
G221695 NA non-coding upstream 19671 21731287 ~ 21731487 (-)
G221708 arhgap21 non-coding upstream 102880 21814496 ~ 21815723 (-)
G221712 LOC104936438,LOC103366385 non-coding upstream 120540 21832156 ~ 21832884 (-)
G221768 NA non-coding upstream 232754 21944370 ~ 21944690 (-)
G221793 NA non-coding upstream 379925 22091541 ~ 22091753 (-)
rbis LOC101064519,LOC103367294,LOC102312013 other downstream 485238 21217680 ~ 21221667 (-)
LOC120552536 fbxl7 other downstream 844217 20835178 ~ 20862688 (-)
G221048 ankh other downstream 2380011 19315591 ~ 19326894 (-)
mettl4 mettl4 other downstream 2757410 18938913 ~ 18949495 (-)
LOC120552352 colec12,LOC102798044 other downstream 2895961 18772977 ~ 18810944 (-)
tfr1b NA other upstream 278401 21990017 ~ 22011086 (-)
LOC120552473 NA other upstream 402766 22114382 ~ 22120611 (-)
smpx smpx other upstream 491151 22202767 ~ 22218381 (-)
LOC120552322 cdh12,LOC108234660,LOC100695194,LOC101477368 other upstream 1689927 23401543 ~ 23519526 (-)
avl9 avl9 other upstream 3084973 24796589 ~ 24854888 (-)

Expression


Co-expression Network