LOC120552274


Basic Information

Item Value
gene id LOC120552274
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 21716547 ~ 21719505 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039790164.1
TCCTCAAGAGGCAGGCAGTGACGAAACccacgtgacacagatacaggaaatgAATTGCACCGTCTGGCTAAACCGTCTGTTCCTGCTCCGTTTTCGTTTTAAAACGAGATACCGGTGTAAACAGAACTTGacagtttgttaaaaaaaaactaattactaCGGAGGAATAACAGCTATGGCCAAAAGTAGGTCGAGAGATTTCCTTGTTTGGACCGAcgacgaggtggaactgttactgaaagtaACACAGGAGTATAAGGAGGACAGGGCGGCAGTAAACGTAGATTGGGAGTCATTGCAAACGAAATATGGCGACATTTTTGAGCGGTATCAGGAGAATTATCCATCTCCGGAGGAAGCCAAGGCAATGGGAAAGGAGTACCCACACAGCAAGAATGAAATCACAAAAGTTCAATTGGCTACCAAAATTAAGGCCATACGGATCCGATACAGGCAAGCAATTAATTCAGGTAGAAGAAATGGCCATGGGCGGGTAATCCTGCTCTTTTTTGAGCTCTGTCGGTCCATTTGGGGAGGAACTCTTGCTACTCATGCAATATCCCAGGATATCAAGACAGATGACGATATGGCGGTAGAGACCGTGAAATCGATCGGCAGCTCGCCTGATGCTGGGTTGTCGTCCATGCTGGGTGGGGATGGAGTTGCAGAGGATGCCATGTCTGCAGAGATTGTGGGAAGTCAACACCAGAGACTCGATGCTACCCCTAGTGGCTTCAGGAGAAAGAAACTCAAAAGAAAACTGTCCACGGATTCCATTGCAGAGGATGATCTGGACATTCAGAGGCGGCTTCTTCGACGATTAGAAGCAAACCACGAAGAGTTCATGCAGAAAATGGACCGGTGGTCATCTATGATGGACCGTATGAACTCCAATATTGAGCTGCTGGTGCAGCACATTGTGGGTTCAGGTGCCACTGACAAGACTCCACGTTACATATGGGATGCTAAAAATGGGGAAGTGTCTTTGGTGCATGAATGTAGGTGTGGTAACTAAATATTAttttgattaatctgttgagaatcttgtctataaaatgtcccaAACAAATTTTAAATGCTCATTACAAATTTCTAGAGCCTAATTTAGATGTGTTTTGTCCAcctaacagtccaaaacccaaagatattcaatccCTAAAGAAAATTAGGAAATCACTACACCTGAGAAGCTGGGAACAGTAAATATTTGGCTTTCCACTCAATAAATGacaattaatacattttcattacagcactatttatttgtaacatagaaagaaaacagttaaatttttttttttatgcctatGTCAGAATTGATAGGGGGGAGAAAAAGATGGGGAATAACTTGCAAGAAAGGACTTAAACAGTGGACGTTTCAGGTAATGATTAGCGTCTCAAATACTTGGGACACCGAGTGCCACTCAAATAAATGTTCCTGTAATCAGTTCCAGTTTATTGTAGGTCAGGTGCTTGATATCTGCTCTGCGATAACCTCACAGATAATAAACCCACTCATAAAATAA

Function

GO: NA

KEGG:

id description
ko04130 SNARE interactions in vesicular transport

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039790164.1 True 1526 mRNA 0.42 2 21716547 21719505

Neighbor

gene id symbol gene type direction distance location
LOC120552272 thnsl1 coding downstream 4931 21706905 ~ 21711616 (-)
ptchd3a NA coding downstream 16504 21693431 ~ 21700043 (-)
gpr158a gpr158 coding downstream 26613 21604715 ~ 21689934 (-)
LOC120552336 NA coding downstream 117791 21590944 ~ 21598756 (-)
anxa13 LOC107081825,LOC103456771,LOC105935762,LOC106515547,LOC103140553,LOC103370912 coding downstream 129394 21575606 ~ 21587153 (-)
tmtopsb LOC100702425,LOC101487167,LOC102300731,LOC104945569,LOC102206266,LOC103366381 coding upstream 156659 21876164 ~ 21917655 (-)
tnk2a LOC103363574 coding upstream 234140 21953645 ~ 21991347 (-)
LOC120551932 klhl34 coding upstream 475731 22195236 ~ 22200046 (-)
LOC120552124 NA coding upstream 960186 22679691 ~ 22688402 (-)
ggh ggh,LOC100704938,LOC108234706,LOC101480685 coding upstream 971525 22691030 ~ 22696864 (-)
G221616 NA non-coding downstream 298540 21415951 ~ 21418007 (-)
G221604 abi1 non-coding downstream 343856 21345698 ~ 21372691 (-)
G221582 NA non-coding downstream 396137 21319890 ~ 21320410 (-)
G221567 NA non-coding downstream 414500 21301484 ~ 21302047 (-)
G221551 NA non-coding downstream 446138 21269442 ~ 21270409 (-)
G221695 NA non-coding upstream 11782 21731287 ~ 21731487 (-)
G221708 arhgap21 non-coding upstream 94991 21814496 ~ 21815723 (-)
G221712 LOC104936438,LOC103366385 non-coding upstream 112651 21832156 ~ 21832884 (-)
G221768 NA non-coding upstream 224865 21944370 ~ 21944690 (-)
G221793 NA non-coding upstream 372036 22091541 ~ 22091753 (-)
rbis LOC101064519,LOC103367294,LOC102312013 other downstream 494880 21217680 ~ 21221667 (-)
LOC120552536 fbxl7 other downstream 853859 20835178 ~ 20862688 (-)
G221048 ankh other downstream 2389653 19315591 ~ 19326894 (-)
mettl4 mettl4 other downstream 2767052 18938913 ~ 18949495 (-)
LOC120552352 colec12,LOC102798044 other downstream 2905603 18772977 ~ 18810944 (-)
tfr1b NA other upstream 270512 21990017 ~ 22011086 (-)
LOC120552473 NA other upstream 394877 22114382 ~ 22120611 (-)
smpx smpx other upstream 483262 22202767 ~ 22218381 (-)
LOC120552322 cdh12,LOC108234660,LOC100695194,LOC101477368 other upstream 1682038 23401543 ~ 23519526 (-)
avl9 avl9 other upstream 3077084 24796589 ~ 24854888 (-)

Expression


Co-expression Network