LOC120552289


Basic Information

Item Value
gene id LOC120552289
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 24764661 ~ 24770211 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039790199.1
AGTGTCACCTGGAACCAAAATCTAGCCAATCAGTGCAGCATTTGACAAGCTTGCCTGTAGCATGAGTCCACACCTTTGATTTCCAATTTAAAACCTACCTTGAAAGCTGTGTTGGTTTCTCAGTTTGGTTAGCTTCTTTTTGTACTTGCCCAGTAAGTGTTTTTTGTCAGAAAATATACTGAAACAATCTATCTTGCAACAAATTTGCCAACAAAGAAGGAAACAGttcaaacatttatttgaacTTGAACTGTTTGTCAGATATGGCGGCAGCCACATCTACCTTCCAACATTCTTTCGGTCTGGGCCCTCGGGGTCCAAACCCACCATACGGAGCTCAGCAGGCTCCAGGGCCTTCAGGAGCTTCACGTCCTGAGGAGCAGCACCACAAACCTTTCTTCTATATACAGCCCTCGCAGCCATACATGCCCATGCAAAGTATGCAGTGGCCTGTGCCAGTACCCATGCCTGTATCCTACAACCCATACGCCTACCCTGGTTTAGGTTATGGCATGCCAATGATGCCCCACTATCAGCCAAATCCATACATGGAGCCACCTGGCTTTGTCGTACCCCATACCCACCTCCATTTAATGGACTACAGACGCATGCTCAACCCTCAGTATTACCAGACCATGGCCTACCAGTCCCGCAGGTTCCGCTACCAACACCACAGCCAGACCAGAGAAACTACCAGCTCTGAGGTTCAAACCGAGCCGCTGCCTGCAACCCAGAGGACGAGCACTCCAGGTTCCAGTGACTGCGAGGCCCCCAGTGGTGTCCCAGTTtgcagcagtgacgacagcccCAGTGCCCCCTTCAATCAGCCACTCCTGCCAGCTTTGGCTGTGCAGACGGGGGATCATTCTCTGGAACTAAAGGACATGGCACCCTCGTCCACCACCAGGACGGCTGCAAATGGCGGCTTTGTGATTCAGACAGAGGAAGTGAGGATTGAATGCTGCACCACACCAGTGGGACTGCAACTCCTGCACTCTCATGAGACTGCAGAAGTATCTCACAGCTTTTCCCAAGATGGTGTCCAGTGCAGTAGCTCCGTCCTCCAGGGTCACATGCTGCAGGACGAGGGATTGTGCCTTCCTGCAGACAAGTCAGAGCAGGCACTCCAATCTTGTCCTGACATTCTGTTAGTTGGGATGCCCAGCAGCGGTGAGAAGATCTCTGCTCTGGAGGAGTCCAGGAACCAGACGGATTCTGTGACTGTCACTTCCAACTTGGGTTCCCGACTAGCAGCTTATTGTGACGATGAGATGAGCTGTGAGAAAGATCTAAACACGACATCGAACTTTAAAGTCGTTCACTTGCCCTTTGACCCTGAGTACCTGGATGAGCTGTGGAAGATGGAGTCCACTGTCTGGTCAATGGAGGAAACCTTGATTCCCTCCCCTGAATCGCTGATCCTAAATGGCCGCACAGAGTATCATAATGAATCTCTGGCTGGTGTAGCTGGAGTGCCCTCAGCAGATGTgctgatggagagagaggaggttCCTACAGAAGAGTTTCTTCCCATGACTGAGATGCCTTCTCTGGCACAGGATGAACAGAAGGACATGGTCCCCACTGGGGAGAAGGGTCCTGGGGATGAGATTGTGTCTGAAGCTGTTGTCTGCCCTGTGACAGATGTTCCAGTTGCAGAGAAAACTCCAATGACCGAGTTGACCCACGAAGCAGAGGTGGCTCTTGCACCTAATTTGCCGGTGTTGGATAATTCCCCTCCAAAGGCAAATGGGAACCAACATAGACGAGAAACGGATGTCCAGCATCAACAGGACACTTCATTCGAATCATTGCCCACCTACCTCCCCTCAACCAGCTGGATGGCTGACTTTGATAATGTCCACTATTGTAATAAGATGCCCCCAACTCCCAAAAAGCAGAACAGACCTCTCAGCAGCTGTGGGTTAGATGTGCATACAAGGAGAAGAAAACTAGAACTAGAGTACAAAGAACAACATACCGTTCGCAAGCCAAAAGAGAGGTACAAACACAAAGGGAAGGTGGATCGGCGAAGCCTCTCTGACCACGAATGCTGCCTTAACAGAAATTTCAATGAGAATGCATTTACTTATGCGTCCAAGAGGGAGAGACTTTGCTCCAGATGTGTGGCGAAGAGCAGCGTTTGCACGTCTGCCAGTCCAGGACCCGATGGTCGCACCTTAAAAAGAAAAGCTGCTCTTGTCCAACAGTGGAATGACTCCCTCTTACCAACATGTGAAGCCTGTAAGTCTCACTCCAAGAAACGACTGATGAGGAAAGGTTCCGGCCCTGATGTCTGTGGGCCTCATCATGGACACGACACAGAGGGAGAATCTTCTGAGAACGGCTCATGTCACCTTGGCTCAAAATGGAGGGCAGTTGATAATCCCAGGAAGCTCAACAGTCTCAAGAGGCCACTGGCCTCGAAGcaaaacgttgaaaaatgtCCTGCAGCGATGTACCCAAAGCTGAGGGAAAAGAACTGTGTGTGTAATGAGCCGCAGCTTCAGTCTGTTGGATGGGAGAGGCTGCGGCACTGTCCCCACGGCAACGCCATCCGAGAGATGGATGAGAACTGCGCCATGCCGGTTTCCCTCCAGGACAAATGGAGGATAATGGATCAGATTTACCTGACACACAGGTGGCAAACTGGAGGGAAGTCGCGGAAAGCAGTGATGCCTAACCCGGACGGTGACGGCTTCAAGAATGAAGCCAGATCAACACATTTTAATCACAAGAAATCACAACCACAATCACAAGGAACTCGAAGAAATGACACAAGATGCTGATTTTGCACAAGAGCACAATTCTACAAAGTGAAAACTGCACTTTTTTAAGAAACTTTGATGTACACTTAATTTAACCTATTTCCACCTAAATGTAATGTGTAAATGTATTGTATAATAAATCACAATGTTCACTATttattaacattaaaataaacacCAATTTATGATa

Function

GO: NA

KEGG:

id description
ko04115 p53 signaling pathway
ko04914 Progesterone-mediated oocyte maturation

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039790199.1 True 2958 mRNA 0.49 4 24764661 24770211

Neighbor

gene id symbol gene type direction distance location
rnf152 rnf152 coding downstream 40821 24660111 ~ 24723840 (-)
mc4r LOC104930272,LOC103365861,LOC104961440 coding downstream 403445 24357609 ~ 24361216 (-)
drosha drosha coding downstream 466810 24193378 ~ 24297851 (-)
cdh10a LOC102783614,LOC100705471,LOC101477094,LOC102310056,LOC102199257 coding downstream 1097804 23633683 ~ 23666857 (-)
LOC120552656 cdh18,LOC102310872 coding downstream 1456626 23128644 ~ 23308035 (-)
LOC120552302 NA coding upstream 1695 24771906 ~ 24777805 (-)
psme2 psme2 coding upstream 92299 24862510 ~ 24869834 (-)
emc9 emc9 coding upstream 148161 24918372 ~ 24923172 (-)
LOC120552233 LOC100707500,LOC102204569,LOC102296665,LOC101471184 coding upstream 322366 25092577 ~ 25179568 (-)
LOC120552454 NA coding upstream 412001 25182212 ~ 25197533 (-)
G222062 cdh20,LOC103456703,LOC102782851 non-coding downstream 154982 24609461 ~ 24609679 (-)
G222041 LOC104961439,LOC108234716,LOC107988374,LOC107089423 non-coding downstream 571861 24189134 ~ 24192800 (-)
G222039 NA non-coding downstream 586674 24177740 ~ 24177987 (-)
G222038 LOC104961439,LOC107383085 non-coding downstream 596112 24168312 ~ 24168549 (-)
G222037 LOC105920180,LOC107100491,LOC106522295,LOC107383085 non-coding downstream 611899 24152479 ~ 24152762 (-)
G222088 NA non-coding upstream 24655 24794866 ~ 24795350 (-)
LOC120552180 NA non-coding upstream 124361 24894572 ~ 24904700 (-)
LOC120552179 NA non-coding upstream 158113 24928324 ~ 24954497 (-)
G223155 NA non-coding upstream 226415 24996626 ~ 25023914 (-)
G223181 NA non-coding upstream 237278 25007489 ~ 25011818 (-)
LOC120552322 cdh12,LOC108234660,LOC100695194,LOC101477368 other downstream 1245135 23401543 ~ 23519526 (-)
smpx smpx other downstream 2546280 22202767 ~ 22218381 (-)
LOC120552473 NA other downstream 2644050 22114382 ~ 22120611 (-)
tfr1b NA other downstream 2753575 21990017 ~ 22011086 (-)
rbis LOC101064519,LOC103367294,LOC102312013 other downstream 3542994 21217680 ~ 21221667 (-)
avl9 avl9 other upstream 26378 24796589 ~ 24854888 (-)
msl2b msl2,LOC102304425,LOC102778660 other upstream 193206 24963417 ~ 24968106 (-)
LOC120552232 LOC103371349 other upstream 265673 25035884 ~ 25086902 (-)
LOC120552299 NA other upstream 786262 25556473 ~ 25562540 (-)
LOC120552722 NA other upstream 952279 25722490 ~ 25738940 (-)

Expression


Co-expression Network