itgb1a (itgb1,LOC104924090)


Basic Information

Item Value
gene id itgb1a
gene name itgb1,LOC104924090
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 6640718 ~ 6683933 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039790232.1
catggtttggCCAAGAGGAGCGGAGCCCTGCGGGTCTGCCTGGCCGCTTTCCCCCGATTAGACTGAGGAAAAGAGGTCCACTCAGACGCTGTTGGGATTTTCTTTCATTCTCCAGCTACCAAAACTGTTCCCGCATTTGGTTTTAATATAAACTGTGTATACATTTTCTCTGTAGAGGGAAGTTGGGGGATGGAATGAGTAGCAGGGGAAATCTACCGTGACTTTTTCGGAGGAGAAAGTGGCCCCCGGTGCCAACAGGGCAGATAGTTGCTGCCGCTGTCTGTCTAGCGGATCATCATCGCTGGGTGCTGGGGAAGAGAAGCTAGCTTACTTCTGTATGTTGTCGCGGAAATTCACCACAGCGCCAAGatgGACCTGAAGCTGCTCTTGATATACACATTGTTAGGAGTCTTTTGTTACAGTAATGCTCAGAAAGAGGGGAACGAGTGCATCAATGCCAATGCCAAATACTGCGGGGAGTGCATCCAGGCGGGAGCCAAATGTGGCTGGTGTAAAGACCCGAAATTCCTGAAACAGGGTGAGACTGTGTCGACCCGTTGTGACGAGCTGCAGTCTTTGATAAAAAGGGGCTGTAGTGATGCCATGATCGAGAACCCACACGGGGAACAGAAGACTCTCAAGAACAAAGCAGTGACAAATCGCAGAAAGGGAGCAGAGAAACTGAGGCCCGAGGACATCACGCAGATCCAGCCCCAGAAACTCAGCCTCACCCTCCGATCTGGTGAGCCTCAAACTTTCAACTTAAAGTTCAAACGAGCGGAAGATTATCCCATCGACCTGTACTACTTGATGGACCTGTCCTACTCCATGAAGGACGATCTGGAGAACGTCAAGAACCTGGGAACAAGTCTAATGCTGGAGATGTCAAAGATCACCTCTGACTTCAGGATAGGTTTTGGCTCCTTTGTGGAAAAGACAGTCATGCCATACATCAGCACTACCCCGGCCAAGCTGCTAAACCCATGCACAGGCGACCAGAACTGCACCAGCCCGTTCAGCTACAAGAACGTGCTGAAGCTGACCAGCGATGGCAAGAGGTTCAACACCCTGGTGGGCCAGCAGCACATCTCCGGAAACCTGGACTCTCCTGAGGGGGGGTTTGATGCCATCATGCAAGTGGCTGTGTGTGGGAATCATATTGGTTGGAGGAATGTGACTCGTCTGCTTGTGTTCTCCACTGATGCTGGCTTCCACTTTGCCGGCGATGGCAAACTGGGTGGCATCGTTCTGCCCAATGATGGAAAATGTCACTTGGAGGACAATGTGTATACCATGAGCCACTACTATGACTATCCCTCCATTGCCCACCTGGTTCAGAAGCTGAGCGACAACAACATTCAGACTATCTTTGCAGTCACAGAGGAGTTCCAGCCCGTTTACCAAgAGCTTAAAAATCTGATACCAAAGTCTGCAGTGGGCACTCTGTCTGCCAACTCAAGCAATGTAATCAACCTTATTATAGACGCTTACAATtcTCTCTCGTCCGAGGTTATTTTGGAGAACAGCAAGCTTCCAGAGGGAGTGACCATAGCTTACACGTCCCGCTGTAAGAACGGAGTGGTTAGTGAGGGCGAAAGTGGACGCAAGTGCTCCAACATCTCCATCGGAGATGAGGTGATGTTTAGCATCAGTGTGACATCTAAGGGCTGTCCGAAACAAGGCAAGCCTGAGATCATCAAGATAAAGCCCCTGGGATTTACGGAGGAGGTGGAGATCACCCTCAACTTCATTTGTGAGTGCGAATGCAACAAGGACGGTATCAAGAACAGTCCACTCTGCCACTTTGGTAACGGGACCTATGAATGTGGAGCCTGCAAGTGTAATGAAGGACGCGTGGGCAGACAGTGTGAATGCAGCAGCAACGATGTGGCCACAGAGGACATGGACCGGACCTGCCGCAAAGACAACGGCACCGACATCTGCAGCAACAACGGAGACTGTGTGTGCGGCACATGTGAGTGCAAGAAGAGGGACAACCCTGAGGAGAGGTACAGCGGCCTGTACTGCGAGTGTGACAACTTCAACTGCGACCGCTCTGGAAACAAACTGTGTGGAGGGCATGGCCGCTGTGAGTGCAGAGTGTGTATCTGTGACCCCATGTGGACCGGGAGTGCCTGCGATTGCTCTCTGGACAACAGCACGTGTATGGCCAGCAACAAGCAGATCTGTAACGGCCGAGGAACGTGTGAATGTGGCACTTGCAAGTGCACTGACCCCAAATTCCAGGGTCCCACCTGTGAAACGTGCCCTACCTGCCCAGGAGTCTGTACTGAACACAAAGAGTGCGTCCAGTGCCGGGCGTTTGGCACCGGTGAGAAGAAGGACACATGTGAGAGAGACTGCAGCTACTTCAACCTGATCAAAGTGAAGGACCGGGACAAGCTGCCCCAGCCCAACGACGCCTCTTACCCCGTGATGCACTGCAAGGAGAGGGACGCCAACGACTGCTGGTTCTACTACACCTACGCTGTCAACAACAACACTGAGAAGGAGGTCCATGTGGTGGACACGCTGGACTGCCCCGCTGGTCCTGACATCATCCCCATTGTGGCAGGCGTGGTCGCCGGCATCGTCCTGATTGGCTTAGCTCTGCTGCTCATCTGGAAGCTGCTGATGATCATCCACGACAGAAGAGAATTCGCCAAGTTTGAGAAGGAGAAGATGAACGCCAAGTGGGATACGCAAGAAAACCCTATATACAAGAGTCCTATCAATCAGTTCCAGAATCCAAGCTATGGACGTAAAGCTGCTGTCCTTTaaGGTGAAAATCCCATCTACAAAAGTGCTGTCACGACTGTGGTCAATCCCAAATATGAAGGAAAATGATGGCGTCATAGTTTATCAATGAACTCTGCTATCAAGTATCTGACAACTGCAGTATTTACCACGGGTTTGGGGTCTGGGGGGGGGACCTGTGGTGGAATTGACATCATTTCTTTTTGCTACTTTACCAGTATAATGTACCACGCCACCACTGCATCTGTATTTTTACTAACACTTacaatttatatatttgttgtattttggatgtacagtatacagtatgtgtatatactTTTAAGTTACATATTTGCAAAAATGATGACCTGAAGGTGTTTTTCCTAACACAGGACTGGTATTGGCAGAGGATTTAGCTTTTTGTGGACACGATgcatatacaatatatgttaCATGAATTCCTCAgcttctgtctcttttctcagACACTTCTCTGTCTTGTCGTCTCTCTGTGCACTGACTTcctgtgtgtctccgtgtgttcCAGACAGGACCTGAGTTTAATGTGTAAATTGTCAGCCATAACGGCACATTATgtcaatgtgtgtttgtgtgtgtatatatatatatatagaaaacaaatgcaataGGAAGTATTGAATAATATTTCACATTCAACTTAGATTGGATAGTTATGTTGAATTACAGTAGATTATGCAGTGGTTGTAAATGTAGTTTTTAACTGCAGCTCAGAAACACACTGTATTGCACTCTTATTGAGTACTGTTGTctaaagactaaatacacaagatgaaaaataaatatcaaCTATCATTATTTGAATTGTTGATATACTATCACAAAGGGACTGTATACCACTTGTTAAAATTATGAAATTGCGGCAATGTTGAACAATTGAAGCATTGTATAGTTATGAAACAAGTTGTAATGAACTAATGAAATATTGCTGTAATTGCCAACTGCGTTAACTTTTATTACTCATTCTCAGGTCCTCTCCTGTGTTTTTGTCAAGTAtgccaaaaatatgttttatgtttgccTGTTCCATGAAGCAGTGGACTTTTTTTAGATTATAAGactgaaacatgtattttttcAGACTTCACATGAATCACCTCTGAAATGCTTTCACACATAAATGCCTCTAATGTAACACACACAAGCCTTTACAGTATTGTTTTAAAAGTGCCTTTTATTTCAATACCATGTTCCCTATCAATGCTGTTTGagttatttattaaataaagtacaaaaacagtt
>XM_039790233.1
catggtttggCCAAGAGGAGCGGAGCCCTGCGGGTCTGCCTGGCCGCTTTCCCCCGATTAGACTGAGGAAAAGAGGTCCACTCAGACGCTGTTGGGATTTTCTTTCATTCTCCAGCTACCAAAACTGTTCCCGCATTTGGTTTTAATATAAACTGTGTATACATTTTCTCTGTAGAGGGAAGTTGGGGGATGGAATGAGTAGCAGGGGAAATCTACCGTGACTTTTTCGGAGGAGAAAGTGGCCCCCGGTGCCAACAGGGCAGATAGTTGCTGCCGCTGTCTGTCTAGCGGATCATCATCGCTGGGTGCTGGGGAAGAGAAGCTAGCTTACTTCTGTATGTTGTCGCGGAAATTCACCACAGCGCCAAGatgGACCTGAAGCTGCTCTTGATATACACATTGTTAGGAGTCTTTTGTTACAGTAATGCTCAGAAAGAGGGGAACGAGTGCATCAATGCCAATGCCAAATACTGCGGGGAGTGCATCCAGGCGGGAGCCAAATGTGGCTGGTGTAAAGACCCGAAATTCCTGAAACAGGGTGAGACTGTGTCGACCCGTTGTGACGAGCTGCAGTCTTTGATAAAAAGGGGCTGTAGTGATGCCATGATCGAGAACCCACACGGGGAACAGAAGACTCTCAAGAACAAAGCAGTGACAAATCGCAGAAAGGGAGCAGAGAAACTGAGGCCCGAGGACATCACGCAGATCCAGCCCCAGAAACTCAGCCTCACCCTCCGATCTGGTGAGCCTCAAACTTTCAACTTAAAGTTCAAACGAGCGGAAGATTATCCCATCGACCTGTACTACTTGATGGACCTGTCCTACTCCATGAAGGACGATCTGGAGAACGTCAAGAACCTGGGAACAAGTCTAATGCTGGAGATGTCAAAGATCACCTCTGACTTCAGGATAGGTTTTGGCTCCTTTGTGGAAAAGACAGTCATGCCATACATCAGCACTACCCCGGCCAAGCTGCTAAACCCATGCACAGGCGACCAGAACTGCACCAGCCCGTTCAGCTACAAGAACGTGCTGAAGCTGACCAGCGATGGCAAGAGGTTCAACACCCTGGTGGGCCAGCAGCACATCTCCGGAAACCTGGACTCTCCTGAGGGGGGGTTTGATGCCATCATGCAAGTGGCTGTGTGTGGGAATCATATTGGTTGGAGGAATGTGACTCGTCTGCTTGTGTTCTCCACTGATGCTGGCTTCCACTTTGCCGGCGATGGCAAACTGGGTGGCATCGTTCTGCCCAATGATGGAAAATGTCACTTGGAGGACAATGTGTATACCATGAGCCACTACTATGACTATCCCTCCATTGCCCACCTGGTTCAGAAGCTGAGCGACAACAACATTCAGACTATCTTTGCAGTCACAGAGGAGTTCCAGCCCGTTTACCAAgAGCTTAAAAATCTGATACCAAAGTCTGCAGTGGGCACTCTGTCTGCCAACTCAAGCAATGTAATCAACCTTATTATAGACGCTTACAATtcTCTCTCGTCCGAGGTTATTTTGGAGAACAGCAAGCTTCCAGAGGGAGTGACCATAGCTTACACGTCCCGCTGTAAGAACGGAGTGGTTAGTGAGGGCGAAAGTGGACGCAAGTGCTCCAACATCTCCATCGGAGATGAGGTGATGTTTAGCATCAGTGTGACATCTAAGGGCTGTCCGAAACAAGGCAAGCCTGAGATCATCAAGATAAAGCCCCTGGGATTTACGGAGGAGGTGGAGATCACCCTCAACTTCATTTGTGAGTGCGAATGCAACAAGGACGGTATCAAGAACAGTCCACTCTGCCACTTTGGTAACGGGACCTATGAATGTGGAGCCTGCAAGTGTAATGAAGGACGCGTGGGCAGACAGTGTGAATGCAGCAGCAACGATGTGGCCACAGAGGACATGGACCGGACCTGCCGCAAAGACAACGGCACCGACATCTGCAGCAACAACGGAGACTGTGTGTGCGGCACATGTGAGTGCAAGAAGAGGGACAACCCTGAGGAGAGGTACAGCGGCCTGTACTGCGAGTGTGACAACTTCAACTGCGACCGCTCTGGAAACAAACTGTGTGGAGGGCATGGCCGCTGTGAGTGCAGAGTGTGTATCTGTGACCCCATGTGGACCGGGAGTGCCTGCGATTGCTCTCTGGACAACAGCACGTGTATGGCCAGCAACAAGCAGATCTGTAACGGCCGAGGAACGTGTGAATGTGGCACTTGCAAGTGCACTGACCCCAAATTCCAGGGTCCCACCTGTGAAACGTGCCCTACCTGCCCAGGAGTCTGTACTGAACACAAAGAGTGCGTCCAGTGCCGGGCGTTTGGCACCGGTGAGAAGAAGGACACATGTGAGAGAGACTGCAGCTACTTCAACCTGATCAAAGTGAAGGACCGGGACAAGCTGCCCCAGCCCAACGACGCCTCTTACCCCGTGATGCACTGCAAGGAGAGGGACGCCAACGACTGCTGGTTCTACTACACCTACGCTGTCAACAACAACACTGAGAAGGAGGTCCATGTGGTGGACACGCTGGACTGCCCCGCTGGTCCTGACATCATCCCCATTGTGGCAGGCGTGGTCGCCGGCATCGTCCTGATTGGCTTAGCTCTGCTGCTCATCTGGAAGCTGCTGATGATCATCCACGACAGAAGAGAATTCGCCAAGTTTGAGAAGGAGAAGATGAACGCCAAGTGGGATACGGGTGAAAATCCCATCTACAAAAGTGCTGTCACGACTGTGGTCAATCCCAAATATGAAGGAAAATGATGGCGTCATAGTTTATCAATGAACTCTGCTATCAAGTATCTGACAACTGCAGTATTTACCACGGGTTTGGGGTCTGGGGGGGGGACCTGTGGTGGAATTGACATCATTTCTTTTTGCTACTTTACCAGTATAATGTACCACGCCACCACTGCATCTGTATTTTTACTAACACTTacaatttatatatttgttgtattttggatgtacagtatacagtatgtgtatatactTTTAAGTTACATATTTGCAAAAATGATGACCTGAAGGTGTTTTTCCTAACACAGGACTGGTATTGGCAGAGGATTTAGCTTTTTGTGGACACGATgcatatacaatatatgttaCATGAATTCCTCAgcttctgtctcttttctcagACACTTCTCTGTCTTGTCGTCTCTCTGTGCACTGACTTcctgtgtgtctccgtgtgttcCAGACAGGACCTGAGTTTAATGTGTAAATTGTCAGCCATAACGGCACATTATgtcaatgtgtgtttgtgtgtgtatatatatatatatagaaaacaaatgcaataGGAAGTATTGAATAATATTTCACATTCAACTTAGATTGGATAGTTATGTTGAATTACAGTAGATTATGCAGTGGTTGTAAATGTAGTTTTTAACTGCAGCTCAGAAACACACTGTATTGCACTCTTATTGAGTACTGTTGTctaaagactaaatacacaagatgaaaaataaatatcaaCTATCATTATTTGAATTGTTGATATACTATCACAAAGGGACTGTATACCACTTGTTAAAATTATGAAATTGCGGCAATGTTGAACAATTGAAGCATTGTATAGTTATGAAACAAGTTGTAATGAACTAATGAAATATTGCTGTAATTGCCAACTGCGTTAACTTTTATTACTCATTCTCAGGTCCTCTCCTGTGTTTTTGTCAAGTAtgccaaaaatatgttttatgtttgccTGTTCCATGAAGCAGTGGACTTTTTTTAGATTATAAGactgaaacatgtattttttcAGACTTCACATGAATCACCTCTGAAATGCTTTCACACATAAATGCCTCTAATGTAACACACACAAGCCTTTACAGTATTGTTTTAAAAGTGCCTTTTATTTCAATACCATGTTCCCTATCAATGCTGTTTGagttatttattaaataaagtacaaaaacagtt

Function

symbol description
itgb1 Enables several functions, including collagen binding activity involved in cell-matrix adhesion; enzyme binding activity; and fibronectin binding activity. Contributes to C-X3-C chemokine binding activity. Involved in several processes, including cell surface receptor signaling pathway; cell-cell adhesion mediated by integrin; and regulation of signal transduction. Acts upstream of or within calcium-independent cell-matrix adhesion and positive regulation of apoptotic process. Located in several cellular components, including filopodium; neuromuscular junction; and sarcolemma. Part of integrin complex. Colocalizes with focal adhesion; perinuclear region of cytoplasm; and ruffle membrane. Biomarker of lung non-small cell carcinoma and lung small cell carcinoma.

NR:

description
PREDICTED: integrin beta-1-like isoform X1

GO: NA

KEGG:

id description
K05719 ITGB1, CD29; integrin beta 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039790232.1 True 4020 mRNA 0.47 17 6640718 6683933
XM_039790233.1 False 3942 mRNA 0.47 16 6640718 6683933

Neighbor

gene id symbol gene type direction distance location
LOC120552351 LOC103377033,LOC108245190,LOC101477525 coding downstream 1031 6626589 ~ 6639687 (-)
waca wac coding downstream 363414 6247422 ~ 6277304 (-)
bambia bambi,LOC102792619 coding downstream 399747 6235855 ~ 6240971 (-)
LOC120552249 hecw1 coding downstream 576668 5971194 ~ 6064050 (-)
LOC120552212 LOC102200884,LOC107389439,LOC103367775 coding downstream 792321 5847441 ~ 5848397 (-)
nrp1a nrp1 coding upstream 13315 6697248 ~ 6762956 (-)
LOC120552354 pard3 coding upstream 268896 6952829 ~ 7335452 (-)
trnaw-cca_32 NA coding upstream 617136 7301069 ~ 7301140 (-)
trnaw-cca_33 NA coding upstream 618763 7302696 ~ 7302767 (-)
trnaw-cca_34 NA coding upstream 657891 7341824 ~ 7341895 (-)
G218199 NA non-coding downstream 185752 6426008 ~ 6454966 (-)
G218177 NA non-coding downstream 386742 6253146 ~ 6253976 (-)
G218176 NA non-coding downstream 411725 6228775 ~ 6228993 (-)
G218166 NA non-coding downstream 629653 6010337 ~ 6011065 (-)
G218165 NA non-coding downstream 650788 5988889 ~ 5989930 (-)
G218327 NA non-coding upstream 897624 7581557 ~ 7581756 (-)
LOC120552501 NA non-coding upstream 907764 7591697 ~ 7593836 (-)
G218332 NA non-coding upstream 949638 7633571 ~ 7634213 (-)
G218335 NA non-coding upstream 996217 7680150 ~ 7680411 (-)
G218347 NA non-coding upstream 1056340 7740273 ~ 7740524 (-)
G218085 LOC107687935 other downstream 940142 5700229 ~ 5700576 (-)
G218019 NA other downstream 1604014 5027505 ~ 5036704 (-)
G217837 NA other downstream 2699389 3936010 ~ 3941329 (-)
G217780 chchd7,LOC102799933 other downstream 2936361 3692952 ~ 3704357 (-)
f3a NA other downstream 3184674 3437802 ~ 3456044 (-)
G218453 adarb2 other upstream 1510996 8194929 ~ 8195879 (-)
G218471 NA other upstream 1746531 8430464 ~ 8430930 (-)
prkdc prkdc other upstream 2113848 8797781 ~ 8851726 (-)
LOC120551928 LOC104943218,LOC103369878,LOC100710535,LOC102301415,LOC101469805 other upstream 2273476 8957409 ~ 8970638 (-)
cngb3.1 LOC103363254,LOC102786718,LOC108428960,LOC104948783 other upstream 3149529 9833462 ~ 9848241 (-)

Expression


Co-expression Network