cdh10a (LOC102783614,LOC100705471,LOC101477094,LOC102310056,LOC102199257)


Basic Information

Item Value
gene id cdh10a
gene name LOC102783614,LOC100705471,LOC101477094,LOC102310056,LOC102199257
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 23633683 ~ 23666857 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039790263.1
acagacacacacacactcccatacACATTCGCACCAGCTGTGCTGTTGTCAGTCTTGGAATGTAAGCACTGCCGTGAGGAGTCAGATTCTCCAGCGCTAAGCACTGCTAAGGAGTAGGGACACAGCACCGTGCACTCAGTGACACAGATGGATGCTAAGCTGTAAAACTCAAAAAGGGATCCAAAGGACATCAAAGAGAGGAATACAATGTCTGTTCTGTTGACACTGCCTTCCAGTGTTCATCCCATCAGAAGCTCATTACCATAATTCAGAAGTCATCCAGGACATTTCCCAGCTGATTGGATACCATGATAACCAATCAGGTTCTGCTTCTCCTGATGCTCTCTATCCTGTGGCCCAGTACTGCCCTGCCTTTCACACCTGGGAATATTGGGAATCTGTTTGGGATGCCAGAGAGTGATGGCAGGATTCTCCAGCGCTCCAAACGTGGATGGATGTGGAATCAATTCTTTCTGCTCGAGGAGTACACAGGAAATGACCATCAATATGTCGGCAAGCTGCACTCCAACATGGACAAAGGTGATGGCAATGTGAGGTATGTTTTGACTGGAGAAGGGGCAGGCACCCTGTTCCTGATTGATGAGAAGTCTGGGGATATTCATGCCACCAAGAGGCTGGACAGGGAAGAGAAAGCTATGTACACGCTCATTGCAAAGGTCCTGGATAGGAAAACCAATGCAGAGCTGGAGCCTGACACTGAATTTAACATAAAAATCCACGATATTAACGACAATGAGCCAAGGTTTGCAAAGGAAATCTACTTCGCCAGTGTCCCTGAAATGTCCGAAGTTGgtaCATCAGTTGTCACCGTGACTGCCAATGATGCTGATGATCAGACGTATGGGAACAGCGCCAAGCTTGTCTATAGCATTCTACAGGGACAACCATACTTCTCTGTGGATTCTGAAAATGGCACCATCAAGACAGCCCTGCCTGGCATGGACAGAGAAGTCAAGGAAAACTACCAGGTTGTGATCCAAGCTAAAGACATGGCCGGACAGATGGGCGGGCTTTCAGGGACAACAACAGTCAGCATCACCCTCTCCGACGTGAACGACAGTCCGCCACGCTTTGCTAACCATTCCTTCCGTGTGACAGCTGTGGAGTCGACAGAGATTGGAGGTGCCATTGGACGTATTAAGGCTGATGATCCAGATGTCGGGCGTAATGCTGAGATGGAGTACAGTATCGTCGGTGGTCATGACACGTTCAACATTATCACTGACCAAACCACACAAGAGGGAGTCATCATAATCAAAAAGGCACTGGATTACGAAAATAAGAGGGACTATGAGTTCAGAGTGGAGGTGAAAAACACCTACTTAGACGCAAGGTTCATCCACGGTTTGCAATTCAAAGACTACGCCACAGTCAAGGTAACCGTAGAGGATGTGGACGAGCCTCCCGTTTTCACCAGGAACCCTTACATCATCGAGGTGCATGAGGACACAGCTGCTGGCAGCTTCGTCGGTGTGGTGTCGGCCAGGGACCCCGATGCTGGCAACAAGCCAGTCAAATACTCCATTGATCGGCATACAGATCTAGAGAGGCTGTTCAACATTGATTCTGTGAACGGCACCATCACAACACTGAAAGCACTGGACAGAGAAATGTCTAAATGGCACAACATTTCTGTGGTGGCCACTGAAATAAATAACCCACGTCAGACAACTCGAGTGCCTGTGTTCATCAAGGTCTTAGATGTCAATGACAACGCCCCTGAGTTTGCAATGTCCTATGACACATTTGTCTGTGAGAATGTCAAAGCAGGACAGCTGATTCAGACCATAAGTGCTGTTGACACAGATGAACCCCTTGTTGGACACAAGTTTGTCTTTAGCATAAGTTCCACCAATCCAAACTTCACAATTGTTGACAGGGAAGATAACACTGCCAATATCCTGACGCGGAGGGGAGGTTTCAGCCGGCGTGAGATGAGCATGTACTTCCTGCCTGTAGTGATCTCAGACAATGACTACCCGATTCAAAGCAGCACCAGTACACTGATCGTGCGCGTGTGTGCTTGCGACAGCCGTGGAAACATGCAGTCCTGTAACCCCGAGGTCCTGCCCTTCTCAGATGGTCTCACAACTGGAGCTCTGGTGGCCATCCTGCTCTGTGTCATTATTCTCCTCATGATCGTGGTGATGTTTGCTGCCctgaggagacagaggaagaaggAGCCTCTGATCATCTCCAAAGAGGATGTCAGAGACAACGTCGTCAGCTACAACGATGAAGGGGGCGGAGAGGAGGACACTCAGGCCTTTGATATCGGCACGCTCCGCAACCCAGAGGTGATGGATGCTAACAAGCTGCGCAGGGACATCATACCCGAAATGCTGTTTCCCTTTCGGAGGACATCACCTATAAAGGATAACACGGACGTCAGAGACTTCATTAGCGGGAGGCTTCAGGAGAACGATTCGGATCCAACGGCGCCCCCCTATGACTCCCTGGCCACGTACGCGTATGAGGGCAGCGGGTCACTGGCGGAATCCCTCAGTTCACTGGAGTCCGCTGCCACTGAGGGGGACCACGATTACGATTACCTCAGCAACTGGGGACCACAGTTCAAAAAGTTGGCAGAGATGTACATAGGGAAGAGCCCCGACAGAGAGACCTAGACAGAGACATGATGGTCTCTCTTTTTCCATGCCCATTTTTTTCCCTATCCgtttatctagctagctagctagctagccacgcAGCTATttgtctagctagctagctagccacgcAGCTATTTGtctagttagttagctagccaGCTAGTTGACCGTCtgtctacctatctatctatctatctatccagcTATCTATCTGTTTATCCGTCtagtttgctagctagctagttcgcTAGTTAACTAGTAGTCTGTTTGAATCTCACAGGCGTGCgtgcgcacacaaacacacacaaagacagaaattcCTGCAATCCACTTGTGGATGCTAAAAGGGAAATTAACACTTGAACTGAGTTGAGCTTTCTCATTAATGGAGATAGAGTATAATTCTCAAAGTTTTACTGTTTTTGGTCATAATCAGTAAAGATGCCTTTGAATTTTAGGATTTTTTGTGAACTATGGTGTGGACAATGTGTTTTGTAATTGACCTGAGAGATAGTAGTATTGTATACTATCAATGTTTAATGGCATTGGACTGGGTTTGGGTGGGTGAGAGAAGGAGTCAAGTGGTTTTTCCAGCCACCTCCATTAAATACTGTAACTGTACAAAGTGTTTTTAATGATGGACATCCTATATGCTATTTGCTATCTTTGTTTGACAAGCAATGTTCATGTGAGTGGTTGGTGCAGTTTATTTGTCAAACTGTGAATTCATTTCATCATATAGGTGTAATATGTAATGGAAAGTGTATGTTGTAGGAGAACTGTCATACACTGACAATTCATACTGTTTGAATGCTGagtcatattgtttatatttatatttttatacttattttcttaataaaatgatgtaaaaaaaagaaagaatcagCTACAGTTCCAGTCGATTGTCTTTATGTGTGGTTTTTAAAAGGCTGTTGCTGTAGATGTTGTATAGATGTATTAAGGACAAACATAATGGCAGTTTCCTGAAGAAAAGCAAGTATCCAAATGTCATGCAGTTTGCGTGTTGGGAAAACTGTTCCACCCACTATAAATATCAATGGAGATGTGGTTGATCAAAACATTTACAGAACCGTCTAGGTACGCAGTGGGATAATGCAGGCCATGTTAAGATGTATTAAAACTGTTAGGCCTAGGTCAGTGTACATGGCGGGGGATTACATAACAGCATTGAATTTTCAGTTGCTTCTTCTTTTATCTGGGTTAGTATTGTTAAACATTTATAGTTTTCAGAATAAAACAGAGGGTAAAACGTGTATAGAGacccagaaaaaagaaaaggaaagtaaGACCtctaatctttatttatttatctatctattttaTATCAACATTGCAATAACTAAATTTCCCTTGGCTGAAAAcatcaaattaattaaaaaatctaGCTGTCTTGTTAGCATAACCACGTTGCTCCTGAAGTTGACAAGCTGCCTGAATTCAGCAAAGATGTAAGAGGTGCTTGGGTTTTGACAGACGAATATCcctacagtggtggaatgtcgTAAGTAATGCAGTGCTATGTATTTTTGTGGGTAGATGTATTTTGTACGCAGATTTAAGATTAATCTAATCCGTATTTGTAGCAACATGTAAGGCCCAGGACATGGTGCATTGCCCTCCACAGTGCATCTCATTTTGACTGGAGTTGGACTTGGatattctttcttcttcttcgaaAACTGACTTTAAGAAGAATAGTTTCTTGTTTGCTATACCCATTGAGACATCATGAATGATACCTGAGGAGCAAGAGTCATTGTGTGGGTACATCAATGATAAATTATCTCTCAACTGTGTGCTTAATAGTgtccgggttggatcagtggtaAAGCATGCGCACATATACTGGGAGGTTTATGTCTCGACgcaggtccagggttcgaatccgacccgttacaatttcctgcatgtcttcaaaaattaaaggcggaaaagcccaaaaaaatcatctaaacaaacaaacaaaaaactgtgtGCTTAATCTTTACCGGGAAAcctagcacaatactcagttcatTAAACAAACCAAAGCCGAACAGAACTAAAAGCCAGAAGAAAATGATGTTTCCCAACTTAAAGTATAATAACTGTGCTTGGTTAATTACACACTCATCTGCAAATGTTCTGTTATTCACAACAGTACTTGCTGATTAGTGGGCAGCTGTGGAGATGACAATACCTCCAATCAATGGCCTTCTCACGTTGTTTCACTTGATTTCATATCTTAACAGCTGCCAGCTTACTGTTGCGGTGCCACACATGTACTGTAGCTGTTGtcctatttttttaatgtatgatTCCTGAAGTAGTTccaaccagtggtgtagtctgtGTGATACGCAAGTATATGCAAtgtacccactaagaaagctccaggatttccatatacccactgaaaa

Function

NR:

description
PREDICTED: cadherin-10-like

GO: NA

KEGG:

id description
K06802 CDH10; cadherin 10, type 2, T2-cadherin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039790263.1 True 5056 mRNA 0.44 12 23633683 23666857

Neighbor

gene id symbol gene type direction distance location
LOC120552656 cdh18,LOC102310872 coding downstream 325648 23128644 ~ 23308035 (-)
LOC120552718 NA coding downstream 562786 23068720 ~ 23070897 (-)
LOC120552717 LOC104965202,LOC103365305 coding downstream 712427 22912562 ~ 22921256 (-)
LOC120552328 epc1,LOC102784371,LOC100694393 coding downstream 745452 22841027 ~ 22888231 (-)
LOC120552530 LOC103365300 coding downstream 831934 22697027 ~ 22801749 (-)
drosha drosha coding upstream 526521 24193378 ~ 24297851 (-)
mc4r LOC104930272,LOC103365861,LOC104961440 coding upstream 690752 24357609 ~ 24361216 (-)
rnf152 rnf152 coding upstream 993254 24660111 ~ 24723840 (-)
LOC120552289 NA coding upstream 1097804 24764661 ~ 24770211 (-)
LOC120552302 NA coding upstream 1105049 24771906 ~ 24777805 (-)
G221962 NA non-coding downstream 318790 23314688 ~ 23314893 (-)
G221960 NA non-coding downstream 376849 23256489 ~ 23256834 (-)
G221950 NA non-coding downstream 513395 23119778 ~ 23120288 (-)
LOC120552653 NA non-coding downstream 561852 23070954 ~ 23071831 (-)
G221933 NA non-coding downstream 593549 23039849 ~ 23040134 (-)
G221999 NA non-coding upstream 6003 23672860 ~ 23673189 (-)
G222001 NA non-coding upstream 24556 23691413 ~ 23691962 (-)
G222012 NA non-coding upstream 156496 23823353 ~ 23823678 (-)
G222037 LOC105920180,LOC107100491,LOC106522295,LOC107383085 non-coding upstream 485622 24152479 ~ 24152762 (-)
G222038 LOC104961439,LOC107383085 non-coding upstream 501455 24168312 ~ 24168549 (-)
LOC120552322 cdh12,LOC108234660,LOC100695194,LOC101477368 other downstream 114157 23401543 ~ 23519526 (-)
smpx smpx other downstream 1415302 22202767 ~ 22218381 (-)
LOC120552473 NA other downstream 1513072 22114382 ~ 22120611 (-)
tfr1b NA other downstream 1622597 21990017 ~ 22011086 (-)
rbis LOC101064519,LOC103367294,LOC102312013 other downstream 2412016 21217680 ~ 21221667 (-)
avl9 avl9 other upstream 1129732 24796589 ~ 24854888 (-)
msl2b msl2,LOC102304425,LOC102778660 other upstream 1296560 24963417 ~ 24968106 (-)
LOC120552232 LOC103371349 other upstream 1369027 25035884 ~ 25086902 (-)
LOC120552299 NA other upstream 1889616 25556473 ~ 25562540 (-)
LOC120552722 NA other upstream 2055633 25722490 ~ 25738940 (-)

Expression


Co-expression Network