cnn3a (cnn3,LOC102798192)


Basic Information

Item Value
gene id cnn3a
gene name cnn3,LOC102798192
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 3510772 ~ 3543793 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039790264.1
TGTCCTGCAGATAGCAGCCTACAGTCTCCGGTACTCTTCTCAGTCAACCTCACGGAATATTTCCCTCCTGTCTGGGTGTCCAACCGAGCCGAAGCAGCCAAGCAGGAGTTTTCCCACAGCAGCATCTGTGCTACATTGTAGCTGAGGAAATATATTCGGGTTTTTAcgagcaaaaaataaataaaaaatatcaagaaaatgacacattttaatAAGGGGCCAGCCTACGGATTATCTGCTGAAGTGAGAAGCAAAATTGCTCAGAAATATGACACACAAAAGGAGGAGGAACTCCGTTTCTGGATTGAGGAGGTGACAGGAATGTCTATCGGAGAGAACTTCCAGAAAGGCTTGAAGGATGGAGTCATCCTCTGCGAACTGATCAATAAGCTGCAACCTGGTTCGGTAAAGAAAATCAACCTTTCCCAGCTCAACTGGCACAAGCTGGAAAACCTTGGGAATTTCATCAAAGCTATCCTGGCCTTTGGCCTAAAGCCCAATGACATCTTTGAGGCCAATGACCTGTTTGAAAATGGGAACATGACTCAAGTCCAGACCACACTGCTCGCACTGGCCAGCATGGGAAAGACCAAAGGTATGGACTCAAAGATTGACATCGGGGTGAAATATGCAGACAAACAGGCTCGACATTTCGACGATGAGAAGATCAAGGCCGGTCAGTGTGTCATTGGACTGCAGATGGGGACAAACAAGTGTGCGAGTCAGGCTGGAATGACTGCCTACGGAACCCGAAGACATCTGTATGATCCAAAGACTCAGTCTGACAAACCCTACGACCAGACCACCATCAGCCTGCAGATGGGAACCAACAAAGGAGCCAGCCAGGCGGGCATGTCAGCCCCCGGTACCCGCAGAGACATCTATGACCAGAAGGTGGTGCAGCAGCCGCTGGACAACTCCACCATCTCCCTCCAGATGGGCACCAACAAGGTGGCGTCTCAGCGGGGCATGAGTGTGTACGGCCTGGGGCGGCAGGTCTACGACCCCAAGTACTGCGCCCCGCCGACGGAGCCGGTCATCCACGCCAACGGCAGCCAGGGCACCGGCACCAACGGCTCGGAGATCAGCGACAGTGACTATCAGGCCGAGTTCCCGGAGGACGAGTACCACGGAGGCTACCATGACGACTACAGCGCCCATTACAATGATCAGGGCATTGACTATTAGCGgagaccccccacccccctccagATCAGTATTACCTTAGTGTACTCTTATCAACTACGCAACAGAGCAAGTCTTTTGCTATCCTCACtagtctttttcttctctccgaGCATACGATGAATTGTTGCCTTGAGTGCTTTTCCTTCTTCACCTAGACTCTTTAATCTGAGCAGCAAAGGGTTGTGAGAAGCGGTAGTGGCATAGAATAATGAGATACAGTGCTGATAAATGTTTTTAcggcattgtttttttttttaataccccactttttaaatgtgttttaatgatgGAACACTGAAGTAGTGATAACTCTGTGGACCGATGGCGTAGCATCAGGTGAAGCTGCTGCATTCCAGTGTTTGCATTCCACGACTGAAACTGGGCTGACGATCCACTCGAAGAGAATTCAACAATAGGCTGATCTCGGACACGCACACAGAATGCACATACAGAGATTCACCTGACGCCACTTTTCAAGGCAATCCAATAGAGTAGAATGATCAAACTCTTAAAATGTTTGACATTAATTAGGGCTgccccctcttagtcgattagtcgactcatcgttttggtcttagtcgactaagatttctttagtccgttagtcatgttttcatgctgaatgacttcttTCCAAGAAACTTCGAGCACGTCGCTGGTAAACCGAAGAAAGattttaaaacaatgttttagCATGGTTCTTCCGTCAGTCAACAAAATCACGAGTgctaagcccagttcagaccaaagatttgcgacgaGACGAAACCGTTTTAGAACATCGTAGACAAaagcggtctgaaccggcccgtccCAGCTGGACTccaaccagctgatggtgtggctgcgactcagctggtggagtctccagaggctggttttacaacgtCAGAGACGTcgcctgtttcaacagccaatagagaagtcatctTGTAAAGTCAGCTACAATAAAATAATCCATAATCCACGttatttctgttacaaactgttaacagAGGCTCAGCGAccgagagaaggagagggagcgCCTCGGACAAAGCCCTGAATCAGAGAAAGAAAACGTGTTTTCaccgattcatcactagaaatgtaactgtagcaagcatctcactatcactaacgttatccacattcaaaTTTAGATGCAACAaatgaaatattcagctttAAAATGCCTGGAAGTCGGAAGTTAGGACGGAGGTACAAAGAgccgttgctatggagatgatacccCGTCCCGTCTCGtctcattggtgtaaactggcagctttcagaacgctgcagaccgacGTGCTGCAAGCAGTTGCAAGTTTACACTCGTCtcgtcgcaaatctttggtctgagcTGGACTTTAGTTGACTAAGAATTCctttaatcgagcacagccctactgaTCTCTCCTCTGTGTTCCGTCTGTATTCAACCACAGTTTTTGATACtggtattccttttttttttaactacatttaATCACTAgatagtgtttttattttttaaatgatgagCGGCTGGTGGCTGTTCGGATAGTGCAGATGACCAAACCCAAGCTGACTCTATTTTACAGTCACACTTTGTTCTATTACATGACTATATTTTCATATTATTCCCCCTTTGTATTCCCAAACTGTATTTATTGCAATGTCTCTCATTGTAAAACAGTCCACTGTTATATTGGTCGTAAAGAAATGATATGTTATAAATAAAGCCTTAAATTCTTCAA

Function

symbol description
cnn3 Enables cadherin binding activity involved in cell-cell adhesion. Involved in epithelial cell differentiation. Located in actin cytoskeleton and cytosol.

NR:

description
PREDICTED: calponin-3

GO:

id name namespace
GO:0031032 actomyosin structure organization biological_process
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039790264.1 True 2909 mRNA 0.46 7 3510772 3543793

Neighbor

gene id symbol gene type direction distance location
LOC120552550 NA coding downstream 110932 3345756 ~ 3399840 (-)
trnag-ucc_41 NA coding downstream 201202 3309499 ~ 3309570 (-)
map3k8 map3k8 coding downstream 290538 3212557 ~ 3220234 (-)
zeb1b zeb1,LOC102790219 coding downstream 650489 2801566 ~ 2860283 (-)
kcnh2b kcnh2,LOC102205662,LOC101467662 coding downstream 1309112 1823043 ~ 2201660 (-)
alg14 alg14,cnn3 coding upstream 11274 3555067 ~ 3570378 (-)
trnar-ucu_17 NA coding upstream 30938 3574731 ~ 3574828 (-)
trnar-ucu_18 NA coding upstream 31283 3575076 ~ 3575173 (-)
trnar-ucu_19 NA coding upstream 31969 3575762 ~ 3575859 (-)
trnar-ucu_20 NA coding upstream 32316 3576109 ~ 3576206 (-)
G217721 NA non-coding downstream 23416 3487037 ~ 3487356 (-)
G217717 NA non-coding downstream 49128 3460771 ~ 3461644 (-)
G217714 NA non-coding downstream 74446 3430653 ~ 3436326 (-)
G217638 NA non-coding downstream 499180 3008274 ~ 3011592 (-)
G217636 NA non-coding downstream 528762 2981798 ~ 2982010 (-)
G217746 NA non-coding upstream 1660 3545453 ~ 3548433 (-)
G217758 steap2 non-coding upstream 93702 3637495 ~ 3639938 (-)
G217771 NA non-coding upstream 114923 3658716 ~ 3659789 (-)
G217770 NA non-coding upstream 116727 3660520 ~ 3663878 (-)
G217778 NA non-coding upstream 122852 3666645 ~ 3666916 (-)
f3a NA other downstream 54728 3437802 ~ 3456044 (-)
LOC120552696 NA other downstream 167067 3315418 ~ 3343705 (-)
svila svil other downstream 374558 2988926 ~ 3136214 (-)
scospondin sspo,LOC104950179 other downstream 1091707 2214711 ~ 2419065 (-)
LOC120552169 LOC102294047,LOC102205018 other downstream 1699642 1658172 ~ 1811130 (-)
G217780 chchd7,LOC102799933 other upstream 149159 3692952 ~ 3704357 (-)
G217837 NA other upstream 392217 3936010 ~ 3941329 (-)
G218019 NA other upstream 1483712 5027505 ~ 5036704 (-)
G218085 LOC107687935 other upstream 2156436 5700229 ~ 5700576 (-)
G218453 adarb2 other upstream 4651136 8194929 ~ 8195879 (-)

Expression


Co-expression Network