znf438 (znf438,LOC104952784)


Basic Information

Item Value
gene id znf438
gene name znf438,LOC104952784
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 2878512 ~ 2935569 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039790273.1
GAAATAGTGACTGCAGGATGAAGCTTCCTCACCCTTTTGAAACACACATTGTTCACTATTAACACCTACTTGACGTCCATGTGactctatttattattttggtaCGCATAAGCTGAGTAAGGCAAATTGATTAATAACTCTGTCATATTTGTTCCACCCGCCGGATCAAGTTGACGGTTTGGCTCAAAATGGCTGGAGAGAAACAGTTATGAGGATCGACGGTCTTTACGAAAAAATGAGCCTGTCGTAGCTTGAAGGCGCTTCCTCCACATATCTGGGGACCCAGGGGGAGTGTGGAGAGGGGGGGACAGGACCACAACCCGGGCACCACCCAGAAAGAGGAGGAGCGAGGGAGCAGCGGAGGAGGAAGGATCATCCAATCGTTGGTAGCCAGTGAGTCCAGCCCTTCAGATGAAGAGCCTTCAGTTCCGGAGCATCGCCCCTAAGGCCCCGGCTGTGGTGCCCTCCCCCTCCCCTGCAGTCCTGTCCTGCCAGCCTCCCTCTGCCCTCCCTGAGGCTACCACCGCCTCCAGCCCCAAGTCCATCATTGTGCCCACCCAAAACTATGCACTGATGCAAATAGCAGGTCAGGATGGCACTTTCTCTCTGGTGGCACTGCCTCCTTCTGTCTCCCCTCAGACACCACAGCAACAAACCCAAAAGAACCTCAAGTTGCCCATTCCCAGGTACCAGCCAGTAAGGAGCAAGGGGACCACAGATAAGGTCAAGTCACCACCACTAGCTGCTAGGGTGAAAACAGCCTCCAAGGTTGCTGTGACAGCACAAACCAAGTCAGCGGTGAGTGGGGCATCAACCGTGATGAAGAAAAAACAGGAGTCCAAGCACACAACGGAAACCCTAGTGGCCAAAGAGGAGTCTTCAGAGCAGGTAATTCTGATTGACCCAGCTTCCTCTGACATCTCTGTCACTGCTCTACTCCCAGACAACGCTGTCCTGTACCCAGGTTCTCAGCTAGAGCGAGCACCAGATGGCTCTGAACGACCTGCTACAACTGGCCTTATTCAGAACCTCCAGTTCCCCCCTGCTGCTGGCAAAGGCTCCCCAGGCAAATCCCCAGAGGAAAGTAAGACGACAGTGAGGCTGTGCCAATCTAAGTCCACTGCAGCCCAGCCCCAGAGCAGTATAACGGTCCTGTCCTCAGCCATCTTCAGCAAAGCAGTCCAGATCATCCCGTCCCCACCTAAGGGTAAACTGCCCATTCTGCCCTACTCTAAAATGAAGAGCGCCCTGATCCCAGCTGCAAAGCTTAGCAATttgtccccagagaagaagggTTTCTCTAGCCAGACAGGACTCACCAGCCCCTTAGATCCTACATCCAAGCCCCTCGAGACAGCTGAAGCCTTGGGTCACAACCAGGTGCCAAACTCCACTCTCCAGCCCCAGGCAAAGACCACACTCCTCCCTGTGTTGGGAACCCTCCAGAAACCACCTGGGAAGAAGAGGGGGCGGAAGAGAAAGACGATGGAGGACATCTTGGCATTTGAGGCTAGAAAGAAGAGGTCTTTGTCTTTCTTCAGTAGAAGGGTCCCAGAGAAACCGCCAGCAGTTGTCCCAGGCTCCAAACAAAAGGAAGTTGATATTTCAAAGAAGTACCGCAGCATCCGACCCAAGCCTATGTTGGTAATGGAGACGGTTCCCCAACTGGTTAGTTTGCCTGCCATTACCCCAGATGGCCAAGAACAGGAGCTCGTACTTGGTCATCAGCTCCCCACCACTACCACAACCAAGACCCTGGACTGCCCTCCCCAACCATCCCCAGTAACCCTCCACCTGAGAGGCGCCTCCCATCCAAGAGTGTTCATAGGCAGCCGTCCGCTCCACCGTTGCCCCACCTGCAGCCGCTGTTTCCAGTTCAAGCATCACCTCCAGAGCCATATGAACAGTCACACCAACAGCCGGCCCTACGTCTGCCCGGTCTGCCGCAAAGCGTACGCCCACTCCGGCAGCTTGAGCACCCACATGAAGCTTCACCACTCTGAGGTACGCCCACGTCGGTCTCTGTGCTGCGAGTTCTGCGAGAAGGCCTTTGGCTATGTTGGGGTTTACTTCAGTCACCTGAGAGAGGTCCACAAGGTGGTGCTGACCGTGGAGCCTTCCATCAGCCATCACGAGGATCGCCTATCTGTGGAGAGGGCCAACTCCCCAGAGCCATCAGATGAGCAGGATCGGGAAGACCCTGTAGAGCTGCAGATTAAATGCGGCCGCTGCCAGGCCATCACTCCGACCTTTGCCGACATGAAGATGCACTTGCTGTATGTGCACGGGGAGGAGGTCCAGGTTCCGCTTCACAAGGGCCAGGCACTGCGCGGCGGCCGCGAGGCCGAGAACGAGCTGGTAAAGCACGCCGCCCACTACTGGCGGCAGCTCAACGAGAAGCGCAACCTGGTCAGGTGCGGCAGCTGCGACGAGGAGTTCTTCTCCTTCTCCAAGCTTAAGAGACACATCATGTCCCACCACCAtagaagggagggggaggacaGCGGGGCCCTCGCATCACCAGATAGCGGCAGAGGCCACGGGGTCCTTGCAGCAGGTGCAGCCTTTAACTGTGTGCTTTGCAGTGAGATATTGGACACTAAAGAGGGGGTTATGGAGCACTGGAGGAGTCGCCACCACTGTGAGCAGCCCGGCCTTCTGTGGGATGCACTGAGCTCCTACTCTGGCCAGGAAGAGGGTGAAGCGGACGGGGATCTGGACACTCCTGCTCCAAGCCCACACTATCCAGCCTAGCCCTCGAATGGGCATGGAGCCCTTCACTGTggcacctcacacacacactcagtactAACAATCAGCAGCACAGGGATGCAGAGTTTCCCTGATGTTTTTTATCACTAGTTTCATCTTTCACCAGTTGAGGCATTTGACCTGGTTCAaatgaaaatagaaaaagaatatCAAGCCAATGGTGAAAATTGATCTTTGTGTTACAGTTCATAAGGGATACTCTCTCTAGGTCAGAGAATTCAGTTTTATAAACGATATTATTTTCCATGTTATTTTGATTGCACTGttctgtttttggacattttgtttGTAGGTATGTATTTAATATCCTGTTGGATAATTTTTCTACTGCTTATTTAAATCTTATTAAAATGGTTATTTATAACCTACCTGACGCATTAATGTTGGTAAAGGGTCATTTCACCTAAATCCTTAGCTCTTATGGTATCTAGCCATGCAGATCATTTGGTTTTTTGTGCTGAGTTTTTGAGATATCTGCGCTGAGATTTCTGCCTTCACCCCAatgaaaattacatttcaaaAGTTTAATGACTACGTCTCATTGCGGAAACTATCGGAAGACGATCCAGAggaaacaaattttttttttgtgtaatacCGTGAACACCGCAAACAAaattccattccactccatttcATAAAGTTGGAGTCAGAAATCCTAAAAGATCTTCTtcattttgactaaaactaCCAAATGTGCATGGCTAGATACCACTATTGGAGAAAATAAAGTTTCTAATTTGGGAGAAATGTAAAATCTTATAACAAGGGCACACTGTCTACTGTCACACTGGCTGACAATGTATCTATTGGCCTTGGATTATTACAGGTAAAAATGAATCGGTATGAATACGCAATCCTTTGATGTAATATTGTTCCTGTAACGGAAAAATCAATATTTCAGTTATGACTTTAACTTTCACAGTCCGATTAAGGGCAGTATCGGGGTCCTCTGTCAATCCGGACCCATGAAGGAACACTCTTAACCAGCACCCAAGTGACATCCTTGTGGCCTTCTGAAAAGAAATCGGTGTTCATGCGTAGTGTGGCTTACCGTCAGTATGGTCCTCTGTAGGCCAAGTTCTATCTCCTTGACTTGTTGATTAATGCCTACTTGTCTATTATGTGATATGCCAAGGGTCTATTTACACTAGTGATTGTAAAAGTGAGTTTTGCATTGAAGCTTTTTAACCACTGACAGAATAATTTTTGGTGACTTAGTAAATACGTAAAGAAAATGATCGAATTGCCTACCTGTTGTTGCCAGCTCATGTACGCACCTGTGGAATTGTGTGCACCCAGACTCTATTATTAGAGTTAATATAAACTGTTGTCAAGTCCAGAAAATATGCTATTTTATACTAGATTAATACAGAGGTCTGTTAGTATAGTCCTGCTTGTTGTTGGTCCTTCAAGATTTATGTTTGATTCTTCCGAGTTGGGGGGTGCTTAACGTCTTGTTTTTTGATGGGAGGCCATTACTACATGGCAAGTATCTCTGCTAACATTTGTCTGTGGTTATCTTTCatatgaagtaaaaaaaaaaaaaaaacaacatcacaGGGTCAAGTGAATGTACCTGAATGTTTTCAAAACCCTACCAAAAgtatatatatgctatatagACTTATTCCATAGATagaatatatagatatattgagaaaaaaaaaatatatatttacatagagTAACTTGTGAATCAGCTGCTGTGTTCTGTCATAGTGGAGGAGGGAAACAAGAGATGAATATATAATTGCCAACACTGGCAACAAAAGCCATGTAGAGCTGTCTTTATGTGTCGGACACAAAATGCAGGACTGTGAATGAAGGGCAAAGCACTGGTGTGTACGTGTCGCACTGAGCGGGTGATCTACGGTATAGTGCACTACTGTTTATTGAATACCATGTTTAAGTGTTCATCGGTGAAGTGTCCTTTGTTTTCAAGCCCTCGACACAAACCAGGAAGTGACAGAATTTAGGGCCAGACTCTTCTTTCCTCAGTTAGATGAGAAACATACTTGTGACCGTCAGCACAAGTCGGAAAGTGAAAAATCCCACTTTAGGTGATGTGATGTGTTTGACTCACTTAATATGTTGACTGTGTCTACAAATGAAGTGTTTGTGCTCGTGACTGTTTGTGTACCTGAAGAACCCGATGTTTAAGAGAATAAAGATATGCTTTGTTGAGGA

Function

symbol description
znf438 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human ZNF438 (zinc finger protein 438).

NR:

description
PREDICTED: zinc finger protein 438

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039790273.1 True 4962 mRNA 0.48 4 2878512 2935569

Neighbor

gene id symbol gene type direction distance location
arhgap12b arhgap12 coding upstream 105826 2679636 ~ 2772686 (+)
LOC120552716 kif5b coding upstream 205774 2624686 ~ 2672738 (+)
gfod1 gfod1,LOC100711398,LOC102233768,LOC102788772 coding upstream 262611 2567665 ~ 2615901 (+)
slc12a7b LOC103361595 coding upstream 319886 2458659 ~ 2558626 (+)
aoc1 aoc1,LOC102789916 coding upstream 439913 2426160 ~ 2438599 (+)
jcada kiaa1462 coding downstream 347026 3282595 ~ 3306837 (+)
abcd3a abcd3 coding downstream 466399 3401968 ~ 3433621 (+)
steap2 steap2 coding downstream 634703 3570272 ~ 3638033 (+)
arhgef4 arhgef4 coding downstream 778742 3714311 ~ 3873302 (+)
LOC120552545 NA coding downstream 965382 3900951 ~ 3935126 (+)
G217482 NA non-coding upstream 204762 2671938 ~ 2673750 (+)
G217489 NA non-coding upstream 314634 2563663 ~ 2563878 (+)
LOC120552009 NA non-coding upstream 462046 2409885 ~ 2416466 (+)
LOC120552006 NA non-coding upstream 523156 2351351 ~ 2355356 (+)
G217459 NA non-coding upstream 565891 2305543 ~ 2312621 (+)
G217604 NA non-coding downstream 66281 3001850 ~ 3003104 (+)
G217608 NA non-coding downstream 73620 3009189 ~ 3011592 (+)
G217615 NA non-coding downstream 93101 3028670 ~ 3029018 (+)
G217618 NA non-coding downstream 109823 3045392 ~ 3047425 (+)
LOC120552406 NA non-coding downstream 219616 3155185 ~ 3163076 (+)
G217377 NA other upstream 1203112 1669162 ~ 1675400 (+)
zcchc2 zcchc2 other upstream 1373297 1462750 ~ 1505215 (+)
G217606 svil other downstream 70714 3006283 ~ 3021642 (+)
LOC120552392 mtpap other downstream 285046 3220615 ~ 3233822 (+)
G217723 cnn3 other downstream 559881 3495450 ~ 3543785 (+)
chchd7 chchd7,LOC102799933 other downstream 734851 3670420 ~ 3704375 (+)
ppp1r17 NA other downstream 1320479 4256048 ~ 4261598 (+)

Expression


Co-expression Network