LOC120552351 (LOC103377033,LOC108245190,LOC101477525)


Basic Information

Item Value
gene id LOC120552351
gene name LOC103377033,LOC108245190,LOC101477525
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 6626589 ~ 6639687 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039790344.1
AGGCTTCTTACTGTCAAACTATCTTCTGCGAGCTGTAAACAAGAACGCAAGTTAGTTGGGAACGTCGTCTTAATCAGGCTGTTGTAGCTGTTTATTGAGAGTAACACATCTCATTGTACAAGGAAAATGGAAGACGATACACTAACGACTCTGAAAATATTGATAATAGGAGAGAGTGGTGTTGGGAAGTCCAGCCTGCTCTTGAGATTCACAGATGACACATTTGACCCAGAGCAGGCAGCGACAATAGGTGTGGACTTCAAAGTGAAGACCATTACTGTGGACGGTAACAAGGCAAAGCTGGCAATATGGGACACTGCAGGACAGGAGCGCTTCCGAACCCTGACGCCTAGCTACTACCGCGGTGCCCAGGGAGTCATCCTGGTGTACGATGTCACACGACGGGAAACCTTTGCCAAGCTTGACAACTGGCTCAACGAGCTGGAGACGTACTGTACAAGGAACGACCTCGTGAAAATGCTCGTGGGAAATAAAATCGATAAGGAAAACCACGAGCTAGACAGGGCCGAAGGGCTGAAGTTCGCACGAAAACATTCCATGCTTTTTATAGAGGCGAGTGCCAAGACCAGAGACGGTGTTCAGTGTGCATTTGAGGAGCTGGTGGAGAAGATAATCCAGACGCCCGGCTTATGGCAGAGCGAGAGCCACGGCCGAGGAGTCCAGCTCAGCGACGAGGACGCCGGAGGTGGAGGCTGCGGTGGCTACTGCTCCCTGGTCtagacaacacacaaacacacgcgctCAAAAGCATGTGTTCAAACATACATGTGAATACCACACACAGTGccacacaagcatacacacaaacacacttgaaagaacagcccccctcccctcccactGGGGTTCCTGAGCTGAGCTTCCTCATCAGACATGAAGGCAGTGGAGGGGAGGTCCGcctgtctccccctccccccgGCTCAGCTGTAAGGGTTGACCGTCCgtccacacagacacaaatttttttttgcacactttCTAATACCAACGCTGTGCTAAAATGCAAATGCAACTCAGCCTTCCTCTTAATGGAATTTGAGTAagtttttctctcctctgttttgTTATGAGTTCCAGTTTTCTTGCAGTTCTGGGTCCTCGGTCAAAATATAAACCATTCTCACTTCGTACATATGATTTTAAATATAGCAGTGCAGTGAAATGAGTGCAAAAGTACAAACCAAAGGTCGTCGGGCATATggctaaatgtctgaaatgtgaGAATGAGAATTGGGAAAGTGTTTTGACCAAGGGTTCTCTTTTGTCTCCGACATGCTTATTGTCCTCAGAGCACCTTGCCTCAGTAAGCACATCTGTCTCAATGCAGGGCCCACTTTTCTCCAGTGTGTCTCTTTCCCTCTGCTCTGCCCTGTGCTTGGTCCTGATCCTGCCCCCGGACTCTGTGGACATTATGCTGCTTATGGAGAAGCTTATCAAGCCAAGTCATCTTGTATTCCATCTCACCACTCCCAGTCAAAGGCTTGGATCATGTGTCTCTGTTTACCACACAACTGCCTCTTTTCTTCAAAATATAATAGAGTTACCAACTGTCTGGAATGACGTTTTACTGCTTTTATTGACTTGGACTTCAAACTTTTGGTGTGTGTTGAAGAGTGCATAAATCAAAGAGATTGGCACCAGCAAGCTTTCCACTGGGTGCCGAAGAAGAGGGAACCTCTTAAAATTGCACGCCTTTGTTGTAACGAGTTGCTTTAATGGAGTGCGACCTACTGGCACTCCCTCACTCAGACAGATAATATCAGTAATAACACTAGCACTACCATGGGTTTTCATATAGATCcctctgactggacagagacAAAGGAAAAGTGTTCAATATTAGACAGGGCAGTGAGTCATAAGGGTGTTTCCACTGAATTTGGAAAATCAAAGAAAAAGCTGTGCGCTCCACATTGCTGATGGATTTAACAGCAGTCCTATCTCTGTATTGGTATCCGAGAAGCAGTTAAAAATGTACTGTACCCCTGACCTCTGACCATGTTTGTAGTGTTCAAGTGCTAGTGTGTGTTCTAAGatattctgggaaatgtagttcTGAGAGTTTGATCTTGTAAAAGGGATGGTGAAAACTACATGGATTCAAGCATGTCTTATCacaaatggattttttttttaaatctctttttAATTGCATGGGAAACTCTGCGTgccatttatttgtttgtttgtccagTGAATGGCCTTCAGGGGCTATTTACTATAAACACTAAATCATAtttagctggaaaaaaaaacattgcataCCATTTGAATTTAATGGTataattaaacaaaaaggaagTAGGCTTTGACTTATTTAACTGTAGAGctgtctttttctgtcttcAGAAATCTGTTGAAACATGTATACCTTGTAAATTGTGTATTTTAGGAATTTGGTGGGAGAATTCCTGAATGAATTGTAAAGCTGAATGTATACATATTTCACAAACCGCCCTATgtattaaactaaataaaactctTTTTTTAAGTGAA

Function

NR:

description
PREDICTED: ras-related protein Rab-18

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07910 RAB18; Ras-related protein Rab-18

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039790344.1 True 2517 mRNA 0.44 7 6626589 6639687

Neighbor

gene id symbol gene type direction distance location
waca wac coding downstream 349285 6247422 ~ 6277304 (-)
bambia bambi,LOC102792619 coding downstream 385618 6235855 ~ 6240971 (-)
LOC120552249 hecw1 coding downstream 562539 5971194 ~ 6064050 (-)
LOC120552212 LOC102200884,LOC107389439,LOC103367775 coding downstream 778192 5847441 ~ 5848397 (-)
LOC120552519 LOC104935677,LOC103364245 coding downstream 897333 5724235 ~ 5729256 (-)
itgb1a itgb1,LOC104924090 coding upstream 1031 6640718 ~ 6683933 (-)
nrp1a nrp1 coding upstream 57561 6697248 ~ 6762956 (-)
LOC120552354 pard3 coding upstream 313142 6952829 ~ 7335452 (-)
trnaw-cca_32 NA coding upstream 661382 7301069 ~ 7301140 (-)
trnaw-cca_33 NA coding upstream 663009 7302696 ~ 7302767 (-)
G218199 NA non-coding downstream 171623 6426008 ~ 6454966 (-)
G218177 NA non-coding downstream 372613 6253146 ~ 6253976 (-)
G218176 NA non-coding downstream 397596 6228775 ~ 6228993 (-)
G218166 NA non-coding downstream 615524 6010337 ~ 6011065 (-)
G218165 NA non-coding downstream 636659 5988889 ~ 5989930 (-)
G218327 NA non-coding upstream 941870 7581557 ~ 7581756 (-)
LOC120552501 NA non-coding upstream 952010 7591697 ~ 7593836 (-)
G218332 NA non-coding upstream 993884 7633571 ~ 7634213 (-)
G218335 NA non-coding upstream 1040463 7680150 ~ 7680411 (-)
G218347 NA non-coding upstream 1100586 7740273 ~ 7740524 (-)
G218085 LOC107687935 other downstream 926013 5700229 ~ 5700576 (-)
G218019 NA other downstream 1589885 5027505 ~ 5036704 (-)
G217837 NA other downstream 2685260 3936010 ~ 3941329 (-)
G217780 chchd7,LOC102799933 other downstream 2922232 3692952 ~ 3704357 (-)
f3a NA other downstream 3170545 3437802 ~ 3456044 (-)
G218453 adarb2 other upstream 1555242 8194929 ~ 8195879 (-)
G218471 NA other upstream 1790777 8430464 ~ 8430930 (-)
prkdc prkdc other upstream 2158094 8797781 ~ 8851726 (-)
LOC120551928 LOC104943218,LOC103369878,LOC100710535,LOC102301415,LOC101469805 other upstream 2317722 8957409 ~ 8970638 (-)
cngb3.1 LOC103363254,LOC102786718,LOC108428960,LOC104948783 other upstream 3193775 9833462 ~ 9848241 (-)

Expression


Co-expression Network