LOC120552400


Basic Information

Item Value
gene id LOC120552400
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 19069163 ~ 19070616 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039790451.1
AAATAACCACACCTGATGAGAACTCGTTATTGCTAATTGATTTCAGATGGGGTAACCACAATTGGTCATTAGATATAAGTGAGGGTCTGAACACTGGCAATTTCTTTCAACATGGACCAGGATAGACAGCAAGGAATTGGAAGAGCTCGTGGACGAGGGATCCGTCAGAGAGGTGGGCATGGGGCCCATCAAAGGGTTGGTCATCGGAGAGGGGGAGGCAGAACTGTTGTCTCTAATGAAGTCCGGGCCATCGTCGTTGATCATGTGGTGAACCGAGGCCTTACTATGGCAGAAGCTGCCAGATTAGTTGAGCCAAATCTAAAAAGATCAACTGTCAATTCTATCATCCGAACCTTTCGCCAAGAAAACCGAATTAACAGAAAACCCCATAGTGGTGGTCGTGGCCGTGTGCTGACCGACCAGCAAGAGTTGGCAGTGGTGGAAATGGTGAGGGCCAGGAATGATATACGGCTGTCAGAAATAAAGCAGGAAATTGAGGAGAACAATGACACCTTTGCCAATGTGGCATCCATCAGCCTACCAACAGTAGCCCGCCTTTTAAAGCGGCACCAGGtatcaatgaaacacatttaccTGGTGCCTTTTGAGAGAAACAATGACCGGGTGAAACAACTAAGGGCTGAgtatgttcagAGGGTTATGGTGCTTGACGCTGACGTAACATTATTGGCCAACGGGCCACTGTCCAAGTGCCTGGACAACGTGGAGGAAACGTCTCTATGTGCGCAGCTATCTCTGAAGATGGTGTCCTAGGACGTAGGCCATTACTTGGCTCCTATAATGCTGCACATCTTATTGAGTTTCTCAATGAAATTGAGCTGGCCTGTCAAGGTGAAGGGGTCACATATGTAATTGTGTGGGACAATGTCAGTTTTCACCACGCAGAGGTAGTTCAAGCATGGTTTCAGACCCATCCTCGATTCATGACCCTCTACCTGCCTCCATACTCTCCTTTCCTCAACCCTATTGAGGAATTTTTTTCagcatggaggtggaaggtcTATGATCGC
>XM_039790453.1
CTTTCAAAATGCAATGCTCACAATACTTTTGATATGCTTCTCATCTGATTTGTGTAAATACATTTGACCAACACTTAATCCAACTGATCTTAATGGTTAATCACTTAACCATTTGATGGGGTAACCACAATTGGTCATTAGATATAAGTGAGGGTCTGAACACTGGCAATTTCTTTCAACATGGACCAGGATAGACAGCAAGGAATTGGAAGAGCTCGTGGACGAGGGATCCGTCAGAGAGGTGGGCATGGGGCCCATCAAAGGGTTGGTCATCGGAGAGGGGGAGGCAGAACTGTTGTCTCTAATGAAGTCCGGGCCATCGTCGTTGATCATGTGGTGAACCGAGGCCTTACTATGGCAGAAGCTGCCAGATTAGTTGAGCCAAATCTAAAAAGATCAACTGTCAATTCTATCATCCGAACCTTTCGCCAAGAAAACCGAATTAACAGAAAACCCCATAGTGGTGGTCGTGGCCGTGTGCTGACCGACCAGCAAGAGTTGGCAGTGGTGGAAATGGTGAGGGCCAGGAATGATATACGGCTGTCAGAAATAAAGCAGGAAATTGAGGAGAACAATGACACCTTTGCCAATGTGGCATCCATCAGCCTACCAACAGTAGCCCGCCTTTTAAAGCGGCACCAGGtatcaatgaaacacatttaccTGGTGCCTTTTGAGAGAAACAATGACCGGGTGAAACAACTAAGGGCTGAgtatgttcagAGGGTTATGGTGCTTGACGCTGACGTAACATTATTGGCCAACGGGCCACTGTCCAAGTGCCTGGACAACGTGGAGGAAACGTCTCTATGTGCGCAGCTATCTCTGAAGATGGTGTCCTAGGACGTAGGCCATTACTTGGCTCCTATAATGCTGCACATCTTATTGAGTTTCTCAATGAAATTGAGCTGGCCTGTCAAGGTGAAGGGGTCACATATGTAATTGTGTGGGACAATGTCAGTTTTCACCACGCAGAGGTAGTTCAAGCATGGTTTCAGACCCATCCTCGATTCATGACCCTCTACCTGCCTCCATACTCTCCTTTCCTCAACCCTATTGAGGAATTTTTTTCagcatggaggtggaaggtcTATGATCGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039790451.1 False 1031 mRNA 0.48 3 19069163 19070417
XM_039790453.1 True 1100 mRNA 0.47 4 19069163 19070616

Neighbor

gene id symbol gene type direction distance location
LOC120552750 oprk1,LOC104949654,LOC103363868 coding downstream 3587 19059707 ~ 19065576 (-)
chmp5b chmp5,LOC104949656,LOC108230516 coding downstream 11087 19054260 ~ 19058076 (-)
myom1b myom1,LOC100698284,LOC102794243 coding downstream 32330 19006643 ~ 19036833 (-)
LOC120552316 lpin2 coding downstream 63998 18989181 ~ 19005165 (-)
LOC120552191 yes1 coding downstream 215547 18831587 ~ 18853616 (-)
lypla1 lypla1 coding upstream 41580 19112196 ~ 19118982 (-)
LOC120552661 esco1,LOC102306999,LOC105019393,LOC107732058,LOC107599690 coding upstream 111434 19182050 ~ 19195523 (-)
vps41 vps41 coding upstream 125967 19196583 ~ 19213652 (-)
ankha ankh coding upstream 244967 19315583 ~ 19330554 (-)
fam49bb fam49b,LOC104954579,LOC105915818,LOC103377397,LOC107085391 coding upstream 405264 19475880 ~ 19514037 (-)
G220972 NA non-coding downstream 25947 19040265 ~ 19043216 (-)
G220893 NA non-coding downstream 239178 18829751 ~ 18829985 (-)
G220888 NA non-coding downstream 252785 18815906 ~ 18816378 (-)
G220860 NA non-coding downstream 328547 18740417 ~ 18740616 (-)
G220839 zfand1 non-coding downstream 445778 18622691 ~ 18623385 (-)
LOC120552156 NA non-coding upstream 246038 19316654 ~ 19317227 (-)
G221086 NA non-coding upstream 301975 19372591 ~ 19374516 (-)
G221088 NA non-coding upstream 366350 19436966 ~ 19439539 (-)
G221090 NA non-coding upstream 375429 19446045 ~ 19446294 (-)
G221095 LOC102309907,LOC101472733,LOC102788342,LOC101061645,LOC104929597 non-coding upstream 446756 19517372 ~ 19544392 (-)
mettl4 mettl4 other downstream 119668 18938913 ~ 18949495 (-)
LOC120552352 colec12,LOC102798044 other downstream 258219 18772977 ~ 18810944 (-)
G220833 NA other downstream 371193 18610236 ~ 18697970 (-)
si:ch73-174h16.4 LOC103364270,LOC104947970 other downstream 585387 18426762 ~ 18483776 (-)
G220412 csrnp1,LOC104937158,LOC102793366 other downstream 2193863 16874649 ~ 16875300 (-)
G221048 ankh other upstream 244975 19315591 ~ 19326894 (-)
LOC120552536 fbxl7 other upstream 1764562 20835178 ~ 20862688 (-)
rbis LOC101064519,LOC103367294,LOC102312013 other upstream 2147064 21217680 ~ 21221667 (-)
tfr1b NA other upstream 2919401 21990017 ~ 22011086 (-)
LOC120552473 NA other upstream 3043766 22114382 ~ 22120611 (-)

Expression


Co-expression Network