LOC120552407 (cpne3,LOC104924704,LOC102292005,LOC108248831)


Basic Information

Item Value
gene id LOC120552407
gene name cpne3,LOC104924704,LOC102292005,LOC108248831
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 8334787 ~ 8347251 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039790463.1
AAGGCAATGCAGAGTAGACAGAGCAGCCAAGCAAAGTCGCGATACTTTTGAAAGGGCGATACCATCCTGCTAcagtgtaacgttaacgtttcgAGCTAGCTACTGACACCGCCTCACAAAGTATTTTCTAGTTTTGAGTCCTGCATCGCGTCCACACACTTTTAACGCTTGTTACCACACAGACATGGCTGCCCAGTGTGTAACCAAGGTGGAGCTGACTGTGTCCTGTGAGAATCTTCTGGACAAAGACATCGGCTCAAAGTCCGACCCGCTGTGTGTCCTGTTAATGAGCAGCTCTGATTCCCAGTGGTATGAGGTGGGGCGCACTGAGAAAGTCCAGAATTGCCTCTGCCCAAAGTTTGCAACAAAGTTTGTCGTCGACTACTTCTTTGAAATAGTGCAGAAACTGAAGTTTGGGATTTATGACATCGACAACAAAACTATTGACCTGAGTGACGATGACTTCCTGGGGCAACTGGAGTGCACCTTGGGCCAGGTTGTGTCCAGTAAAAAACTGACCCGGCCGCTTGTCTTGAAGAACAATTCCCCTGCAGGAAAAGGGACCATCACAATCAGTGCAGAAGAAATAAAAGATAACCGAGTGGCAAATTTTGAAGTTGAAGCAAGGAAACTAGATAACAAGGATTTCTTTGGGAAGTCCGACCCTTACCTGGAATTCTACAAGCAGACAGCGACTGGATGGCAGCTGGCTCACAGGACCGAGGTGGTGAACAACAACTTGAATCCAACATGGAAACCCTTTCGAATTCCCCTGCAgtctctctgtggaggagaCATGGACACACCTATAAAAGTTGAGTGTTATGATTATGACAACGATGGCTCACATGATCTTATTGGATCCTTTGAGACAACAATGACGCGCTTCCAACAAGCATCACGAACCTCTccgGCAGAGTTTGAATGTATCAACAGtaaaaagaaacagaagaagaaaggcTACAAGAACTCTGGTGTTGTGAGCGTGAAGCTATGCGAGgtGGTGAAGGAGTATACCTTCCTGGATTATATTATGGGAGGCTGTCAAATCAACTTCACTGTGGCTATTGACTTCACAGGCTCCAACGGGGATCCCAAGTCTCCTCAGTCTCTGCATTACATTAGTCCTCAGGGCGTTAACGAATACCTCTCTGCTATCTGGTCTGTTGGCAATGTCATCCAGGACTATGACAGTGACAAGATGTTTCCTGCCTTTGGCTTTGGAGCCCAAATCCCTCCCACATGGCAGGTTTCCCATGAGTTTCCCCTGAATTTCAACCCAGCAAATCCATTTTGTACAGGCATTCAAGGTGTGGTGGAGGCATACAGAGTGTGTCTGCCCCAGGTCAAACTCTACGGTCCTACCAACTTCTCCCCTATCATCAACCACGTAGCCTGCTTTGCTAAGCAAGCAATCCAGCAGACCACTGCATCGCAATACTTTGTTCTGCTGATCATCACTGACGGAGTGATCACCGACATGGATGATACACGCAGTGCCATCGTCAACGCCTCTCGTCTCCCCATGTCCATCATCATTGTTGGAGTAGGGGGGGCGGACTTCAGTGCCATGGAGTTCCTGGATGGAGACAGTGGACGTCTGCGCTCTCAGACTGGCGAGACTGCCATGCGAGACATTGTCCAGTTTGTGCCATTCAGGCAGTTCCAAAATGGTCCTCGAGAAGCACTGGCAAAGAGTGTGTTGGCAGAAGTACCAGGTCAGCTGGTGGACTTTTACACTACAATGAAGCTGAGTCCACCCACATCCATTCCCGCACCAAACTCTGCACCAAATCCTGTACCAAACCCTGCGGGGACCATCTGATACTACAAGAAGGAAACCAGACATACAGTAGACCTAATTTCATCTCCTGCAGATATAAAGCAGATCCCAGCATAATCTCATCACTCAATTAGACAAATGTCCTTCCTAGCAGCATGCAGCTTAGTCAAAGATAGCCACCCAAACCACACACAATACAGCAAAAGTAAGCACTCCACACTATTGACCAACGATATTAATATTGATATGTGCTCATTTTAGCTTTTATTTAGTGCTACTGCAACCTAAAAATAGACAACAAACTGATCATTCCATCCGTCGTTTTTGATAGATTAAGTTGATAGGCAGGGAATTGCACTTTTAATAatagttttttgaaaaaaagcatttgAGATAAACAAGGATGCATTTGTTGTTTCTGTAGTACTAACTGAAACGAGATACAGTAAATCAAAAATAATTGTCATTGCAGGAACACTGCACTGCTTCTGCtggttttttcttttaatgcatCCTAGGAGTGTGCAGTTTATTTTTATGCCAACATGAAGTTACAATAGCTATGTAAAAGACTTTTACACAAGATaacaaagatgatttttttaatcatgGCACCAATAAATGGTGAGGTGACCCATATTGTCacttagtttatgacaaatggtTTCGGCTGCGCTtactaacatgatgtcattgtgctaaccgggcatcgttagcctttacaacagagccgcttcactacACTTCTTATATAgtgtttcattacagagttctctgttgatatGTGTTTGTCACTGTGTGCTCGCGGTGGGAAATGAATGTAAACAGAGCAGTGTGCCAGAAATGTAATACGCCATGACGTAGctccccttcaaggccaggctaatGTTAGAGGttcctctagtggacagaatgtgtaacaacaaccacatgcttatagcGGCATTGACAATACATAAGCCTGAATAGCATTTGAGCATTAATATTCAACTATTTGAatatcaaaaaaataatatttgaatagtATTACAGAAGAAGACCGACAGCTCTACCCCATATATGATGTTTACATCCTCAGTGAAAGCATAAGTAATGGAGGAAGCATAATTATGTTCATGTAGTCAAGTAGCGTTGTTGCTGTTTTGGCACATAGAGAATTTATTTGCATTAATGTTTGATGCACATGCTTTCCTATGCACTTACCTATAGTAATGTTTTACTCAATGAAATGCCAAATTCTGTGTTTGGGTAATAAACTCAGAGCTATTTATACCCTAAGTATAAATCCGTAATCTTGGAATAACTAGAAAGTCTCATTGTAGTAGTGTCAGATGTGCTTGTTTTGTGCCAGTATTATCACTTGTGTATGTTTTACTGTGGTCTACCATTGTGCCAGTTACTTTTGGTTACTTTCCCTTCAAAGACACCGTTGGGTAGTTCCCTGGACAAGGACTAACAAGTCCTAGACTAAACACGTTTTTATTCCAATGATATGGCCATTGACTTAATCTCTGTTCGGGAAACTGACCtcttatacatacatacatgagtATTAAACATGCTTTCACCATAGAAACTACAGTACTGCTTATTGAAATCTATGCATGTTTAGTGcaagtgtgtttatttttttttattgtttttatatggTTGTACAAGACAAGCTGTAAAACATGTCTCACATATCCGCTTTAGTGCTCAGATAGAAATGGGCAATGTGCCTTATTGTCAACATAAAGTACAACAAGCTTGCTAATAAAACAAATCttaataaatacaaa
>XM_039790464.1
CAAGGCAATGCAGAGTAGACAGAGCAGCCAAGCAAAGTCGCGATACTTTTGAAAGGGCGATACCATCCTGCTAcagtgtaacgttaacgtttcgAGCTAGCTACTGACACCGCCTCACAAAGTATTTTCTAGTTTTGAGTCCTGCATCGCGTCCACACACTTTTAACGCTTGTTACCACACAGACATGGCTGCCCAGTGTGTAACCAAGGTGGAGCTGACTGTGTCCTGTGAGAATCTTCTGGACAAAGACATCGGCTCAAAGTCCGACCCGCTGTGTGTCCTGTTAATGAGCAGCTCTGATTCCCAGTGGTATGAGGTGGGGCGCACTGAGAAAGTCCAGAATTGCCTCTGCCCAAAGTTTGCAACAAAGTTTGTCGTCGACTACTTCTTTGAAATAGTGCAGAAACTGAAGTTTGGGATTTATGACATCGACAACAAAACTATTGACCTGAGTGACGATGACTTCCTGGGGCAACTGGAGTGCACCTTGGGCCAGGTTGTGTCCAGTAAAAAACTGACCCGGCCGCTTGTCTTGAAGAACAATTCCCCTGCAGGAAAAGGGACCATCACAATCAGTGCAGAAGAAATAAAAGATAACCGAGTGGCAAATTTTGAAGTTGAAGCAAGGAAACTAGATAACAAGGATTTCTTTGGGAAGTCCGACCCTTACCTGGAATTCTACAAGCAGACAGCGACTGGATGGCAGCTGGCTCACAGGACCGAGGTGGTGAACAACAACTTGAATCCAACATGGAAACCCTTTCGAATTCCCCTGCAgtctctctgtggaggagaCATGGACACACCTATAAAAGTTGAGTGTTATGATTATGACAACGATGGCTCACATGATCTTATTGGATCCTTTGAGACAACAATGACGCGCTTCCAACAAGCATCACGAACCTCTccgGCAGAGTTTGAATGTATCAACAGtaaaaagaaacagaagaagaaaggcTACAAGAACTCTGGTGTTGTGAGCGTGAAGCTATGCGAGgtGGTGAAGGAGTATACCTTCCTGGATTATATTATGGGAGGCTGTCAAATCAACTTCACTGTGGCTATTGACTTCACAGGCTCCAACGGGGATCCCAAGTCTCCTCAGTCTCTGCATTACATTAGTCCTCAGGGCGTTAACGAATACCTCTCTGCTATCTGGTCTGTTGGCAATGTCATCCAGGACTATGACAGTGACAAGATGTTTCCTGCCTTTGGCTTTGGAGCCCAAATCCCTCCCACATGGCAGGTTTCCCATGAGTTTCCCCTGAATTTCAACCCAGCAAATCCATTTTGTACAGGCATTCAAGGTGTGGTGGAGGCATACAGAGTGTGTCTGCCCCAGGTCAAACTCTACGGTCCTACCAACTTCTCCCCTATCATCAACCACGTAGCCTGCTTTGCTAAGCAAGCAATCCAGCAGACCACTGCATCGCAATACTTTGTTCTGCTGATCATCACTGACGGAGTGATCACCGACATGGATGATACACGCAGTGCCATCGTCAACGCCTCTCGTCTCCCCATGTCCATCATCATTGTTGGAGTAGGGGGGGCGGACTTCAGTGCCATGGAGTTCCTGGATGGAGACAGTGGACGTCTGCGCTCTCAGACTGGCGAGACTGCCATGCGAGACATTGTCCAGTTTGTGCCATTCAGGCAGTTCCAAAATGCGCCCAGCCAGGCTCTTGCCCAAAGCGTATTGGCCGAGTTACCTCAGCAAGTGGCCTCCTTCTTCAGTTTATTCAAACTGAAGCCTCCCCGTGATCCCAGTCCTTCATAGGGGGTCCTCGAGAAGCACTGGCAAAGAGTGTGTTGGCAGAAGTACCAGGTCAGCTGGTGGACTTTTACACTACAATGAAGCTGAGTCCACCCACATCCATTCCCGCACCAAACTCTGCACCAAATCCTGTACCAAACCC

Function

symbol description
cpne3 Predicted to enable calcium-dependent phospholipid binding activity and receptor tyrosine kinase binding activity. Predicted to be involved in ERBB2 signaling pathway and cellular response to calcium ion. Predicted to be active in plasma membrane. Orthologous to human CPNE3 (copine 3).

NR:

description
PREDICTED: copine-3-like isoform X1

GO: NA

KEGG:

id description
K24524 CPNE1_2_3; copine 1/2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039790463.1 True 3564 mRNA 0.42 16 8334787 8347250
XM_039790464.1 False 1923 mRNA 0.49 17 8336542 8347251

Neighbor

gene id symbol gene type direction distance location
LOC120552408 wdr37,LOC102292542,LOC101470374 coding downstream 7932 8303823 ~ 8326855 (-)
pfkpa LOC101472402,LOC100702375,LOC102201923,LOC102790125,LOC104924699 coding downstream 445788 7861932 ~ 7888999 (-)
fzd8a fzd8,LOC104927254,LOC104956203 coding downstream 892088 7439940 ~ 7442699 (-)
cul2 cul2,LOC102787920 coding downstream 974699 7343067 ~ 7360088 (-)
trnaw-cca_34 NA coding downstream 992892 7341824 ~ 7341895 (-)
LOC120552411 LOC103369038,LOC104941959,LOC108248835 coding upstream 705 8347956 ~ 8361373 (-)
LOC120552414 LOC101468454,LOC102290369,LOC102196333,LOC103482264,LOC106914574 coding upstream 16223 8363474 ~ 8372337 (-)
LOC120552161 wwp1 coding upstream 30768 8378019 ~ 8417988 (-)
snx16 snx16 coding upstream 128876 8476127 ~ 8498014 (-)
LOC120552041 ahrr coding upstream 292290 8639541 ~ 8712753 (-)
G218455 NA non-coding downstream 130267 8203380 ~ 8204520 (-)
G218454 NA non-coding downstream 132151 8202435 ~ 8202636 (-)
G218450 NA non-coding downstream 277689 8056690 ~ 8057098 (-)
G218368 NA non-coding downstream 568390 7763500 ~ 7766397 (-)
LOC120552532 NA non-coding downstream 588355 7744835 ~ 7746432 (-)
G218473 NA non-coding upstream 87798 8435049 ~ 8435949 (-)
G218477 NA non-coding upstream 112247 8459498 ~ 8459710 (-)
G218469 NA non-coding upstream 175699 8522950 ~ 8533544 (-)
G218503 NA non-coding upstream 200522 8547773 ~ 8596404 (-)
G218522 NA non-coding upstream 286849 8634100 ~ 8634685 (-)
G218453 adarb2 other downstream 138908 8194929 ~ 8195879 (-)
G218085 LOC107687935 other downstream 2634211 5700229 ~ 5700576 (-)
G218019 NA other downstream 3298083 5027505 ~ 5036704 (-)
G217837 NA other downstream 4393458 3936010 ~ 3941329 (-)
G217780 chchd7,LOC102799933 other downstream 4630430 3692952 ~ 3704357 (-)
G218471 NA other upstream 83213 8430464 ~ 8430930 (-)
prkdc prkdc other upstream 450530 8797781 ~ 8851726 (-)
LOC120551928 LOC104943218,LOC103369878,LOC100710535,LOC102301415,LOC101469805 other upstream 610158 8957409 ~ 8970638 (-)
cngb3.1 LOC103363254,LOC102786718,LOC108428960,LOC104948783 other upstream 1486211 9833462 ~ 9848241 (-)
G218950 NA other upstream 2230148 10577399 ~ 10669527 (-)

Expression


Co-expression Network