LOC120552411 (LOC103369038,LOC104941959,LOC108248835)


Basic Information

Item Value
gene id LOC120552411
gene name LOC103369038,LOC104941959,LOC108248835
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 8347956 ~ 8361373 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039790474.1
TTTACTGGAAACAGTACACAAGGCACCGCCCACTTAGCTTGCCAGCTCTTCTGTCAACCCTACAAACACcaaaccacagcacacacagctagctaagttagctaacaagtttgcgtgtgtgagtgtgtgtcctcCAGGCTGTGATGGCAGCAGTTGGAACCCCAGCGCCAAAGGTCACTGACTGTGTGACCAAGGTGGCGCTGAGCATCACCTGTGAGAATCTGCTCGACATGGATGCATTCTCAAAGTCTGACCCTCAGTGTGTGCTCTTCATGAACAGCTCAGGGCCTCACTGGTGTGAGATTGGCCGGACAGAGAAAATCGAGAACTGCCTCAATCCCAAGTTTTCCAAGACTTTTGTCGTTGACTACTACTTTGAGATGGTGCAGAAGCTGAGGTTTGAAATATACGACATTGACACCGTCAACTGCAGTCTGCAAGATGCTGACTTCCTGGGAGAAATGGAGTGTACCTTGGGACAGGTTGTGTCCTCAAGGAAACTAACAAGACCACTTGTCATGAAGGACAAGAAACCTGCAGGGAAAGGTACCATCACTATATGTGCCGAAGAAAGAACAGACAACAGAGTGGTGGATTTTGAAGTTGCAGGTAGAAAACTGGATAAAAAGGATTTCTTTGGCAAATCCGACCCGTTCCTGGAATTTTACAAGCCGACAGAAACTGGATGGCAGCTTGCTCACAGGACAGAGGTGATCAAAAATACCCTAAACCCAGTATGGAAACCATTCCGAATCCCACTGCAGTCACTCTGTGGAGGTGACGTCGAGAAATCGataaagGTAGAGTGTTATGACTACAACAGCAGCGGATCTCACGACTTTATTGGATCCTTTGAGACCACACTCTCCCAAATACAGCAGGCAACACAAACATATGCGGCTGAGTTTGAATGCACCAATAGTaagaagaaacagaagaagaaaggatACAAAAACTCTGGTATTATCGTTGTAAAGAAATGCAAGATAGTGAAGGAATATACCTTTCTGGATTACATAATGGGCGGCTGTCAGATTAACTTCACTATTGCTATTGATTTCACAGGCTCCAACGGGGCTCCAAGCTCCCCTCAGTCCCTCCATTACATCAACCCTCAGGGCTATAATGAATACCTGGCAGCTATCTGGGCAGTGGGTAATGTCATCCAGGACTACGACAGTGACAAGATGTTCCCTGCTTTTGGATTCGGAGCCCAGCTTCCTCCTTCATGGCAGGTCTCCCACGAGTTTCCCATCAACTTCAACCCATCAAATCCGTTTTGTGCAGgtaTAGAGGGTGTTGTCCAAGCCTACCAGCAGTGCCTGCCCCAGGTGAAGCTTTACGGTCCCACAAACTTTTCCCCAATCATCAACCACGTAGCCAATTTTGGCCTACAAGCCTTACAGCAGAAGACGGCCTCTCAATACTTTGTTCTGCTGATCATCACTGACGGAGTGATCACAGACATGGATCAGACGCGCAGTGCCATCGTCAACGCCTCTCGTCTGCCCATGTCCATCATCATTGTTGGAGTAGGGGGGGCGGACTTCAGTGCCATGGAGTTCCTGGATGGAGACGATGGAATTTTACGCTCTGCTGTAGGCGAGGCTGCCCTGCGGGACATCGTGCAGTTCGTGCCATTCAGGCAGTTCCAGAATTGTCCACAAGAAATGCTTGCTCAGAGCGTCTTGGCAGAAGTCCCAGGTCAGGTGGTGAGCTTCTTCAGTAAAATGAGTTTAAGTCCACCTCACAGCGACACACCTCTCCCTGACCTCTCAGCATCTGCCCCTTCCAGTGATGTATCCTGAGGACCAACGATTCTCCTCAGAATACCGCATGAGCATGCAACATCTACTCTGGCTGCCATGCTACAATTTATATATACTATGTACCAATAGTATAAAGCCATAGGATACTGATATTGTCAAACATCCTAACATGTAGATAGTTAATGTGACACCAACATATGACTTTATGTGACTCAAGTGCCAGGATTATTAAGACTTTAGGTAACAGTTTGTTAGGTGCACAGTTTGATTTGACTGCACATGGTTCTGCTAATATTGATATTTCCTCCAGCATGTTATCATATTACAATGACCACTTGTTTGTTGGTCCCTGGGAAATGAAGCTGTACACATTTCTATTGAAATCATAGACATTGGACAAAGCAATGACTATATCAGATACAATTCACTAATGTTTACATAATGGATTAATAAGTTTGCCTAAATGCCTTTTGaagattttacaaaaaaaaaaacgtacacTGTGTCCCCGCTGTGGTTTTGTACTTTAGtcagtttctttaaaaaaaaatgtattcagttCCATATTGTTCACTTAGAGTTGAATACGTATAATATTTGAGACAATATTCAATCAGGTTTCCGTGAACGTCCTAGTACTGAGGATTGTTCATTTTCAATTCTTCTGGATTTGAGCTCTGCATTTGACACTGTAGATCACTCAGTATTGGATCGCCTTGAGGCATACTACACCAAAATGTTTTCAATTTTACTTATCAGACACGTGTTTCTGCGTAGCAATGGACAATGGCTCCTCATAACTGGTCTCTTTGACCTgtggtgttccccaaggctccatcCTAGGACACATCATAAACAAACACGAATTCCAGTACcattgttatgcagatgacacaagaTGGTAAATGTATGTCCCAATAAAAACTGGGGGGAAAACTGTCCGATATAAAGTGCTGGATGTCCCAAACCCTTCTCCtgttaaataaaagcaaaatcGGAAATAATTCTCTTCGGTCCCCCAAAGTACAACCCTATTTTACAAAACCATCTTTGATTCTTGTCTTCAAATTTCAAACCTACAGCCAGAAACCTGGATATGGTATTTGACAGCGACctttcttttgaaaaaaagataaacattcagtcatgtttccatcaactAAGGAGCCTCTCAAAGAATAGATTGTTTCTTTATCAGCCTGATCTCAAGAAGctatgcttttatttcttctctcTGTAACTCATTGCATTAAGGTTTGAGCAAAAAAGCCATCAGCTTGCATTTCCGGCCTCtctgggacctttaaagaagtGCTGCTGACCACAGAGTACAGCTGGGACAAAATGCAGCTGCCCGGGCATGATCCTATCAGCCCTTGTTCCTGCCTGAGGGTCTGAGACTTGCACAATCAGTGACATCTATTAAATCCCttctcaatttatttattttttattattatttttcaacaaaaaagcTTTTACTAATTTAATcaaagtttaatttttttacttgtcttatttgtgtatttctgtTATTGTATTTGTCTTATATTATCATTGGATATGGAtatgttattctttttttcattataaTTTTCAATGCAATTTTTGTATTACTTAAAATGTCTGGTTTTATTTGCCTACGTCCTGAACTGTTTTAAACCTGGTTCAACCATTTACTACTTTAACCACTTTGTAACAttgttttgaaaagtgctttataaataaagtttattgttatattatt
>XM_039790475.1
TTACTGGAAACAGTACACAAGGCACCGCCCACTTAGCTTGCCAGCTCTTCTGTCAACCCTACAAACACcaaaccacagcacacacagctagctaagttagctaacaagtttgcgtgtgtgagtgtgtgtcctcCAGGCTGTGATGGCAGCAGTTGGAACCCCAGCGCCAAAGGTCACTGACTGTGTGACCAAGGTGGCGCTGAGCATCACCTGTGAGAATCTGCTCGACATGGATGCATTCTCAAAGTCTGACCCTCAGTGTGTGCTCTTCATGAACAGCTCAGGGCCTCACTGGTGTGAGATTGGCCGGACAGAGAAAATCGAGAACTGCCTCAATCCCAAGTTTTCCAAGACTTTTGTCGTTGACTACTACTTTGAGATGGTGCAGAAGCTGAGGTTTGAAATATACGACATTGACACCGTCAACTGCAGTCTGCAAGATGCTGACTTCCTGGGAGAAATGGAGTGTACCTTGGGACAGGTTGTGTCCTCAAGGAAACTAACAAGACCACTTGTCATGAAGGACAAGAAACCTGCAGGGAAAGGTACCATCACTATATGTGCCGAAGAAAGAACAGACAACAGAGTGGTGGATTTTGAAGTTGCAGGTAGAAAACTGGATAAAAAGGATTTCTTTGGCAAATCCGACCCGTTCCTGGAATTTTACAAGCCGACAGAAACTGGATGGCAGCTTGCTCACAGGACAGAGGTGATCAAAAATACCCTAAACCCAGTATGGAAACCATTCCGAATCCCACTGCAGTCACTCTGTGGAGGTGACGTCGAGAAATCGataaagGTAGAGTGTTATGACTACAACAGCAGCGGATCTCACGACTTTATTGGATCCTTTGAGACCACACTCTCCCAAATACAGCAGGCAACACAAACATATGCGGCTGAGTTTGAATGCACCAATAGTaagaagaaacagaagaagaaaggatACAAAAACTCTGGTATTATCGTTGTAAAGAAATGCAAGATAGTGAAGGAATATACCTTTCTGGATTACATAATGGGCGGCTGTCAGATTAACTTCACTATTGCTATTGATTTCACAGGCTCCAACGGGGCTCCAAGCTCCCCTCAGTCCCTCCATTACATCAACCCTCAGGGCTATAATGAATACCTGGCAGCTATCTGGGCAGTGGGTAATGTCATCCAGGACTACGACAGTGACAAGATGTTCCCTGCTTTTGGATTCGGAGCCCAGCTTCCTCCTTCATGGCAGGTCTCCCACGAGTTTCCCATCAACTTCAACCCATCAAATCCGTTTTGTGCAGgtaTAGAGGGTGTTGTCCAAGCCTACCAGCAGTGCCTGCCCCAGGTGAAGCTTTACGGTCCCACAAACTTTTCCCCAATCATCAACCACGTAGCCAATTTTGGCCTACAAGCCTTACAGCAGAAGACGGCCTCTCAATACTTTGTTCTGCTGATCATCACTGACGGAGTGATCACAGACATGGATCAGACGCGCAGTGCCATCGTCAACGCCTCTCGTCTGCCCATGTCCATCATCATTGTTGGAGTAGGGGGGGCGGACTTCAGTGCCATGGAGTTCCTGGATGGAGACGATGGAATTTTACGCTCTGCTGTAGGCGAGGCTGCCCTGCGGGACATCGTGCAGTTCGTGCCATTCAGGCAGTTCCAGAATGCAGGCATTGCAGCCCTTGCCCAAAGCGTACTGGCAGAGTTGCCTGACCAAGTGGCCTCCTTCTTCAATTTATTTGACCTGAAGCCCCCAGGCGAACCCACTCCTTCCTAGAAATTGTCCACAAGAAATGCTTGCTCAGAGCGTCTTGGCAGAAGTCCCAGGTCAGGTGGTGAGCTTCTTCAGTAAAATGAGTTTAAGTCCACCTCACAGCGACACACCTCTCCCTGACCTCTCAGCATCTGCCCCTTCCAGTG

Function

NR:

description
PREDICTED: copine-3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039790474.1 True 3516 mRNA 0.42 16 8347956 8361373
XM_039790475.1 False 1911 mRNA 0.49 17 8349675 8361372

Neighbor

gene id symbol gene type direction distance location
LOC120552407 cpne3,LOC104924704,LOC102292005,LOC108248831 coding downstream 705 8334787 ~ 8347251 (-)
LOC120552408 wdr37,LOC102292542,LOC101470374 coding downstream 21101 8303823 ~ 8326855 (-)
pfkpa LOC101472402,LOC100702375,LOC102201923,LOC102790125,LOC104924699 coding downstream 458957 7861932 ~ 7888999 (-)
fzd8a fzd8,LOC104927254,LOC104956203 coding downstream 905257 7439940 ~ 7442699 (-)
cul2 cul2,LOC102787920 coding downstream 987868 7343067 ~ 7360088 (-)
LOC120552414 LOC101468454,LOC102290369,LOC102196333,LOC103482264,LOC106914574 coding upstream 2101 8363474 ~ 8372337 (-)
LOC120552161 wwp1 coding upstream 16646 8378019 ~ 8417988 (-)
snx16 snx16 coding upstream 114754 8476127 ~ 8498014 (-)
LOC120552041 ahrr coding upstream 278168 8639541 ~ 8712753 (-)
LOC120552044 anks6 coding upstream 363076 8724449 ~ 8734819 (-)
G218455 NA non-coding downstream 143436 8203380 ~ 8204520 (-)
G218454 NA non-coding downstream 145320 8202435 ~ 8202636 (-)
G218450 NA non-coding downstream 290858 8056690 ~ 8057098 (-)
G218368 NA non-coding downstream 581559 7763500 ~ 7766397 (-)
LOC120552532 NA non-coding downstream 601524 7744835 ~ 7746432 (-)
G218473 NA non-coding upstream 73676 8435049 ~ 8435949 (-)
G218477 NA non-coding upstream 98125 8459498 ~ 8459710 (-)
G218469 NA non-coding upstream 161577 8522950 ~ 8533544 (-)
G218503 NA non-coding upstream 186400 8547773 ~ 8596404 (-)
G218522 NA non-coding upstream 272727 8634100 ~ 8634685 (-)
G218453 adarb2 other downstream 152077 8194929 ~ 8195879 (-)
G218085 LOC107687935 other downstream 2647380 5700229 ~ 5700576 (-)
G218019 NA other downstream 3311252 5027505 ~ 5036704 (-)
G217837 NA other downstream 4406627 3936010 ~ 3941329 (-)
G217780 chchd7,LOC102799933 other downstream 4643599 3692952 ~ 3704357 (-)
G218471 NA other upstream 69091 8430464 ~ 8430930 (-)
prkdc prkdc other upstream 436408 8797781 ~ 8851726 (-)
LOC120551928 LOC104943218,LOC103369878,LOC100710535,LOC102301415,LOC101469805 other upstream 596036 8957409 ~ 8970638 (-)
cngb3.1 LOC103363254,LOC102786718,LOC108428960,LOC104948783 other upstream 1472089 9833462 ~ 9848241 (-)
G218950 NA other upstream 2216026 10577399 ~ 10669527 (-)

Expression


Co-expression Network