fam49bb (fam49b,LOC104954579,LOC105915818,LOC103377397,LOC107085391)


Basic Information

Item Value
gene id fam49bb
gene name fam49b,LOC104954579,LOC105915818,LOC103377397,LOC107085391
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 19475880 ~ 19514037 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039790486.1
TTAAAACAAAGCAGCGGGTCTCCTCTGACCGGGCGGGTCTATCTTCAGTTAGGGAATGAAGGTGTATAACTTCCCCCTCCGCGCTCAGAGGTGGCACAAACCAAACTCCATTCTCGTTTGACGGTCACAATGACGCTCGATAACTAACCCGGAAACAGCAAatcgtttttcttcttctttcagccCGTACCGCTGGCTTTCTAGCGTGGTATGCAGACGTCGACTCCAGTGTTTTCTCTACGAGCATAAAGAGGCTGACCTCTGGTGGAGGACTGTGACCCGAGGCCACCTGCCAGGCCGGGCCTCCCTGCTCCTGACTGACTGCCTCACAGCTCCACTGCTGGTATCGTAACATGGGGAACCTACTGAAAGTTTTGACTTGCACAGATCTGGAACAGGAGCCCAATTTTTTCCTCGATTTTGAAAATGCCCAGCCCACAGATGCAGAGCGAGAGGTGTGGGAGCAGGTGGACGTGGTGCTGAAGGACGCTAAGGCGGTCCTGGATGAGCTGCAGGCGTACAAAGGAGCGGGGCAAGAGATCAGAGAGGCAATCCAGAATCCAAACGATGAAGTGTTACAGGAGCAGGCGTGGGCGGCTGTGGTTCCCCTGGTGGGGAAACTGAAGAAGTTCTATCAGTTCTCCCAGAGATTAGAGGCGGCGCTGCACAGCCTGCTGGGAGCTCTGACCAGCGAGTCTTACAACGACCCCACTCAGCACCTGGAGCGGGAGCAGGCGCTGGCCAAGCAGTTCGCAGAGATCCTGCACTTCACACTGCGCTTTGATGAGCTTAAAATGACAAATCCTGCCATTCAGAATGACTTCAGCTACTATAGGAGAACCCTGAGCCGAATGCGGATCAACAACGTACCGGCGGATGGTGAGAATGAAGTCAACAATGAACTGGCCAATCGGATCTCTCTGTTCTACGCCGACGCCACGCCCATGCTGAAAGCGTTAAGTGACGGCACAACCAAGTTTGTATCGGAGAACAAGAACCTGCCCATCGAAAACACGACAGACTGCTTAAGCACGATGGCGAGTGTGTGTAAAGTCATGTTGGAAACGCCGGAGTACCGCAGCCGGTTCACCAGTGAGGAGACGGTGTCTTTCTGCCTCCGGGTGATGGTCGGGGTCATCATCCTGTATGACTACGTCCATCCTGTAGGAGCTTTCGCCAAGTCGTCCAAAATTGACATGAAAGGCTGCATCAAAGTCCTCAAAGATCAGCCTCCGAACAGCGTAGAAGGCCTTCTCAACGCTCTCAGGTACACAACCAAGCATCTGAATGATGAATCAACCAACAAGACTATCAAGAGCATGCTGCAGTAGGACTGAGCTGCTCCAACTGCTTGCCTCACACCCTGCTGGGGGGAGACGCCACTCTCCTGACTGATGTCGGTgcacagaatgttttttttttttctttcttcttttgttgcttttttattttataatggaAAAAGAGCTAATAGCTCCGCCCTCTTTTATAATGCAAAATGCTACTGCCATTATGAACGTCTTTTTCTGTGCCAAAAAGATGTTGCTGAGGTAATGTTTTCGATAAAAGGCCATGCGACAATGGCAGCTAATGAAAGCATTGTGGGTCCTCTGGTGTTTTTAAACTCGTTTTTTCCCTATATAAGGGACGGGAGTGCTTTGACTTGAAaatttaaaagagagagagaaatatatagagaagtatatattatttttgtttgattcGTTATTTAATATTACATACTCTGCATGATGAAAATTGTCTTTTccttctatttaaaaaaaactaatggtTCAGTTGAATTTGTCTGCTCTATTGTGCattattaaatgttttgttattgAAATGGTACTTGTCAAAATGAGATTTAAGAgtactgtttttatattttttataggtTTTAAATTTGTgcatatgtcttttttttcatttcgttgtgttgtatttttcatttgaaaacTTAAAACTGTGATGTGTGCTAAATCAAATTTTAAAATTGGGAGTCTGTACTGTAAATGAGCAGTATGCTGTGGCTGGAGAAATTAAAAGGAGAACTCTTGTTTTCTACAA

Function

NR:

description
protein FAM49B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039790486.1 True 2070 mRNA 0.46 12 19475880 19514037

Neighbor

gene id symbol gene type direction distance location
ankha ankh coding downstream 145326 19315583 ~ 19330554 (-)
vps41 vps41 coding downstream 262228 19196583 ~ 19213652 (-)
LOC120552661 esco1,LOC102306999,LOC105019393,LOC107732058,LOC107599690 coding downstream 280357 19182050 ~ 19195523 (-)
lypla1 lypla1 coding downstream 356898 19112196 ~ 19118982 (-)
LOC120552400 NA coding downstream 405264 19069163 ~ 19070616 (-)
asap1b asap1 coding upstream 4493 19518530 ~ 19585448 (-)
chpf2 chpf2 coding upstream 125819 19639856 ~ 19648801 (-)
si:ch73-173p19.1 LOC103363515,LOC104954586 coding upstream 144852 19658889 ~ 19666720 (-)
kif9 NA coding upstream 375645 19889682 ~ 19908076 (-)
cdv3 cdv3 coding upstream 435944 19949981 ~ 19954961 (-)
G221090 NA non-coding downstream 29586 19446045 ~ 19446294 (-)
G221088 NA non-coding downstream 36341 19436966 ~ 19439539 (-)
G221086 NA non-coding downstream 101364 19372591 ~ 19374516 (-)
LOC120552156 NA non-coding downstream 158653 19316654 ~ 19317227 (-)
G220972 NA non-coding downstream 432664 19040265 ~ 19043216 (-)
G221095 LOC102309907,LOC101472733,LOC102788342,LOC101061645,LOC104929597 non-coding upstream 3335 19517372 ~ 19544392 (-)
G221138 NA non-coding upstream 86669 19600706 ~ 19600939 (-)
G221143 abcf2 non-coding upstream 138317 19652354 ~ 19656460 (-)
G221146 NA non-coding upstream 155667 19669704 ~ 19669954 (-)
G221149 NA non-coding upstream 165031 19679068 ~ 19730782 (-)
G221048 ankh other downstream 148986 19315591 ~ 19326894 (-)
mettl4 mettl4 other downstream 526385 18938913 ~ 18949495 (-)
LOC120552352 colec12,LOC102798044 other downstream 664936 18772977 ~ 18810944 (-)
G220833 NA other downstream 777910 18610236 ~ 18697970 (-)
si:ch73-174h16.4 LOC103364270,LOC104947970 other downstream 992104 18426762 ~ 18483776 (-)
LOC120552536 fbxl7 other upstream 1321141 20835178 ~ 20862688 (-)
rbis LOC101064519,LOC103367294,LOC102312013 other upstream 1703643 21217680 ~ 21221667 (-)
tfr1b NA other upstream 2475980 21990017 ~ 22011086 (-)
LOC120552473 NA other upstream 2600345 22114382 ~ 22120611 (-)
smpx smpx other upstream 2688730 22202767 ~ 22218381 (-)

Expression


Co-expression Network