ptprn2 (ptprn2,LOC102778033)


Basic Information

Item Value
gene id ptprn2
gene name ptprn2,LOC102778033
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 18231466 ~ 18357998 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039790534.1
GacgtcagaaatttaggagggGCTCCTCCGTGAAGCTGGTTGCTGTTTGTGGTGCTGAAACAACGCCTGTATTGTGTTGCCATTTagcgattctttttttttttttctgtctctgcgTTTCTCCTGTGCTTTCTCCTCCAGCATGCCTCTTTAGTCCGAGTCTCGTCCCAGCAGCTCACCACTGAGTCGGCGTTAATCACGCTGTTTTAGCGGAGGTGTGCGATGGATTAGTAGTAGCTGTATTAGGCTGGAGCGGTATGGATTCACTGTGGTGTCCCATCCTCTTCGCTGCATTGGCTGTCAGCCTCTTCTCACCTGCACTCGCTGACAGAAAATTTGGTTGCCTGTTTGAAGACGAGCTCTGTACGACATATGAGTTCTGCGTCAATGatGGAGTGTTTGGACAGTGCCAGGAGTTGGCCGCTGCAGACCTGTACACATATGATGTTTCTTCCTCTGCTCTGCAACGCCTCAGGATCCTCCTACAGAAACTGGCTCACAGAGGTTTGACGTGGCAGGACGACATCACCCAGAAGATCATCTCTAGAGAGCTTTCCAAACTGAGGACCGTTCCTCTCCGCCATCAGGCCACAGTTCCAAGCCCCCTGACCGCCTACAGCAGCTCCAGAGACAGGACACTAAGCAGAAACCTTCAGCAATACCTGAAGGGCCTGAGCTTCGTGCCGCAGTCTGAGGTCGATGGACAACATGGAATCCAACGACAGGGAGCCAATGTTCAGATTGAAGACATCAAGTCTGAAGGTCATTTGGAGCCCAGCCGGTCAAAACCCCAGCAGGGCTGGAAGGAGACCACTATCAGTCATCAGAAAGGAGCTGGCCAACCTCCAGTCACCAAAGTCTTCACACAGAGTGGAGAGGGCAGACACCCCAAACTCAGTGCAACCTACTCCAACCGGGACCCAGGAAGGAGCAAACTGCTATCCAGCCAGCTGGAACGGCTTCTTGCCGAGGTACCGAGCACTCAGCAGAGCTCCCCGGGTGGCAAGGCTGCGTGGCCCAAAGGAAAGCTCCATTACCTCAGCTACATCCGGCCAGCTCCAAGTGACCATGCAGAGCCGCAGTCTCAGGTGGCTTTTGGCTCCAAAACCCAAAGGCCTGATCTAGACAGACTTCTGCTCAAGGCTGGCTCAAACCGACTGACCGTCAAAGAGCCTCTTAGTGTCATGGATGAGCGATTCATCCATAATATGGTGAACCAGCTGGGAAGGCACAGCATCAACATGGAGGCTTTGATTGGTAAAGACCTGGACCAGCTGGCTGGGGTCATCACAGGAGCGCTGCAGGAGGTGGATGAGGAGCGGCCTGTTGTTGGGGCACAGCCAGGACCAGGAGCCGCTGACTCCAGGGGGGACATGGAGGGTAACAGGGAGCCTGTGGCAGCCATGCAATTGAATCAAGACCAGGACCTGAAATCAGACAAAGGGCAGGATCTAAACCAGAAAGACACACTGAGAATGAAACAGCAAGGCCAACAAATAGACGGAGCAGACAAAGAGACTGTTGACAAGCATGCAGCCTTCTTCTCCAAGCTGCTTGACTACCTCAACATGGAGCCCTTCGGTGATGCTCCAGAGGTCAACATTGGGCCACCAGCTCCACTCCGGAAAATGGTTGGACAGGAAAATGTCCAAAGCCGGACGACGCAGGGCCAAGTTCTGGTACCCCACCGCTGGGAGGAGAAAACCATCCCTGTGAAGGAAGGCTCCACCCTGCGTTTAACCGGTGGTGCAGATGGGCCTGACGCTCAGGTGGACTCAGAGATCCAGAGGTGGATGAAGGGGACTCAGGCCCCAGCGGGGAAAAAGCAGCTGGAGGAGCCGAAAAAGAAGGACATGAGAGTCAAAACTCAGCTGGTCCACGTTGCGGTGAAGGAGTTTTCCAGCAGAGGGAAGGACAGACACTTTGGCTACATTATCACTGGCACAGACTCCCTCACCACTGACCAGGGCTCGGATCTGATGGAGCGGCTGACGCAGAGGCTGAACCTCCATGCAGCAGACCTCACCCAGCTCTCTGTCTTGGGTCCAGCGTTGACTTTCAGAATTGGCCCCAACCCCAACAACGTGACCACTGCCGATCTGGTTCAAGTTGCAGTCCAACAGAAGCAGCAGCTGGAGAAGGAGACAGGCCTGAAGATAGTGGAGGCCGGAGTTAGTGATAGGGGCAGCCTGACCCAGATCCCCGTGGTGAAGGAGACCAGGGTGGAGTCGGGCCAGTTCCTGCTGCTCTCCGTCCTCTGCATGCTGTTCATCCTGTTGGCGCTGGCAGTGTCCACCACCTTCTTCTGCGTGCGCCAGCGCTCCCACCTACGCATGAAGGAAAAGTTGGCCAGCCTGGGTACTGACCCCAGTACTGATGCAACCGCAACCTATCAGGAGCTGTGCCGCCAGCGTATGGCAATCAGGACGTCGGAGCGTGTTGAGCGACCGGAGACCCTGCGCCACTCACGGCTCAACAGCGTCTCGTCCCAGTTTAGCGATGGCCCCGCAGCCAGCCCATCGACCCGCAGCAGCACCTCCTCCTGGTGCGAAGAGCCAGTGCCATCCAACATGGACATCTCCACTGGTCACATGATACTGTCATACATGGAGGACCACTTGAAGAACAAGAACCGTCTGGAGCGTGAGTGGGAGGCCCTGTGCTCCTACCAGGCAGAGCCCGGCGCCTGCAGTGTCGGGCAGGGCGAGCAGAGCTCCAAGAAGAACCGCTCAGATGCCGTGGTCGTATATGATCATTCCAGGATCACCTTGAAAGCAGAGAATAACCACGGCAACTCAGATTACATCAATGCAAGTCCCATAATGGACCATGACCCTCGCAACCCTACTTACATTGCCTCGCAGGGCCCACTTTTTTCCACCGTGGCGGACTTCTGGCAGATGGTGTGGGAGAGTGGCTGCGTCGTCGTCGTCATGCTGACCCCGCTTTCTGAAAATGGAGTGAAGCAGTGTCATCCTTACTGGCCTGACGAAGGCTCTGATGTCTACCACATCTACGAGGTCAACTTGGTGTCGGAGCACATCTGGTGCGAGGACTTCCTGGTGCGGAGCTTCTACCTGAAGAACCTGCAGACAAACGAGACACGCACCGTCACGCAGTTCCACTTCCTGTCCTGGATGGACCGCGGGATCCCCAACTCGGCCAGGACCCTTTTAGACTTCCGCAGaaaggTTAACAAGTGCTACCGGGGTCGATCTTGCCCAATAATTGTTCACTGCAGTGATGGAGCTGGCAGGAGTGGGACTTACATTCTGATTGACATGGTCCTCAATAGGATGGCTAAAGGTGCTAAAGAGATTGATATTGCCGCTACCCTGGAGCACTTGAGAGACCAGAGAGCTGGCATGGTCCAGACAAAGGAACAGTTTGAGTTTGCGCTGACAGCCGTGGCAGAGGAGGTGAACGCCATCCTGAAAGCGCTTCCTCAGTGAAGGCATCGCATCCCCCACCTTCTTCTCGCTCGCTGAGCACCGGTTTTCTCTGCCCACTCAAGACTGACATCTCTCTCTGCCCTTCCTTCTCCTcgctctgtttctctcttctgtctctgcctcctcttaacctctatatatactgtatacttatgAATGTCGTGCCAGATATCGCACCTGGATCCATATTCGCAAAAGTCTTGCCTCAGTACGACTGTTGATCTGGGATCTGTGTCGTTTTAGTGATTTGAGGCCAGACCAGCGGGGCCTGATCTGATCTGATGTGGGATCTTAGATCAGCTCTCCTACTGTGAGACTTTTTGTCATATGAACCCCGGCCCTCTATAACTGTGATGTAGTTCCTGAACATGCCGTTCTAGTGCCACTGAAGAGCTGTTTACGTGATGTCAAGTAAAGATTTTTGTTCCAAAATCAGCTATCTACAGTTGGAAAAATGTATAAAGATGCTTAGAAAATGGCTATTggtacatttaaaacaaactatAGTGGGGCTGTATTGAATTTACAATTAATATGCAGATTATGCTCTCGATAAATTGTTAAAGTTGTATAAAATGGCATTTATAATGTCTTCAATTTGCTTATTTTGTCTGACTAACAGTCTAAAATCttaagatattcaatttacggTCATATATGGCAAAGAAAAACAGTAAAttgtcacatttgagaagctgagaATGTTTGGCATTGTTGTTTAAAAGAataatgattaattgattatgaaACGGTTGCCGATTTTTACTCAACTTTAATCAACTAATTATTACAGCTCTTACCTATAGTActtttagaataataataataaagtaaattaaGTTATtgcctgtaaaaaataaatcctaaTATTGTACAGATCACATCCCCTAAATGAATTGATGTGTTAGATACATATAGCGTTTTGAAAATAAACTCCACGTTTCTTCTCCTCTGTGACCCGAATCAACCCACTATAGCTTCACATGTACAGAggttgaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattgttgtattTGGGGTCCAGACATCTGCTGTGATTCTCACAGGTCATATTTCTTGATATTCTTGACATATCAAGTGTTTTTTATTCCTCATCGCATACATTTTACACATTGTTACATGAACATCTCCGTTAAtattaaatgtaatacaaatatATCAACTTAGATATATCGATagtaacaataaatatatatttaagcaGAACTTATATTGGGATTGTTGCTGAATTTGTTTGTCCCTCCATCACTcgtatattgtgatattttgtgcaACATGAAAGATTATTCCCTCTATGTATAGACAATGAATGActttatgaatcccactatagTGCTATCTGAAATGTATACTGAGAGCCTCAATGAGaactatatattttgtgtgAAAAGTAACATTCAGGTTGATAATAAATCAGAACAGATTATACTG

Function

symbol description
ptprn2 Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in secretory granule; synapse; and transport vesicle membrane. Predicted to be integral component of membrane. Is expressed in brain. Human ortholog(s) of this gene implicated in prediabetes syndrome and type 1 diabetes mellitus. Orthologous to human PTPRN2 (protein tyrosine phosphatase receptor type N2).

NR:

description
receptor-type tyrosine-protein phosphatase N2 isoform X1

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K07817 PTPRN; receptor-type tyrosine-protein phosphatase N

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039790534.1 True 4999 mRNA 0.49 22 18231466 18357998

Neighbor

gene id symbol gene type direction distance location
mnx1 mnx1 coding downstream 83366 18145295 ~ 18148100 (-)
lmbr1 lmbr1,LOC102779560 coding downstream 98483 18098246 ~ 18132983 (-)
shha shh,LOC102780316 coding downstream 198238 18024594 ~ 18033228 (-)
LOC120552245 NA coding downstream 387178 17751382 ~ 17844288 (-)
LOC120552246 dlgap1,LOC100706187,LOC106534655 coding downstream 479668 17727065 ~ 17751798 (-)
ncapg2 ncapg2 coding upstream 1506 18359504 ~ 18374026 (-)
esyt2b esyt2 coding upstream 16722 18374720 ~ 18407925 (-)
LOC120552023 LOC103373088 coding upstream 255152 18613150 ~ 18617399 (-)
chmp4c chmp4c,LOC107086476,LOC106961905 coding upstream 259667 18617665 ~ 18620964 (-)
trnar-ccg_3 NA coding upstream 266728 18624726 ~ 18624798 (-)
G220732 dnajb6 non-coding downstream 17077 18207365 ~ 18214389 (-)
G220742 dnajb6 non-coding downstream 29948 18188724 ~ 18201518 (-)
G220695 NA non-coding downstream 128310 18066795 ~ 18103156 (-)
G220688 NA non-coding downstream 181982 18049016 ~ 18049484 (-)
G220685 NA non-coding downstream 209577 18020560 ~ 18021889 (-)
LOC120552692 NA non-coding upstream 114127 18472125 ~ 18578077 (-)
G220839 zfand1 non-coding upstream 264693 18622691 ~ 18623385 (-)
G220860 NA non-coding upstream 382419 18740417 ~ 18740616 (-)
G220888 NA non-coding upstream 457908 18815906 ~ 18816378 (-)
G220893 NA non-coding upstream 471753 18829751 ~ 18829985 (-)
G220412 csrnp1,LOC104937158,LOC102793366 other downstream 1356166 16874649 ~ 16875300 (-)
LOC120552205 LOC100711537,LOC102295084,LOC108230444,LOC106948898,LOC103140410 other downstream 1436342 16782072 ~ 16795124 (-)
drd3 drd3 other downstream 1946731 16266303 ~ 16284735 (-)
G220124 NA other downstream 2166245 16064670 ~ 16065221 (-)
G220117 usp12,LOC107701680,LOC107705210 other downstream 2226702 16003879 ~ 16004764 (-)
si:ch73-174h16.4 LOC103364270,LOC104947970 other upstream 68764 18426762 ~ 18483776 (-)
G220833 NA other upstream 252238 18610236 ~ 18697970 (-)
LOC120552352 colec12,LOC102798044 other upstream 414979 18772977 ~ 18810944 (-)
mettl4 mettl4 other upstream 580915 18938913 ~ 18949495 (-)
G221048 ankh other upstream 957593 19315591 ~ 19326894 (-)

Expression


Co-expression Network