cldn11b (cldn11,LOC104933881,LOC104940783)


Basic Information

Item Value
gene id cldn11b
gene name cldn11,LOC104933881,LOC104940783
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 26100888 ~ 26110027 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039790611.1
GATGGATctaggtttttgtttttctgtctcgAGTCTGTCTCTCCATATCTGGTTTAGGTTAGGATCTCAACAtgcgctctgattggctcagacTTTGGACTGAAGGGTACGTTTTCGCCACACCCTATAATAAATCTTATTCTAGGCATTTTGTTTTCGGATCACCCTGAGGCGCGTTAACGGCACGCTGCAGGATAACTTTCTCATTTctactgttctttttttttaaaggattctAATCTAAAATACGTATTTTAATAATCCTGGAAGAATATCGTACTTGTTATAAGTGAGGACTGCAGATATCTTTCGGATTACAGCTGAACTTTTCATCTTTTATGAACTGCGCTAAAGAAGGATCTAAATAGAACTTAACTTATAACTTTTCCGGCGCGTTTTTCAGTCTCTGGAACaacaaacaatacttttatattcACACAACTTCAGAGCTTCAGAAAAACTTCAGGTTTTTTTGGGGCCGAGTCTGAGTTGAGCGCGTAAAAACGCACGGCGGCTCCATATGGCGCACATGTGCAGGCAGATCACCGGCAGCGCGGCGAGCTGTGCGGGCTGGGTCGGGGTCATCGTCGCCACCGCAACTAACGATTGGGTCCGGACCTGCGACTACACGGTGACCACCTGCCTCCGCATGGACGAGTTGGGCTCGCGGGGACTCTGGGCAGAGTGCGTCATCTCCCCGGCGCTCTATCACTGTGTGGCCCTCAGCCAGATCCTCACCCTGCCCGcGTACGTCCAGACGTCCCGTGCTCTGATGATCTGCGCCTGTCTGCTCGGCCTGCCCTCCATGCTGCTGGTTCTCATGGCGATGCCGTGCGTCCGGCTGCAGAACGACACCGCCGCCATCAAGAGGCTCCGCGCCCGGGTGGGGGGGGTCCTGGTCATCCTCATGGGTGTGTGCGGCATCATATCGACCATCTGGTTCCCCATCGGCGCCCACCACGAGGAGCACCTGATGGCGTTCGGCGTCTCGCTGTACGCCGGCTGGATCGGCTCCGTTCTCTGTCTCCTGGGCGGCTTCGTGATCTTGTGTTGCCGCGGCACCGACCCCCCCGGGACCCCGAGCAGGGACAACAGCTTCTACTACTCCCGGCAAGGGGGCACGGCCACGCCGCTGGACCCCCCCGCCAACCACGCCAAGAGCGCCAGAGTGTGAACATCCCCCCTCATAACCCCCCCCTCATCAAAGTCTaagggag

Function

symbol description
cldn11 Enables identical protein binding activity. Involved in tight junction assembly. Located in several cellular components, including lipid droplet; neurofilament; and tight junction. Implicated in hypomyelinating leukodystrophy.

NR:

description
PREDICTED: claudin-11

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039790611.1 True 1217 mRNA 0.55 3 26100888 26110027

Neighbor

gene id symbol gene type direction distance location
lrrc34 NA coding downstream 288105 25797285 ~ 25812783 (-)
klhl15 klhl15 coding downstream 335576 25742577 ~ 25765312 (-)
acot9.1 acot9 coding downstream 394245 25684062 ~ 25706643 (-)
pdha1b pdha1,LOC104960622 coding downstream 417618 25669233 ~ 25683270 (-)
rps6ka3b rps6ka3,LOC107081812 coding downstream 440157 25591480 ~ 25660731 (-)
si:ch211-230g15.5 LOC103369797,LOC102301809,LOC102203330,LOC100701790 coding upstream 380 26110407 ~ 26148023 (-)
rmc1 clg3h18orf8,LOC104932202,LOC103368274,LOC101473408,LOC102288614,LOC103129440 coding upstream 213466 26323493 ~ 26345733 (-)
riok3 riok3 coding upstream 242604 26352631 ~ 26375762 (-)
trnai-aau_30 NA coding upstream 337659 26447686 ~ 26447759 (-)
trnai-aau_31 NA coding upstream 339816 26449843 ~ 26449916 (-)
G223348 NA non-coding downstream 14208 26026105 ~ 26086680 (-)
G223363 rpl22l1 non-coding downstream 26946 26071089 ~ 26073942 (-)
G223354 NA non-coding downstream 65087 26035415 ~ 26035801 (-)
G223347 NA non-coding downstream 77393 26022960 ~ 26023495 (-)
G223334 NA non-coding downstream 108701 25991869 ~ 25992187 (-)
G223449 NA non-coding upstream 323282 26433309 ~ 26494229 (-)
G223455 NA non-coding upstream 351299 26461326 ~ 26463045 (-)
G223436 NA non-coding upstream 358395 26468422 ~ 26470795 (-)
G223464 NA non-coding upstream 444826 26554853 ~ 26558519 (-)
G223471 NA non-coding upstream 483014 26593041 ~ 26658273 (-)
G223351 NA other downstream 41826 26054519 ~ 26059062 (-)
G223328 NA other downstream 58024 25981460 ~ 26042864 (-)
G223331 LOC101483661,LOC101069443,LOC103355338,LOC108249550 other downstream 102956 25983594 ~ 25997932 (-)
mynn mynn other downstream 266664 25817429 ~ 25834224 (-)
LOC120552722 NA other downstream 361948 25722490 ~ 25738940 (-)
G223395 cul1,LOC107713664 other upstream 106858 26216885 ~ 26218324 (-)
G223433 NA other upstream 293974 26404001 ~ 26409357 (-)
G223435 NA other upstream 361677 26471704 ~ 26475911 (-)
LOC120552560 NA other upstream 373902 26483929 ~ 26510127 (-)
LOC120552733 LOC100703031,LOC102297688,LOC106527684,LOC106916028,LOC104953541,LOC106590371,LOC101467375 other upstream 449408 26559435 ~ 26906332 (-)

Expression


Co-expression Network