chmp5b (chmp5,LOC104949656,LOC108230516)


Basic Information

Item Value
gene id chmp5b
gene name chmp5,LOC104949656,LOC108230516
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 19054260 ~ 19058076 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039790628.1
CAGTCTCTTCCGGGTGTTTTCCTTCAGCTGGACGGTGGACGGTGACAGTGAGCTAccttagcttttttttttaagtgttaaagCCTTAATTTTTGCCGAAATGAACCGAATTTTTGGCAGGGGAACACCCAAAGCTCCACCGCCGAACCTTACGGACTGCATAGGAACCGTTGATTCTCGTGCGGAATCTACTGACAAGAAGATTGCCAGACTAGATGCTGAACTTGTGAAATACAAGGACCAGATGAAAAAGATGAGAGATGGGCCCTCAAAGAACATGGTCAAGCAAAAAGCTATGAGAGTTCTGAAGCAGAAGCGAATGTATGAGGGCCAGAGAGATAACCTCATGCAGCAGTCGTTTAACATGGAACAAACAAACTACACACTCCAGACCCTTAAAGACACTAAAACCACTGTTGATGCCATGAAAATCGGCCTCAAAGACATGAAGAAGGCATACAAGCATGTGAAAATTGATCAGATTGAGGATCTTCAGGATGAGCTCGGGGACATGATGGAGGATGCCAATGACATCCAGGAGGCGCTGGGAAGAAGCTATGGCACGCCTGAAATTGATGACGACGACTTGGAAGCAGAGCTGGATGCTTTGGGAGACGAGCTCCTGATGGATGACGACAGCTCCTACCTGGACGAGGCTTCAACAGCTCCTTCCATCCCAGAGGGCATGCCCGGCGACAAGTCTGTCAACAGGGACGGTGTCCTGGTGGACGAGTTTGGCCTTCCTCAGATTCCTGCTACATAAAGGAGCAATCCGAACACTCGTGCTAGTTTTACATGTATCTTcgcctttttttgtatttatctaACTGACACTCCCAGCCTTAGGGTGCAGCATTGAAAACCAGAACATCTTCTGTGCAACGAATGATGAACTACAACTTCAGGCATCTTTAATTAAAAGTTCACTATTATTCTATGAGTGAGCTTCTATGTGTATCTGAGGTGATTGTTTGAATTGGGATTCTCTTAACTTTGTACAGTTTCTGCAGCGTTTGTCGCCAAGAacaaaataaattttatttttcaaacaatAAA

Function

symbol description
chmp5 Enables cadherin binding activity. Involved in several processes, including cellular response to muramyl dipeptide; midbody abscission; and regulation of cell cycle process. Located in cytosol.

NR:

description
charged multivesicular body protein 5

GO:

id name namespace
GO:0015031 protein transport biological_process

KEGG:

id description
K12198 CHMP5, VPS60; charged multivesicular body protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039790628.1 True 1056 mRNA 0.45 8 19054260 19058076

Neighbor

gene id symbol gene type direction distance location
myom1b myom1,LOC100698284,LOC102794243 coding downstream 17427 19006643 ~ 19036833 (-)
LOC120552316 lpin2 coding downstream 49095 18989181 ~ 19005165 (-)
LOC120552191 yes1 coding downstream 200644 18831587 ~ 18853616 (-)
enosf1 enosf1 coding downstream 227378 18821982 ~ 18826882 (-)
LOC120551921 tmem236,LOC104961611,LOC102297878 coding downstream 291414 18756353 ~ 18762846 (-)
LOC120552750 oprk1,LOC104949654,LOC103363868 coding upstream 1631 19059707 ~ 19065576 (-)
LOC120552400 NA coding upstream 11087 19069163 ~ 19070616 (-)
lypla1 lypla1 coding upstream 54120 19112196 ~ 19118982 (-)
LOC120552661 esco1,LOC102306999,LOC105019393,LOC107732058,LOC107599690 coding upstream 123974 19182050 ~ 19195523 (-)
vps41 vps41 coding upstream 138507 19196583 ~ 19213652 (-)
G220972 NA non-coding downstream 11044 19040265 ~ 19043216 (-)
G220893 NA non-coding downstream 224275 18829751 ~ 18829985 (-)
G220888 NA non-coding downstream 237882 18815906 ~ 18816378 (-)
G220860 NA non-coding downstream 313644 18740417 ~ 18740616 (-)
G220839 zfand1 non-coding downstream 430875 18622691 ~ 18623385 (-)
LOC120552156 NA non-coding upstream 258578 19316654 ~ 19317227 (-)
G221086 NA non-coding upstream 314515 19372591 ~ 19374516 (-)
G221088 NA non-coding upstream 378890 19436966 ~ 19439539 (-)
G221090 NA non-coding upstream 387969 19446045 ~ 19446294 (-)
G221095 LOC102309907,LOC101472733,LOC102788342,LOC101061645,LOC104929597 non-coding upstream 459296 19517372 ~ 19544392 (-)
mettl4 mettl4 other downstream 104765 18938913 ~ 18949495 (-)
LOC120552352 colec12,LOC102798044 other downstream 243316 18772977 ~ 18810944 (-)
G220833 NA other downstream 356290 18610236 ~ 18697970 (-)
si:ch73-174h16.4 LOC103364270,LOC104947970 other downstream 570484 18426762 ~ 18483776 (-)
G220412 csrnp1,LOC104937158,LOC102793366 other downstream 2178960 16874649 ~ 16875300 (-)
G221048 ankh other upstream 257515 19315591 ~ 19326894 (-)
LOC120552536 fbxl7 other upstream 1777102 20835178 ~ 20862688 (-)
rbis LOC101064519,LOC103367294,LOC102312013 other upstream 2159604 21217680 ~ 21221667 (-)
tfr1b NA other upstream 2931941 21990017 ~ 22011086 (-)
LOC120552473 NA other upstream 3056306 22114382 ~ 22120611 (-)

Expression


Co-expression Network