LOC120552519 (LOC104935677,LOC103364245)


Basic Information

Item Value
gene id LOC120552519
gene name LOC104935677,LOC103364245
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 5724235 ~ 5729256 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039790649.1
TTCTGGGTAAACTGTTATGTCTGCCCTGCACGTTGACATTGTGCTAGTGAGCTGACAGAAGAACTTGTCACACAGGTCagtccttcttcttctttctcccgctctctgtgtgttcgcTGCGACGAACAGAAAGGGACGGAGGCGTCCGGAACCTGCTGCTGTTAACGGCTGCTGTGTTTACAGGCGCTTACACACCGGGCGGCTAACTGCAGGATGGGAGCCTCGCTGTCCACACCTGCTGCTCCTTCAGTCAGGGCGGAGGCCATGATGGCCACCCCCCCTCCGGGCTGCCCCATGCACCAGGAAGCCCAGCCTGTCAAAGTGTCTCCACCTCCAGAGTGCCCCATGCATCAAGCTCAGCCTGTGAAAGCGTCTCCTCCGCCGGAGTGTCCGATGCACCGTGCAGAGCCAGGTCCAGCTCACCAGGAACGGGCCTATGAGTTTGTGGAGTGTCCCATGAAGGCGGCAGAAGGCATGAAGAGTGACATCGACCCATCAAATATGATGCCTCCCCCGAACCAGAAACCAGCTCCAGACCAGCCCTTTGAACTCCCCGTGGCCAGACAGGAGTCCTCTATTCCCCGCCACGACACAGACAAGAAGTGGGTGTACCCATCGGAGCAGATGTTCTGGAACGCCATGCTGCGGAAAGGGTGGCGGTGGCGTGAAGATGACCTCGAAGCTCAAGATATGACCAACATCATTAAAATCCACAACCAGAACAACGAGCAGGCCTGGCAGGAGATCCTGAAATGGGAGGCCCTACATGCAGGTGAGTGTCCATGTGGGCCCACCTTGAAGAGGTTTGGGGGAAAAGCCAAGGAGTTCTCGCCCAGGGCTCGCCTCCGCCACTGGATGGGcTACGAGCTGCCATTTGACCGCCACGACTGGATCATCGACCGCTGTGGGAGGGAGGTGCGCTACGTCATTGACTACTATGACGGTGAGATCAACAAGGAGAACTACCAGTTCTCCATCCTGGATGTACGCCCCGCCTACGACTCTTTAGGCGCCGTCTGGGACCGTATGAAGGTGGCCTGGTGGCGCTGGACCTCctaa
>XM_039790650.1
TTCTGGGTAAACTGTTATGTCTGCCCTGCACGTTGACATTGTGCTAGTGAGCTGACAGAAGAACTTGTCACACAGGTCagtccttcttcttctttctcccgctctctgtgtgttcgcTGCGACGAACAGAAAGGGACGGAGGCGTCCGGAACCTGCTGCTGTTAACGGCTGCTGTGTTTACAGGCGCTTACACACCGGGCGGCTAACGTAAGCATAACCGCTAACGTTCACCGGGAGGTTAACCAAGGAGGATAACTTctgTGCAGGATGGGAGCCTCGCTGTCCACACCTGCTGCTCCTTCAGTCAGGGCGGAGGCCATGATGGCCACCCCCCCTCCGGGCTGCCCCATGCACCAGGAAGCCCAGCCTGTCAAAGTGTCTCCACCTCCAGAGTGCCCCATGCATCAAGCTCAGCCTGTGAAAGCGTCTCCTCCGCCGGAGTGTCCGATGCACCGTGCAGAGCCAGGTCCAGCTCACCAGGAACGGGCCTATGAGTTTGTGGAGTGTCCCATGAAGGCGGCAGAAGGCATGAAGAGTGACATCGACCCATCAAATATGATGCCTCCCCCGAACCAGAAACCAGCTCCAGACCAGCCCTTTGAACTCCCCGTGGCCAGACAGGAGTCCTCTATTCCCCGCCACGACACAGACAAGAAGTGGGTGTACCCATCGGAGCAGATGTTCTGGAACGCCATGCTGCGGAAAGGGTGGCGGTGGCGTGAAGATGACCTCGAAGCTCAAGATATGACCAACATCATTAAAATCCACAACCAGAACAACGAGCAGGCCTGGCAGGAGATCCTGAAATGGGAGGCCCTACATGCAGGTGAGTGTCCATGTGGGCCCACCTTGAAGAGGTTTGGGGGAAAAGCCAAGGAGTTCTCGCCCAGGGCTCGCCTCCGCCACTGGATGGGcTACGAGCTGCCATTTGACCGCCACGACTGGATCATCGACCGCTGTGGGAGGGAGGTGCGCTACGTCATTGACTACTATGACGGTGAGATCAACAAGGAGAACTACCAGTTCTCCATCCTGGATGTACGCCCCGCCTACGACTCTTTAGGCGCCGTCTGGGACCGTATGAAGGTGGCCTGGTGGCGCTGGACCTCctaa
>XM_039790651.1
TCGATTTCAGCGTGATGACGTGTTTGGTTTACGTACGGCCGGTGCGCAACTCCTTCTGGGTAAACTGTTATGTCTGCCCTGCACGTTGACATTGTGCTAGTGAGCTGACAGAAGAACTTGTCACACAGTGCAGGATGGGAGCCTCGCTGTCCACACCTGCTGCTCCTTCAGTCAGGGCGGAGGCCATGATGGCCACCCCCCCTCCGGGCTGCCCCATGCACCAGGAAGCCCAGCCTGTCAAAGTGTCTCCACCTCCAGAGTGCCCCATGCATCAAGCTCAGCCTGTGAAAGCGTCTCCTCCGCCGGAGTGTCCGATGCACCGTGCAGAGCCAGGTCCAGCTCACCAGGAACGGGCCTATGAGTTTGTGGAGTGTCCCATGAAGGCGGCAGAAGGCATGAAGAGTGACATCGACCCATCAAATATGATGCCTCCCCCGAACCAGAAACCAGCTCCAGACCAGCCCTTTGAACTCCCCGTGGCCAGACAGGAGTCCTCTATTCCCCGCCACGACACAGACAAGAAGTGGGTGTACCCATCGGAGCAGATGTTCTGGAACGCCATGCTGCGGAAAGGGTGGCGGTGGCGTGAAGATGACCTCGAAGCTCAAGATATGACCAACATCATTAAAATCCACAACCAGAACAACGAGCAGGCCTGGCAGGAGATCCTGAAATGGGAGGCCCTACATGCAGGTGAGTGTCCATGTGGGCCCACCTTGAAGAGGTTTGGGGGAAAAGCCAAGGAGTTCTCGCCCAGGGCTCGCCTCCGCCACTGGATGGGcTACGAGCTGCCATTTGACCGCCACGACTGGATCATCGACCGCTGTGGGAGGGAGGTGCGCTACGTCATTGACTACTATGACGGTGAGATCAACAAGGAGAACTACCAGTTCTCCATCCTGGATGTACGCCCCGCCTACGACTCTTTAGGCGCCGTCTGGGACCGTATGAAGGTGGCCTGGTGGCGCTGGACCTCctaatggacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca
>XM_039790652.1
TACGGCCGGTGCGCAACTCCTTCTGGGTAAACTGTTATGTCTGCCCTGCACGTTGACATTGTGCTAGTGAGCTGACAGAAGAACTTGTCACACAGGATGGGAGCCTCGCTGTCCACACCTGCTGCTCCTTCAGTCAGGGCGGAGGCCATGATGGCCACCCCCCCTCCGGGCTGCCCCATGCACCAGGAAGCCCAGCCTGTCAAAGTGTCTCCACCTCCAGAGTGCCCCATGCATCAAGCTCAGCCTGTGAAAGCGTCTCCTCCGCCGGAGTGTCCGATGCACCGTGCAGAGCCAGGTCCAGCTCACCAGGAACGGGCCTATGAGTTTGTGGAGTGTCCCATGAAGGCGGCAGAAGGCATGAAGAGTGACATCGACCCATCAAATATGATGCCTCCCCCGAACCAGAAACCAGCTCCAGACCAGCCCTTTGAACTCCCCGTGGCCAGACAGGAGTCCTCTATTCCCCGCCACGACACAGACAAGAAGTGGGTGTACCCATCGGAGCAGATGTTCTGGAACGCCATGCTGCGGAAAGGGTGGCGGTGGCGTGAAGATGACCTCGAAGCTCAAGATATGACCAACATCATTAAAATCCACAACCAGAACAACGAGCAGGCCTGGCAGGAGATCCTGAAATGGGAGGCCCTACATGCAGGTGAGTGTCCATGTGGGCCCACCTTGAAGAGGTTTGGGGGAAAAGCCAAGGAGTTCTCGCCCAGGGCTCGCCTCCGCCACTGGATGGGcTACGAGCTGCCATTTGACCGCCACGACTGGATCATCGACCGCTGTGGGAGGGAGGTGCGCTACGTCATTGACTACTATGACGGTGAGATCAACAAGGAGAACTACCAGTTCTCCATCCTGGATGTACGCCCCGCCTACGACTCTTTAGGCGCCGTCTGGGACCGTATGAAGGTGGCCTGGTGGCGCTGGACCTCctaa

Function

NR:

description
PREDICTED: cytochrome c-type heme lyase

GO: NA

KEGG:

id description
K01764 HCCS; cytochrome c heme-lyase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039790649.1 False 1059 mRNA 0.58 8 5724313 5729203
XM_039790650.1 True 1113 mRNA 0.57 8 5724313 5729203
XM_039790651.1 False 1058 mRNA 0.57 8 5724235 5729256
XM_039790652.1 False 942 mRNA 0.58 8 5724313 5729223

Neighbor

gene id symbol gene type direction distance location
snx7 snx7 coding downstream 769256 4899955 ~ 4954979 (-)
trnas-gcu_51 NA coding downstream 854630 4869524 ~ 4869605 (-)
trnas-gcu_50 NA coding downstream 856065 4868089 ~ 4868170 (-)
trnas-gcu_49 NA coding downstream 857691 4866465 ~ 4866544 (-)
trnaa-agc_29 NA coding downstream 878001 4846162 ~ 4846234 (-)
LOC120552212 LOC102200884,LOC107389439,LOC103367775 coding upstream 118185 5847441 ~ 5848397 (-)
LOC120552249 hecw1 coding upstream 241938 5971194 ~ 6064050 (-)
bambia bambi,LOC102792619 coding upstream 506599 6235855 ~ 6240971 (-)
waca wac coding upstream 518166 6247422 ~ 6277304 (-)
LOC120552351 LOC103377033,LOC108245190,LOC101477525 coding upstream 897333 6626589 ~ 6639687 (-)
LOC120552435 NA non-coding downstream 68429 5639995 ~ 5655806 (-)
LOC120552525 NA non-coding downstream 118144 5598229 ~ 5606091 (-)
G218051 NA non-coding downstream 166625 5556906 ~ 5557610 (-)
G217992 NA non-coding downstream 826770 4897243 ~ 4897465 (-)
G217989 NA non-coding downstream 832744 4891018 ~ 4891491 (-)
G218088 NA non-coding upstream 59923 5789179 ~ 5789505 (-)
G218089 reck non-coding upstream 61507 5790763 ~ 5791025 (-)
G218090 NA non-coding upstream 63877 5793133 ~ 5793470 (-)
G218091 NA non-coding upstream 64839 5794095 ~ 5794306 (-)
G218095 NA non-coding upstream 69022 5798278 ~ 5799099 (-)
G218085 LOC107687935 other downstream 23659 5700229 ~ 5700576 (-)
G218019 NA other downstream 687531 5027505 ~ 5036704 (-)
G217837 NA other downstream 1782906 3936010 ~ 3941329 (-)
G217780 chchd7,LOC102799933 other downstream 2019878 3692952 ~ 3704357 (-)
f3a NA other downstream 2268191 3437802 ~ 3456044 (-)
G218453 adarb2 other upstream 2465673 8194929 ~ 8195879 (-)
G218471 NA other upstream 2701208 8430464 ~ 8430930 (-)
prkdc prkdc other upstream 3068525 8797781 ~ 8851726 (-)
LOC120551928 LOC104943218,LOC103369878,LOC100710535,LOC102301415,LOC101469805 other upstream 3228153 8957409 ~ 8970638 (-)
cngb3.1 LOC103363254,LOC102786718,LOC108428960,LOC104948783 other upstream 4104206 9833462 ~ 9848241 (-)

Expression


Co-expression Network