pdx1 (pdx1,LOC102786186)


Basic Information

Item Value
gene id pdx1
gene name pdx1,LOC102786186
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 15964337 ~ 15967374 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039790653.1
ATGTGCGGGTCCGCGGACGCCATGAATCGGGAAGATCATTTTTATCCTTCTCAGGTTTTTAAAGACTCCTGTGCCTACCAGAGAGCACACGGGGAGGACTACAGCCACAGCCCGCCGCCCTGCCTCTACATGAGCAGGCAGGTCCACTCCGTCTACACACCGCCGTCCATGGGAGCCTTGGAGCAGGCCAGCCTTCCTGACATTGCCTCTTACAGTCTACCCATGCGGGAAGATCCAGGTGTGCCTCAGCTCCACCATCCTCAGGGGCTCCAGCAGCAGCCTCTCCCGCCTGCTGCAGGCTATGGAGACACGGGGGAACAGAGCACATATCACCTCCCTTTCCCCTGGATGAAAACCACAAAATCTCACTCACACACCTGGAAGGGACAGTGGGCAGGCCCATACGTGATAGCGGAATCAGAGGAAAATAAACGCACGAGGACTGCCTATACGCGAGCCCAGCTGCTGGAGCTGGAGAAGGAGTTCCTGTTCAACCGCTACATCTCGAGGCCGCGCCGCGTGGAGCTGGCGCTCACCCTGAGCCTCACCGAGCGCCACATCAAGATCTGGTTCCAGAACCGGCGCATGAAGTGGAAGAAAGAGGAGGACCGGAGGAGGGCAAGGGGGGGTGACCCGGACCAGGACTCCTCCATCAGCTCTGGGGACCAGGGGGAGGCCGCGGGAGGGGTCACATCTACGAACGGAGCTCACACCACCTCACCCCCCGTTTCCCCGTTGCACGGTCCCGCCCTCTCCGCACCTAAGGCCAGGGAGCTCGCATAG

Function

symbol description
pdx1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within determination of left/right symmetry; endocrine pancreas development; and glucose homeostasis. Predicted to be active in nucleus. Is expressed in several structures, including digestive system; endoderm; intestinal rod; liver primordium; and somite. Used to study diabetes mellitus and diabetic retinopathy. Human ortholog(s) of this gene implicated in cerebral infarction; hyperglycemia; maturity-onset diabetes of the young type 4; pancreatic agenesis; and type 2 diabetes mellitus. Orthologous to human PDX1 (pancreatic and duodenal homeobox 1).

NR:

description
pancreas/duodenum homeobox protein 1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K07594 IPF1, PDX1; insulin promoter factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039790653.1 True 783 mRNA 0.61 2 15964337 15967374

Neighbor

gene id symbol gene type direction distance location
pan3 pan3 coding downstream 13487 15935625 ~ 15950850 (-)
ythdf3 ythdf3 coding downstream 121381 15833119 ~ 15842956 (-)
bhlhe22 bhlhe22 coding downstream 195750 15766414 ~ 15768587 (-)
trim55b LOC103362149 coding downstream 320408 15636850 ~ 15643929 (-)
rrs1 rrs1 coding downstream 347184 15614930 ~ 15617153 (-)
gtf3ab NA coding upstream 20780 15988154 ~ 15991388 (-)
rpl21 rpl21 coding upstream 29701 15997075 ~ 16000541 (-)
wasf3b wasf3,LOC102784165 coding upstream 47239 16014613 ~ 16029147 (-)
cdk8 cdk8 coding upstream 63085 16030459 ~ 16038837 (-)
LOC120551886 shisa2 coding upstream 136754 16104128 ~ 16111485 (-)
G220048 NA non-coding downstream 30068 15881506 ~ 15934269 (-)
G220031 NA non-coding downstream 30523 15857651 ~ 15933814 (-)
G220042 LOC100701814,LOC101478750,LOC102788341,LOC102295400,LOC103362138 non-coding downstream 93043 15870720 ~ 15871294 (-)
LOC120551922 NA non-coding downstream 187409 15773677 ~ 15776928 (-)
G220000 NA non-coding downstream 201627 15762479 ~ 15762710 (-)
G220171 NA non-coding upstream 150579 16117953 ~ 16118588 (-)
G220203 NA non-coding upstream 240884 16208258 ~ 16209541 (-)
G220211 NA non-coding upstream 297203 16264577 ~ 16264785 (-)
G220243 NA non-coding upstream 370444 16337818 ~ 16339037 (-)
G220254 NA non-coding upstream 397830 16365204 ~ 16366613 (-)
mtfr1 NA other downstream 283449 15676254 ~ 15680888 (-)
LOC120552366 NA other downstream 411283 15539203 ~ 15553054 (-)
trnar-ccg_2 NA other downstream 412645 15551620 ~ 15551692 (-)
c22h8orf34 LOC103367670 other downstream 604021 15302985 ~ 15360316 (-)
xkr9 NA other downstream 914561 15045160 ~ 15049776 (-)
si:ch211-140b10.6 polr1d other upstream 1357 15968731 ~ 15973663 (-)
G220117 usp12,LOC107701680,LOC107705210 other upstream 36505 16003879 ~ 16004764 (-)
G220124 NA other upstream 97296 16064670 ~ 16065221 (-)
drd3 drd3 other upstream 298929 16266303 ~ 16284735 (-)
LOC120552205 LOC100711537,LOC102295084,LOC108230444,LOC106948898,LOC103140410 other upstream 814698 16782072 ~ 16795124 (-)

Expression


Co-expression Network