LOC120552545


Basic Information

Item Value
gene id LOC120552545
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 3900951 ~ 3935126 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039790687.1
AAGTCATCAGAAGCCCCGCCCTCTGAGGGCCAACACAACTTTCTGCACTCAGGgtgaagacagagacacaggcagcaccgggtGGAGGCCATTCAACAGGAGTGACAAAATAGACCTGAATGACAACACCATGAGCCCATCATACAAGTCTCTCCCCCAGCACCAAGCTTCTTAGAAGCCCTCCAGAGAGTTCAGGCATCGGCAATGTGGCATTCGTACTTTCTGTTGGCAGTGCTGAGTGCAGGGACTGTAGAACCAGTCACAGCGTACAGTAATGGGAAGGTAAGTGTTGCCTGTAAAGACATGGTGCCTCAGCATGGTTACGATCCCAGCCTAGACCCTCCTCCGTACAGCATCACTGTGGACACATCCACATTCAGTCCAAGCGACAACGTCACAGTGTCTTTACAAGTTGCCTCCTCCAACACGACATTCTTCAAGGGGTTCCTGATAGAAGCTCGGGATGCTGGGAAATTGGAGTCCCCAGCAGTGGGTTTCTTCATCCTGACTGACCCCGCTGAGTCCCAGCTACTACAGTGTGGCCTCAATAAGGGATCTGGGGTGAGCCATGAGAATGCGAGAAAGACTCATGTTCAGGCTGTGTGGGAACCTCCAAATAACCCTCCACAAAGAGTCCAGTTTCTTGTGACAGTGGTGCAAAAGTATAAGGTGTACTGGGTGAAGATTGCAGGTCCTGTGGTGTCTTTTAGAGGAGCGACTGCTGTTCCATCAACTGCTGTTTCTGGTCAAACTACCAGCCCCACTGCTCTGTCCACACCGttTAGTTCAGCGGGGTGTGGCCACAGTAAATCTTGCCTCAGAGACCCAGTGGGCTGCCACCCAGAGTCAGACCCCCGCTGTTTCTTCCTGTCCTTTGCGAGTGATCAAGAAGGATCAGGTGTGATGTTCGAACTCAGTGGGCCTGCTGAAGGTTACCTGTCCTTTGCCCTGTCTCTGGACAAATGGATGGGGAATGATGACGTCTATCTGTGCGTGAATGATGGAGGCAGAGTTACCATCAGTGCGGCTTATGTCTCAGGCCGAACACCCCCTGAGCTGATTACAGAGGAGGACCTGTGGGGTCGGGCGTGGAGGTTGGCTGATGGGGTCATCCAATGTCGTTTCCAAAGAAACATCCTCGTCCCTCAGGGGGGGAACCGGTTTAACTTAAACCAGAGCTACTTCCTGTTTCTTACACATGGTATATCTCACCAGGGTGTAATCCACAGACACCAACGGCAACCTCtgatctccaccaatcagaaggCGATCACCGGATATCCGGAGGATCTGGTTGGCTCCCGCTCCCCCCTGCTGCTCAAGTTCCATGGTGTGTTAATGCTGACTGTCTGGATGTGGACAGTGAGCACAGCCATCATCATTGCTCGCCACTACAAAGACTGCTGGCCTGACACAACTCTGCTGGGACAAAAGCTGTGGTTCCAGCTCCATCGAACCATGGCGGTGTTGGCTGTGGTCCTAACGGCTGTGGCCTTCACCCTGCCTTTCATATACAGGATGGGATGGAGCAAGCATGCAGCCTCTCATCCTTACATCGGTTGCACCGTCATGGCTCTGTCTGTCATCCAGCTAATTGTGGGATTTCTCAGGCCAGCCCCGGAGTCCCCCAGGAGGAGGATCTTCAACTGGGTGCACTTGGTAACTGGCACTGCTGGCCAGATACTCGCTGtGGGGTGTGTGTTCCTGGGTGTTGCCCAGCAGACGCTGCCGTTACCCAGCCCCTGGTCTTCTGCAGTGCTGACTGGATGGCTGCTGTGGATCGTGCTGGCAGACCTGCTGCTCCAAAACCATTCCTACAGACTGCGGAGTAGAGGAAACCACAACGGTGACGACAAAGAGAGCCTTTTGTTTGCTCAGTTGGAGATGCAGCAGCATAGAGAGGGATCTAAAGTCAAGAAGATGGTGCTAGTGGTGTTCGTAATGGGAAACACAGGGTTCCTGGCTGCATTTATAAACACTATTGCAAATGTATGATTAACTACGATAATGTCTTGTAAAATGTATCTACAGTTTATATTTCTGTTATTAAAGGACACTTTTCTTTCACtgctaatataataataacaaatagaAAATTTCAGAAGTAATtactactttttttctttttttatctctggTGTATCATACTATAATGTTTAATGTCTTGTACCAATATTCCAATCTGTTCTTAAACTAGTTAACCTATATTTCTGTTACATTAGCCCAGTTaaccccttgtgttgtcttcgggtcaaatttgacccgttttctaaATGtgtatatcagaaatatgggtttctttttaacgaCCTCATTTtgattacccaaaaataacatggacgGATGAATCCACACAACACGCTTCAAAAGTACAACAGAAGATCGGCTctctacttttattgaatttggggtgttttgtaaaattttttagcatttgaaaaagaaattgaaatgtttcgaaacagtatcctgactgaacgttgacccttctgtgattgtccttcctttaatattagtctaaataattcatcacgaaacttgggtcttatttttctagttttgtCCATCGTTCTTATCAATAATAACTccgagatttttttttacactttgaaAAGAAGTTCAACAGGGTAGGAACCAATAAATCAGCCAACTTGTACTGTATTCAGTAAACACAGGTGAAGAGGAAAGTTATTACCAAAGCTGTCGTAAGCACCTATCACAGTTTACAGCCGCTCAGCTGAATGTGGAAAAATGTCCAAATTGTCTATGCAAACATATGATTCAACATATATGAAGGACAAAGTTcccaataataaataaatgatgaacATGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039790687.1 True 2834 mRNA 0.47 18 3900951 3935126

Neighbor

gene id symbol gene type direction distance location
arhgef4 arhgef4 coding upstream 27649 3714311 ~ 3873302 (+)
steap2 steap2 coding upstream 262918 3570272 ~ 3638033 (+)
abcd3a abcd3 coding upstream 467330 3401968 ~ 3433621 (+)
jcada kiaa1462 coding upstream 594114 3282595 ~ 3306837 (+)
znf438 znf438,LOC104952784 coding upstream 965382 2878512 ~ 2935569 (+)
trnas-gcu_20 NA coding downstream 128868 4063994 ~ 4064075 (+)
LOC120552069 NA coding downstream 286783 4221909 ~ 4250306 (+)
LOC120552080 LOC107732049,LOC100535932 coding downstream 378225 4313351 ~ 4323124 (+)
trnaa-cgc_15 NA coding downstream 458378 4393504 ~ 4393576 (+)
trnas-gcu_24 NA coding downstream 475754 4410880 ~ 4410962 (+)
G217788 NA non-coding upstream 73893 3826556 ~ 3827058 (+)
LOC120552544 NA non-coding upstream 192232 3705024 ~ 3708719 (+)
G217769 NA non-coding upstream 234458 3664861 ~ 3666493 (+)
G217768 NA non-coding upstream 236188 3664357 ~ 3664763 (+)
G217765 NA non-coding upstream 240637 3658336 ~ 3660314 (+)
G217795 NA non-coding downstream 5670 3940796 ~ 3941325 (+)
G217925 NA non-coding downstream 467923 4403049 ~ 4403369 (+)
G217927 NA non-coding downstream 501297 4436423 ~ 4436735 (+)
G217956 NA non-coding downstream 588468 4523594 ~ 4523896 (+)
G217969 NA non-coding downstream 720139 4655265 ~ 4655474 (+)
chchd7 chchd7,LOC102799933 other upstream 196576 3670420 ~ 3704375 (+)
G217723 cnn3 other upstream 357166 3495450 ~ 3543785 (+)
LOC120552392 mtpap other upstream 667129 3220615 ~ 3233822 (+)
G217606 svil other upstream 879309 3006283 ~ 3021642 (+)
G217377 NA other upstream 2225551 1669162 ~ 1675400 (+)
ppp1r17 NA other downstream 320922 4256048 ~ 4261598 (+)
trdmt1 LOC104946219,LOC101070638 other downstream 576587 4511713 ~ 4522706 (+)
LOC120552660 NA other downstream 3425480 7360606 ~ 7373347 (+)
LOC120552265 LOC101478037,LOC102216221,LOC100695799 other downstream 4588173 8523299 ~ 8596356 (+)
G218441 LOC101478037,LOC102216221,LOC100695799 other downstream 4615657 8550783 ~ 8606578 (+)

Expression


Co-expression Network