ssr1 (ssr1,LOC104966062)


Basic Information

Item Value
gene id ssr1
gene name ssr1,LOC104966062
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 26945450 ~ 26968414 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039790722.1
GCGCATGCGTCGTAGTAACTGTAGCGGAAGCGGCACTCACAGCTGTCTGACACTGAATGAGAACGCACTGATTTCGCCTCCAAAAATGATGAAATTTCTCCCTAAACTGCTGGTGCTAGCGCTGCTAGCCTTCCCGGCGACCCTCCTCGTCAAAGGGCCGATGGCGAGCGCCCAGGATCTGACGGAGGACGAGGAGGCCGAGGCTGTGGAAGACGACGTTGTGGATGACGCGACCGCCGACGCCGAGGCTGAAGACGAAGACGACGAGGCGGAAGTGGAAGACGACGAGAATGTGGAGCTGacggaagaaaaagaagatgaagaggaagaaGCGTTGGTTGGCGAGGTGAAAGCTTCCCCTAACGCTGACACCACCATCCTGTTCGTCAAAGGAGACGaCTTCCCTGCCAACAACATCGTCAAGTTCCTGCTCGGCTTCACCAACAAGGGATCGGAGAACTTCGTCGTGGAGTCTCTGGATGCTTCTTTCCGTTACCCACAGGATTACCAGTTCTACATCCAGAACTTCACCGCTCTGCAGCTCGGCATCGAGGTTCCCGGCGGCAGACAGGCCACCTTCGAGTACTCCTTCATCCCCGCGGAGCCAATGGGAGGGCGGCCGTTTGGACTCGTCATCAACCTCAACTACAAGGACAGCAACGGAAACGTTTTCCAGGATGCCGTGTTCAACCAGACGGTCACCATCACCGAGAGAGAGGACGGCTTAGACGGAGAGACGATCTTCCTGTACGTCTTCCTGTCCGGCCTCGGGCTGCTGGTCATCGTAGGCCTTCACCAGCTGATGGAGTCTAGAAAGAGGAGGCGTCCCGCTCCAAAGGTGGAAATGGGAACTTCGAGCCACAATGACGTCGACCTGAGCTGGATCCCTCAGGAAACACTCAACCAGATCATGCAGAGTCGCAGAGACAAGGCGTCTCCCAAAAGATCTCCTCGCAAGAGGAACCAGAAACGCTCGGCCGGCTCGGACGAGTGACGGGCGCCAGCGACACCACGGCGGCAAAAACACTTCATCCGACCGTCTAcgtgggaggaggaagaggggggagggggaggaggaggaggaggaggaggggcgaGTGAGAGGGGCTTTGAGCGCCACGCTGAGCGCACTCTGCCCTCTCACCTGAGGAACTTTAACCAGTACCAGGCACCGAGATGGCTGGCTCTCTACTGTCATCTTAAAAAActgttccacacacacacacacacacacacacagacacagacacagacacacacacagacacagacacacacacacagacacacacacacacacacagacacagacacagacacacacacagacacacacacacacacagacacacgaggGAGAGCAAATACTCATCCTAAAACAGGTGTGTTGGGTTTAAAAGGCACGTGTGAGGACGTTTTCCTCTAAAGGTCGTTGGTTTTCTTTCATTCTATTTGTTTGTCGAAGCGTTTTTAGTACGAGAACGGCTGATGGGATCGCTGTGAGACCGTTTTTGATTGTTTGGTTATTACCTCCCACTCTGGTGTAAAAGTCAAaggaggaaaaataaaaaataaaacgccCAAAAGATCTGGTTTTTAGTCTCTGAAAATCTCACGacgactttctttttttaatcgtcTCGTACGATGGTAAACTCTGGCTTCAGAACCGCTGCTCGGGCGGAGTAAGCCATCTGAAGAAGCCGACTTGTGATGGACATTCATCAccatttttctacttttttttttttttttagaacaaaTGATTCATTAACATTTTGCAGATGGACTGATGATGTAACTCTGTCGTTTTTAGTTGCAGCTGTACTCGTGATGGAGCCACGATGACGGGAACGAATGCTTTGTCGATCGGGGCCTGCACATTTCGAAGTCTCTCTGCTCTCCTGCGTTTGCTTCGCTTGTTTTCACTGTACAGATCCTAAAAAAGGAGAGTCTGACCCCTGGTGTCGGCTCTCACCGATTGACCCACTTCTGACGCTCTTTCTCAAAAAGTCTGCGAGGACTCGGTCCGTCCACCGGTTTAAAATAGTAGATAATGTGACACGGCTTTCAGACTCTGAGCCATTTGTGCaggagagcacacacacacacacacctgcagcagGCAACATCCCACATTTCATCGTGTTCATTTTATATCTGGGTGTGAAAGGAAGCAAAAGGAGTGTCAAAAATAAACCTGGAACAAGCTTGCAAGAACATAACCTGTA
>XM_039790724.1
CGCATGCGTCGTAGTAACTGTAGCGGAAGCGGCACTCACAGCTGTCTGACACTGAATGAGAACGCACTGATTTCGCCTCCAAAAATGATGAAATTTCTCCCTAAACTGCTGGTGCTAGCGCTGCTAGCCTTCCCGGCGACCCTCCTCGTCAAAGGGCCGATGGCGAGCGCCCAGGATCTGACGGAGGACGAGGAGGCCGAGGCTGTGGAAGACGACGTTGTGGATGACGCGACCGCCGACGCCGAGGCTGAAGACGAAGACGACGAGGCGGAAGTGGAAGACGACGAGAATGTGGAGCTGacggaagaaaaagaagatgaagaggaagaaGCGTTGGTTGGCGAGGTGAAAGCTTCCCCTAACGCTGACACCACCATCCTGTTCGTCAAAGGAGACGaCTTCCCTGCCAACAACATCGTCAAGTTCCTGCTCGGCTTCACCAACAAGGGATCGGAGAACTTCGTCGTGGAGTCTCTGGATGCTTCTTTCCGTTACCCACAGGATTACCAGTTCTACATCCAGAACTTCACCGCTCTGCAGCTCGGCATCGAGGTTCCCGGCGGCAGACAGGCCACCTTCGAGTACTCCTTCATCCCCGCGGAGCCAATGGGAGGGCGGCCGTTTGGACTCGTCATCAACCTCAACTACAAGGACAGCAACGGAAACGTTTTCCAGGATGCCGTGTTCAACCAGACGGTCACCATCACCGAGAGAGAGGACGGCTTAGACGGAGAGACGATCTTCCTGTACGTCTTCCTGTCCGGCCTCGGGCTGCTGGTCATCGTAGGCCTTCACCAGCTGATGGAGTCTAGAAAGAGGAGGCGTCCCGCTCCAAAGGTGGAAATGGGAACTTCGAGCCACAATGACGTCGACCTGAGCTGGATCCCTCAGGAAACACTCAACCAGATCAACAAGGCGTCTCCCAAAAGATCTCCTCGCAAGAGGAACCAGAAACGCTCGGCCGGCTCGGACGAGTGACGGGCGCCAGCGACACCACGGCGGCAAAAACACTTCATCCGACCGTCTAcgtgggaggaggaagaggggggagggggaggaggaggaggaggaggaggggcgaGTGAGAGGGGCTTTGAGCGCCACGCTGAGCGCACTCTGCCCTCTCACCTGAGGAACTTTAACCAGTACCAGGCACCGAGATGGCTGGCTCTCTACTGTCATCTTAAAAAActgttccacacacacacacacacacacacacagacacagacacagacacacacacagacacagacacacacacacagacacacacacacacacacagacacagacacagacacacacacagacacacacacacacacagacacacgaggGAGAGCAAATACTCATCCTAAAACAGGTGTGTTGGGTTTAAAAGGCACGTGTGAGGACGTTTTCCTCTAAAGGTCGTTGGTTTTCTTTCATTCTATTTGTTTGTCGAAGCGTTTTTAGTACGAGAACGGCTGATGGGATCGCTGTGAGACCGTTTTTGATTGTTTGGTTATTACCTCCCACTCTGGTGTAAAAGTCAAaggaggaaaaataaaaaataaaacgccCAAAAGATCTGGTTTTTAGTCTCTGAAAATCTCACGacgactttctttttttaatcgtcTCGTACGATGGTAAACTCTGGCTTCAGAACCGCTGCTCGGGCGGAGTAAGCCATCTGAAGAAGCCGACTTGTGATGGACATTCATCAccatttttctacttttttttttttttttagaacaaaTGATTCATTAACATTTTGCAGATGGACTGATGATGTAACTCTGTCGTTTTTAGTTGCAGCTGTACTCGTGATGGAGCCACGATGACGGGAACGAATGCTTTGTCGATCGGGGCCTGCACATTTCGAAGTCTCTCTGCTCTCCTGCGTTTGCTTCGCTTGTTTTCACTGTACAGATCCTAAAAAAGGAGAGTCTGACCCCTGGTGTCGGCTCTCACCGATTGACCCACTTCTGACGCTCTTTCTCAAAAAGTCTGCGAGGACTCGGTCCGTCCACCGGTTTAAAATAGTAGATAATGTGACACGGCTTTCAGACTCTGAGCCATTTGTGCaggagagcacacacacacacacacctgcagcagGCAACATCCCACATTTCATCGTGTTCATTTTATATCTGGGTGTGAAAGGAAGCAAAAGGAGTGTCAAAAATAAACCTGGAACAAGCTTGCAAGAACATAACCTGTA

Function

symbol description
ssr1 Acts upstream of or within cellular response to estrogen stimulus. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including axis; fin; hatching gland; periderm; and polster. Orthologous to human SSR1 (signal sequence receptor subunit 1).

NR:

description
translocon-associated protein subunit alpha isoform X2

GO: NA

KEGG:

id description
K13249 SSR1; translocon-associated protein subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039790722.1 True 2231 mRNA 0.52 10 26945450 26968414
XM_039790724.1 False 2215 mRNA 0.51 9 26945450 26968413

Neighbor

gene id symbol gene type direction distance location
trnai-aau_34 NA coding downstream 477618 26467759 ~ 26467832 (-)
trnai-aau_33 NA coding downstream 478230 26467147 ~ 26467220 (-)
trnai-aau_32 NA coding downstream 478940 26466437 ~ 26466510 (-)
trnai-aau_31 NA coding downstream 495534 26449843 ~ 26449916 (-)
trnai-aau_30 NA coding downstream 497691 26447686 ~ 26447759 (-)
LOC120552563 NA coding upstream 4433 26972847 ~ 26980874 (-)
LOC120552564 nebl coding upstream 18911 26987325 ~ 27054360 (-)
LOC120552734 nebl coding upstream 78413 27046827 ~ 27129394 (-)
LOC120552735 nebl coding upstream 168357 27136771 ~ 27189544 (-)
LOC120552579 NA coding upstream 226916 27195330 ~ 27205153 (-)
LOC120552561 NA non-coding downstream 16429 26917333 ~ 26929021 (-)
G223493 NA non-coding downstream 188598 26756123 ~ 26756852 (-)
G223475 NA non-coding downstream 197981 26738053 ~ 26747469 (-)
G223487 NA non-coding downstream 226635 26676847 ~ 26718815 (-)
G223490 NA non-coding downstream 229687 26711780 ~ 26715763 (-)
G223522 NA non-coding upstream 8064 26976478 ~ 26977294 (-)
G223515 NA non-coding upstream 14370 26982784 ~ 26991750 (-)
G223518 NA non-coding upstream 36909 27005323 ~ 27059504 (-)
G223517 NA non-coding upstream 76423 27044837 ~ 27148007 (-)
G223534 NA non-coding upstream 119319 27087733 ~ 27088197 (-)
LOC120552733 LOC100703031,LOC102297688,LOC106527684,LOC106916028,LOC104953541,LOC106590371,LOC101467375 other downstream 39118 26559435 ~ 26906332 (-)
LOC120552560 NA other downstream 435323 26483929 ~ 26510127 (-)
G223435 NA other downstream 469539 26471704 ~ 26475911 (-)
G223433 NA other downstream 536093 26404001 ~ 26409357 (-)
G223395 cul1,LOC107713664 other downstream 727126 26216885 ~ 26218324 (-)
G223516 LOC107098890,LOC106903449,LOC105416179,LOC103369801,LOC107756860,LOC108228419 other upstream 136184 27104598 ~ 27188218 (-)
G223538 NA other upstream 189559 27157973 ~ 27483161 (-)
LOC120552569 NA other upstream 289959 27258373 ~ 28498012 (-)
rreb1a rreb1 other upstream 547546 27515960 ~ 27625569 (-)
G223640 NA other upstream 672150 27640564 ~ 27685979 (-)

Expression


Co-expression Network