LOC120552656 (cdh18,LOC102310872)


Basic Information

Item Value
gene id LOC120552656
gene name cdh18,LOC102310872
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 23128644 ~ 23308035 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039790843.1
AGATGCGCACACGTTCACCGGCTCGGCTCGCTCGTCCCGTCGCCCGCACAcacggagagagggagagtctCGGCTCTCCGCAAGCCGTGCAGTCAAGCTCTGCCCTGGAGAAGGATGGCAGCGTTACTTTGCAACTGAAGGTAGAGGCGGAGGGAAAGAATAATGAGGGACAAACCCAAACACCTTTTTTTTGCCGTTAATCAGCTGccgtgtgtgttcaggggaGTTCACGCGGACAggaAATCCAGAATGGCTTTCAGGATTAACCTCTGCACTTGGTAGAACTACCCAGAAGTTCACGTCTGTTTGCACAGCATCTCACAGCCTGGAAAATTCCATAATGTAAATGTatcttgcttgttttttttttctccattaaaCCTTCCGCTTTTGGCCATGAACCTTAGAGGATCTACCGGGACCGCTATTTCCTTAGTTTGGATATAGATTCCTCTTTTGCTTTGACTATTGCACAGGCCTGGAGCGGTGGCAAGTTGTGGCGGCGGCGGTGGTGGGAGGACCTTACCACTTTGGAACACGGGGATAACTTTTACAAAAGCACGCGCCACCATGAGGATATCCACCACCTCCTGTCTCTGTCCCTTTCTGGTCTGCCTCTGTTTCATCCAGAGGTGCTACGGGGCGGGCCACCACGTCCCCGCCAAAGTGCCCTCCAAGAACCAGACCAAACTGGCCAACGGGGAGACGGAAGTGCACCACAGGCCCAAGCGTGGCTGGATCTGGAACCAGTTCTTTGTTTTAGAAGAACACTTGGGACCAGATGCACAGTATGTGGGAAAGCTTCACTCAAACTCAGATAAAGGCGATGGATCCGTCAGGTACATTCTGAGCGGGGAAGGAGCTGGAACTATATTTATCATCGATGAAGTGACAGGAGATATTCATGCCACTAAGAGTCTGGATCGCGAAAGGAAAACACATTATGTCCTGCATGCACAAGCCTTGGACCGCTACACAGAGGAGGCGCTGGAACCAAAGTCGGAATTCATCATCAAAGTACAAGACATCAATGACAATGCTCCCAAATTTCCAGATGGACCCTTTGTAGCTACGGTGCCTGAGATGTCTGAAGTGGGCACTTCTGTGTTGCAAGTCACAGCGTCTGATGCTGACGATCCCACCTATGGAAACAGTGCCAGAATAGTCTACAGTATTCTACAAGGACAGCCATATTTCTCCGTCGACCCCAAAACAGGAATCATCAGGACTGCCTTATCTGACATGGACCGGGAAGCCAGAGAACATTACACCGTTGTTATCCAAGCCAAAGACATGGCAGGCCAGGTTGGAGGCCTCTCCGGCTCCACCACCATCAACATAACTCTGACAGACGTCAACGACAACCCGCCCATGTTTCCCCAAAAAAATTACCAGCTGTACGTCCCCGAATCAGCTCAAGTAGGGAAACCGGTGGGGAAGATCAAAGCCAATGATGAGGACCTTGGCATCAATGCAGACATCAAGTACAGCATCATTAACTCAGAGGGGGCCAACACGTTCTCCATATCTACAGACAGGGACACGAGAGAGGGGATCATCAGCCTCAAAAAGCCTCTGAACTACGAGAGAAAGAAGACCTACACTCTCCACATTGAGGGGACGAATACACATATGGATCCTCGTTTTTCCTATCTTGGCTCTTTCAAAGACACCGCCACCCTCAAGATCACAGTTGGGGATGTGGACGAAGCTCCTGTGTTTTCTATAGATCATTACATCATGGATGTATATGAGAACTCACCGAGTGGCACAGAAGTGGGCGTCGTAACAGCTCGAGATCCTGACAGCAGGAACAGTCCTGTCAGGTACTTTTTGGACAGCAAAGAGGAAGGAGTAAGGTACTTCAGAATCGATGAAATCAGTGGACTTATACGGACGACGCAGCCTCTCGACAGAGAAGACATGGCTTGGCACAACATCACTGTGATGGCCTCGGAGGTTGACAACCCCAGCCTGCTCAGTCACGTTCCTGTTACCGTCCAGGTGCTGGACGTGAACGATAATCCGCCAGAAATAGCTACAGACGAGGAGGTCATTGTGTGTGAGAGCTCAAGGCCGGGGCAGGTGATCCAGACTGTCACAGCAGTGGATAAGGATGACTTTGCCAATGGACAGCGGTTTTCCTTTGCTTTGCCGAGCCAGCTACCAGTTAATCCCAACTTCACCCTGAAGGACAACGAAGACAGCACAGCCAGCATCATTGGCAGGCGGCGGCGTTTCAACCACCTGACCCAGGAGCTGTATGAGCTGCCCATTGTGGTGTGGGACGGTGGGGAGCCGTCGTTGAGCGGCACCAGCACCTTGACCCTCCGGGTGTGCCCATGCCAGCGCCACGGCAGGATCCGGATGTGCCAAGGCGAGGCGTTCCTCTCCTCGGCGGGTCTCAGCACGGGGGCTCTGATTGCCATCCTGCTGTGCATCGTCATCCTGCTGGCAATCGTGGTTCTCTTCGTCACACTGAGACGGAGCAAGAAAGAGCCCCTTATTATCTCCGAAGAGGACATCCGAGAGAACGTGGTCACCTACGACGACGAGGGCGGAGGCGAGGAGGACACCGAGGCCTTTGACATGATCGCCCTGCGCAACCCAGCCGCCGCCGAAGAGCTCAAGTTCCGGCGGGACGTTCGCCCAGAGGCGAGAAAACACTGCGCCACGCCCCGCAGCCGCCGGACCAAGGCGGTGGAGCTGGACGAGGTGGACGTGCACGAGTTCATCAAGCAGAGACTGGTGGAGGCCGACGTGGACACCAGCGTGCCGCCCTACGACTCCCTCCAGACCTACGCTTACGAGGGCCAGGGCTCACCCACGGGATCCATCAGCCCTTTAGACACTCCCGGGACACAATCAGAGCAGGATTATAACTATCTGGACGACTGGGGGCCTGAGTTCCAGAAACTGGCAGAACTCTACGGAGAGGCAGATTCAGATGTGACGACCTAGTCGGCGATTTCGCTCCTGTGCAAACCAAATCTGTTtgaaatacgtttttttttttcaaattttcagTGGACACTATAAACAAACAGAGATGCTTTCACACTGTTCTGGTGGTTTACGACTTTTACTGTTGAACTCAAAAgactgctatttttttttttttctttttcattttgtcgctttggattATTGGTCGTTCATCTGGAAgtattaaaacagattttaaGATGGAAGAACAACAATATGggggaaaaggaaaaggaaatttTCCTTGgtgtatattttttattgctCAATAAAGTCCTAAAATCCACATGAGTGGATATGTGAAAAA
>XM_039790844.1
TCCTGTCTCCTTCCTCACACAGCTTTTGCTGCTGCTACTCACTGCCGTGTGCACTTCAGCACAGCATCCACAACCTGAAGTATCAGTCTTCTGTAAAGCACCCATCTGGAACTCTACGTCAAGCTGCACAGGTAAGgaAATCCAGAATGGCTTTCAGGATTAACCTCTGCACTTGGTAGAACTACCCAGAAGTTCACGTCTGTTTGCACAGCATCTCACAGCCTGGAAAATTCCATAATGTAAATGTatcttgcttgttttttttttctccattaaaCCTTCCGCTTTTGGCCATGAACCTTAGAGGATCTACCGGGACCGCTATTTCCTTAGTTTGGATATAGATTCCTCTTTTGCTTTGACTATTGCACAGGCCTGGAGCGGTGGCAAGTTGTGGCGGCGGCGGTGGTGGGAGGACCTTACCACTTTGGAACACGGGGATAACTTTTACAAAAGCACGCGCCACCATGAGGATATCCACCACCTCCTGTCTCTGTCCCTTTCTGGTCTGCCTCTGTTTCATCCAGAGGTGCTACGGGGCGGGCCACCACGTCCCCGCCAAAGTGCCCTCCAAGAACCAGACCAAACTGGCCAACGGGGAGACGGAAGTGCACCACAGGCCCAAGCGTGGCTGGATCTGGAACCAGTTCTTTGTTTTAGAAGAACACTTGGGACCAGATGCACAGTATGTGGGAAAGCTTCACTCAAACTCAGATAAAGGCGATGGATCCGTCAGGTACATTCTGAGCGGGGAAGGAGCTGGAACTATATTTATCATCGATGAAGTGACAGGAGATATTCATGCCACTAAGAGTCTGGATCGCGAAAGGAAAACACATTATGTCCTGCATGCACAAGCCTTGGACCGCTACACAGAGGAGGCGCTGGAACCAAAGTCGGAATTCATCATCAAAGTACAAGACATCAATGACAATGCTCCCAAATTTCCAGATGGACCCTTTGTAGCTACGGTGCCTGAGATGTCTGAAGTGGGCACTTCTGTGTTGCAAGTCACAGCGTCTGATGCTGACGATCCCACCTATGGAAACAGTGCCAGAATAGTCTACAGTATTCTACAAGGACAGCCATATTTCTCCGTCGACCCCAAAACAGGAATCATCAGGACTGCCTTATCTGACATGGACCGGGAAGCCAGAGAACATTACACCGTTGTTATCCAAGCCAAAGACATGGCAGGCCAGGTTGGAGGCCTCTCCGGCTCCACCACCATCAACATAACTCTGACAGACGTCAACGACAACCCGCCCATGTTTCCCCAAAAAAATTACCAGCTGTACGTCCCCGAATCAGCTCAAGTAGGGAAACCGGTGGGGAAGATCAAAGCCAATGATGAGGACCTTGGCATCAATGCAGACATCAAGTACAGCATCATTAACTCAGAGGGGGCCAACACGTTCTCCATATCTACAGACAGGGACACGAGAGAGGGGATCATCAGCCTCAAAAAGCCTCTGAACTACGAGAGAAAGAAGACCTACACTCTCCACATTGAGGGGACGAATACACATATGGATCCTCGTTTTTCCTATCTTGGCTCTTTCAAAGACACCGCCACCCTCAAGATCACAGTTGGGGATGTGGACGAAGCTCCTGTGTTTTCTATAGATCATTACATCATGGATGTATATGAGAACTCACCGAGTGGCACAGAAGTGGGCGTCGTAACAGCTCGAGATCCTGACAGCAGGAACAGTCCTGTCAGGTACTTTTTGGACAGCAAAGAGGAAGGAGTAAGGTACTTCAGAATCGATGAAATCAGTGGACTTATACGGACGACGCAGCCTCTCGACAGAGAAGACATGGCTTGGCACAACATCACTGTGATGGCCTCGGAGGTTGACAACCCCAGCCTGCTCAGTCACGTTCCTGTTACCGTCCAGGTGCTGGACGTGAACGATAATCCGCCAGAAATAGCTACAGACGAGGAGGTCATTGTGTGTGAGAGCTCAAGGCCGGGGCAGGTGATCCAGACTGTCACAGCAGTGGATAAGGATGACTTTGCCAATGGACAGCGGTTTTCCTTTGCTTTGCCGAGCCAGCTACCAGTTAATCCCAACTTCACCCTGAAGGACAACGAAGACAGCACAGCCAGCATCATTGGCAGGCGGCGGCGTTTCAACCACCTGACCCAGGAGCTGTATGAGCTGCCCATTGTGGTGTGGGACGGTGGGGAGCCGTCGTTGAGCGGCACCAGCACCTTGACCCTCCGGGTGTGCCCATGCCAGCGCCACGGCAGGATCCGGATGTGCCAAGGCGAGGCGTTCCTCTCCTCGGCGGGTCTCAGCACGGGGGCTCTGATTGCCATCCTGCTGTGCATCGTCATCCTGCTGGCAATCGTGGTTCTCTTCGTCACACTGAGACGGAGCAAGAAAGAGCCCCTTATTATCTCCGAAGAGGACATCCGAGAGAACGTGGTCACCTACGACGACGAGGGCGGAGGCGAGGAGGACACCGAGGCCTTTGACATGATCGCCCTGCGCAACCCAGCCGCCGCCGAAGAGCTCAAGTTCCGGCGGGACGTTCGCCCAGAGGCGAGAAAACACTGCGCCACGCCCCGCAGCCGCCGGACCAAGGCGGTGGAGCTGGACGAGGTGGACGTGCACGAGTTCATCAAGCAGAGACTGGTGGAGGCCGACGTGGACACCAGCGTGCCGCCCTACGACTCCCTCCAGACCTACGCTTACGAGGGCCAGGGCTCACCCACGGGATCCATCAGCCCTTTAGACACTCCCGGGACACAATCAGAGCAGGATTATAACTATCTGGACGACTGGGGGCCTGAGTTCCAGAAACTGGCAGAACTCTACGGAGAGGCAGATTCAGATGTGACGACCTAGTCGGCGATTTCGCTCCTGTGCAAACCAAATCTGTTtgaaatacgtttttttttttcaaattttcagTGGACACTATAAACAAACAGAGATGCTTTCACACTGTTCTGGTGGTTTACGACTTTTACTGTTGAACTCAAAAgactgctatttttttttttttctttttcattttgtcgctttggattATTGGTCGTTCATCTGGAAgtattaaaacagattttaaGATGGAAGAACAACAATATGggggaaaaggaaaaggaaatttTCCTTGgtgtatattttttattgctCAATAAAGTCCTAAAATCCACATGAGTGGATATGTGAAAAA
>XM_039790845.1
gcTAACACATTTACAGAGgaAATCCAGAATGGCTTTCAGGATTAACCTCTGCACTTGGTAGAACTACCCAGAAGTTCACGTCTGTTTGCACAGCATCTCACAGCCTGGAAAATTCCATAATGTAAATGTatcttgcttgttttttttttctccattaaaCCTTCCGCTTTTGGCCATGAACCTTAGAGGATCTACCGGGACCGCTATTTCCTTAGTTTGGATATAGATTCCTCTTTTGCTTTGACTATTGCACAGGCCTGGAGCGGTGGCAAGTTGTGGCGGCGGCGGTGGTGGGAGGACCTTACCACTTTGGAACACGGGGATAACTTTTACAAAAGCACGCGCCACCATGAGGATATCCACCACCTCCTGTCTCTGTCCCTTTCTGGTCTGCCTCTGTTTCATCCAGAGGTGCTACGGGGCGGGCCACCACGTCCCCGCCAAAGTGCCCTCCAAGAACCAGACCAAACTGGCCAACGGGGAGACGGAAGTGCACCACAGGCCCAAGCGTGGCTGGATCTGGAACCAGTTCTTTGTTTTAGAAGAACACTTGGGACCAGATGCACAGTATGTGGGAAAGCTTCACTCAAACTCAGATAAAGGCGATGGATCCGTCAGGTACATTCTGAGCGGGGAAGGAGCTGGAACTATATTTATCATCGATGAAGTGACAGGAGATATTCATGCCACTAAGAGTCTGGATCGCGAAAGGAAAACACATTATGTCCTGCATGCACAAGCCTTGGACCGCTACACAGAGGAGGCGCTGGAACCAAAGTCGGAATTCATCATCAAAGTACAAGACATCAATGACAATGCTCCCAAATTTCCAGATGGACCCTTTGTAGCTACGGTGCCTGAGATGTCTGAAGTGGGCACTTCTGTGTTGCAAGTCACAGCGTCTGATGCTGACGATCCCACCTATGGAAACAGTGCCAGAATAGTCTACAGTATTCTACAAGGACAGCCATATTTCTCCGTCGACCCCAAAACAGGAATCATCAGGACTGCCTTATCTGACATGGACCGGGAAGCCAGAGAACATTACACCGTTGTTATCCAAGCCAAAGACATGGCAGGCCAGGTTGGAGGCCTCTCCGGCTCCACCACCATCAACATAACTCTGACAGACGTCAACGACAACCCGCCCATGTTTCCCCAAAAAAATTACCAGCTGTACGTCCCCGAATCAGCTCAAGTAGGGAAACCGGTGGGGAAGATCAAAGCCAATGATGAGGACCTTGGCATCAATGCAGACATCAAGTACAGCATCATTAACTCAGAGGGGGCCAACACGTTCTCCATATCTACAGACAGGGACACGAGAGAGGGGATCATCAGCCTCAAAAAGCCTCTGAACTACGAGAGAAAGAAGACCTACACTCTCCACATTGAGGGGACGAATACACATATGGATCCTCGTTTTTCCTATCTTGGCTCTTTCAAAGACACCGCCACCCTCAAGATCACAGTTGGGGATGTGGACGAAGCTCCTGTGTTTTCTATAGATCATTACATCATGGATGTATATGAGAACTCACCGAGTGGCACAGAAGTGGGCGTCGTAACAGCTCGAGATCCTGACAGCAGGAACAGTCCTGTCAGGTACTTTTTGGACAGCAAAGAGGAAGGAGTAAGGTACTTCAGAATCGATGAAATCAGTGGACTTATACGGACGACGCAGCCTCTCGACAGAGAAGACATGGCTTGGCACAACATCACTGTGATGGCCTCGGAGGTTGACAACCCCAGCCTGCTCAGTCACGTTCCTGTTACCGTCCAGGTGCTGGACGTGAACGATAATCCGCCAGAAATAGCTACAGACGAGGAGGTCATTGTGTGTGAGAGCTCAAGGCCGGGGCAGGTGATCCAGACTGTCACAGCAGTGGATAAGGATGACTTTGCCAATGGACAGCGGTTTTCCTTTGCTTTGCCGAGCCAGCTACCAGTTAATCCCAACTTCACCCTGAAGGACAACGAAGACAGCACAGCCAGCATCATTGGCAGGCGGCGGCGTTTCAACCACCTGACCCAGGAGCTGTATGAGCTGCCCATTGTGGTGTGGGACGGTGGGGAGCCGTCGTTGAGCGGCACCAGCACCTTGACCCTCCGGGTGTGCCCATGCCAGCGCCACGGCAGGATCCGGATGTGCCAAGGCGAGGCGTTCCTCTCCTCGGCGGGTCTCAGCACGGGGGCTCTGATTGCCATCCTGCTGTGCATCGTCATCCTGCTGGCAATCGTGGTTCTCTTCGTCACACTGAGACGGAGCAAGAAAGAGCCCCTTATTATCTCCGAAGAGGACATCCGAGAGAACGTGGTCACCTACGACGACGAGGGCGGAGGCGAGGAGGACACCGAGGCCTTTGACATGATCGCCCTGCGCAACCCAGCCGCCGCCGAAGAGCTCAAGTTCCGGCGGGACGTTCGCCCAGAGGCGAGAAAACACTGCGCCACGCCCCGCAGCCGCCGGACCAAGGCGGTGGAGCTGGACGAGGTGGACGTGCACGAGTTCATCAAGCAGAGACTGGTGGAGGCCGACGTGGACACCAGCGTGCCGCCCTACGACTCCCTCCAGACCTACGCTTACGAGGGCCAGGGCTCACCCACGGGATCCATCAGCCCTTTAGACACTCCCGGGACACAATCAGAGCAGGATTATAACTATCTGGACGACTGGGGGCCTGAGTTCCAGAAACTGGCAGAACTCTACGGAGAGGCAGATTCAGATGTGACGACCTAGTCGGCGATTTCGCTCCTGTGCAAACCAAATCTGTTtgaaatacgtttttttttttcaaattttcagTGGACACTATAAACAAACAGAGATGCTTTCACACTGTTCTGGTGGTTTACGACTTTTACTGTTGAACTCAAAAgactgctatttttttttttttctttttcattttgtcgctttggattATTGGTCGTTCATCTGGAAgtattaaaacagattttaaGATGGAAGAACAACAATATGggggaaaaggaaaaggaaatttTCCTTGgtgtatattttttattgctCAATAAAGTCCTAAAATCCACATGAGTGGATATGTGAAAAA

Function

symbol description
cdh18 Predicted to enable cadherin binding activity and calcium ion binding activity. Predicted to be involved in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules; cell morphogenesis; and cell-cell junction organization. Predicted to be located in plasma membrane. Predicted to be part of catenin complex. Predicted to be active in adherens junction.

NR:

description
PREDICTED: cadherin-18 isoform X1

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K06805 CDH18; cadherin 18, type 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039790843.1 True 3292 mRNA 0.51 12 23128644 23222054
XM_039790844.1 False 3189 mRNA 0.51 12 23128644 23308035
XM_039790845.1 False 3071 mRNA 0.51 12 23128644 23220282

Neighbor

gene id symbol gene type direction distance location
LOC120552718 NA coding downstream 57747 23068720 ~ 23070897 (-)
LOC120552717 LOC104965202,LOC103365305 coding downstream 207388 22912562 ~ 22921256 (-)
LOC120552328 epc1,LOC102784371,LOC100694393 coding downstream 240413 22841027 ~ 22888231 (-)
LOC120552530 LOC103365300 coding downstream 326895 22697027 ~ 22801749 (-)
ggh ggh,LOC100704938,LOC108234706,LOC101480685 coding downstream 431780 22691030 ~ 22696864 (-)
cdh10a LOC102783614,LOC100705471,LOC101477094,LOC102310056,LOC102199257 coding upstream 325648 23633683 ~ 23666857 (-)
drosha drosha coding upstream 885343 24193378 ~ 24297851 (-)
mc4r LOC104930272,LOC103365861,LOC104961440 coding upstream 1049574 24357609 ~ 24361216 (-)
rnf152 rnf152 coding upstream 1352076 24660111 ~ 24723840 (-)
LOC120552289 NA coding upstream 1456626 24764661 ~ 24770211 (-)
G221950 NA non-coding downstream 8356 23119778 ~ 23120288 (-)
LOC120552653 NA non-coding downstream 56813 23070954 ~ 23071831 (-)
G221933 NA non-coding downstream 88510 23039849 ~ 23040134 (-)
G221928 NA non-coding downstream 146293 22981964 ~ 22982351 (-)
G221926 NA non-coding downstream 167984 22959366 ~ 22960660 (-)
G221962 NA non-coding upstream 6653 23314688 ~ 23314893 (-)
G221999 NA non-coding upstream 364825 23672860 ~ 23673189 (-)
G222001 NA non-coding upstream 383378 23691413 ~ 23691962 (-)
G222012 NA non-coding upstream 515318 23823353 ~ 23823678 (-)
G222037 LOC105920180,LOC107100491,LOC106522295,LOC107383085 non-coding upstream 844444 24152479 ~ 24152762 (-)
smpx smpx other downstream 910263 22202767 ~ 22218381 (-)
LOC120552473 NA other downstream 1008033 22114382 ~ 22120611 (-)
tfr1b NA other downstream 1117558 21990017 ~ 22011086 (-)
rbis LOC101064519,LOC103367294,LOC102312013 other downstream 1906977 21217680 ~ 21221667 (-)
LOC120552536 fbxl7 other downstream 2265956 20835178 ~ 20862688 (-)
LOC120552322 cdh12,LOC108234660,LOC100695194,LOC101477368 other upstream 93508 23401543 ~ 23519526 (-)
avl9 avl9 other upstream 1488554 24796589 ~ 24854888 (-)
msl2b msl2,LOC102304425,LOC102778660 other upstream 1655382 24963417 ~ 24968106 (-)
LOC120552232 LOC103371349 other upstream 1727849 25035884 ~ 25086902 (-)
LOC120552299 NA other upstream 2248438 25556473 ~ 25562540 (-)

Expression


Co-expression Network