vps41 (vps41)


Basic Information

Item Value
gene id vps41
gene name vps41
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 19196583 ~ 19213652 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039790862.1
GGCTTTGTATTGTCATGTGATTTAACTTATGACAGAGGGACCTGGCTTCGACAACAAACATCACTTTGTTGTAGAGTGGATATTTTTGACAAGCAAACCCAATTGCGATATTGTGGACGCTTAACATGTATTCTCTGAAAACGTATTGAGATATTTTATATAACTATTCTGCTTGGATACAGCGAATAACGATGGCGGATGTGGAGGAGCAGGGCAGAAAACAAAGTGAGGAATTCACAGATGAGTCTGAGGAGGAGGACAGCGAGGAGGAGCCCAAGCTGAAGTATGAGAGGCTCTCCAATGGGGTGACAGAAATCCTCCAGAAGGATGCAGCCAGCTGTATGACTGTCCATGACAAGTTTCTTGCCCTAGGTACTCATTTTGGGAAGGTCTTCCTGCTGGACATCCAAGGAAATGTAACTCAGAAGTTTGAAATTAGTTCAGTGAAGATCAACCAGATCAGTCTGGATGAAAGTGGAGAGCATGTGGGCATTTGCTCCGAGGATGGGAAGGTTCAAGTGTTTGGTCTCTATACAAGAGAGGGCTTCCATGAGAACTTTGACTGTCCCATCAAAGTGGTAGCATTACACCCTCAGTTCACCAGATCAAACTACAAACAGTTTGTTACTGGGGGCAACAAGCTGCTCCTGTATGAAAGAAACTGGTTGAATCGCTGGAAGACGTCTGTGCTACATGAAGGCGAGGGCTCAATCACTGCAATCCAGTGGAGAGCTAACCTCATTGCCTGGGCCAACAATGTGGGTGTTAAAATCTATGATATTGGTACAAAACAGCGGATCACAAACGTGCTGCGGGATAATGTCAGTCTGAGGCCTGACATGTACCCTTGCAGCCTGTGTTGGAAGGACAACAGCTCTCTCATTGTTGGCTGGGGTTCTTCCATTAAGATTTGTGttgtgaaagaaagaaatcctACTGAAATGAGAGATCTGCCCAGCCGCTATGTGGAAATAGTGTCTGCATTTGAGACCGAGTTCTTCATCAGTGGCCTGGCCCCGCTGGCAGATCAGCTTGTCACCCTTTACTTTGTGAAGGAGAACTCTGATCACATGgttGAAGAGTTCCGTGCGCGGCCTCGTCTCGACATCATCCAGCCTCTCCCTGAGAGCTGCGAGGAGATCTCTTCAGACGCGCTGACCGTGCGCAACTTCCAAGACAACGAGTGCAGAGACTACCGCCTCGAACATTCTGAGGGAGAGTCGCTCTTCTACATCATCAGTCCCAAAGACATCGTCGTGGCCAAGGAGCGAGACCAGGATGACCATATCGATTGGCTACTCGAAAAGAAGAAATATGAGGAGGCTCTGATGGCTGCAGAGATCAGTTTCAAAAACATCAAGAGACACGACGTTCAGAAAATTGGGATGGCTTACATCAATCACTTAGTGGAAAAAGGAGACTATGACAGTGCTGcgagGAAGTGTCAAAAGGTTCTTGGAAAAAACATGGAACTATGGGAAAATGAAGTGTACAGGTTTAAGACCATCGGACAGTTGAAGGCCATCAGTCAGTATTTGCCCAGAGGGGATCTGCGTCTCAGACCGGCCATTTATGAAATGATCTTGCATGACTTTCTCAAAACTGACTATGAGGGTTTTGCCACACTGATCCGGGAATGGCCTGGAGAGCTTTATAATAACATGGCCATTGTTCAGGCAGTCAGCGATCACCTGAAGAGGGACCCCACCAACAGAACCTTGCTCACCACGTTGGCTGAACTGTACACGTACGACCAGCGGTACGACAGAGCTTTAGAAATCTACCTGAGGCTGAGGCACAAAGATGTTTACCAGCTGATCCACAAACACAACCTTTTCTCCTCCATAGAGGACAAGATCGTCCTCCTCATGGACTTTGACAAGGAGAAAGCTGTCGACATGCTTCTGGACAATGAAGATAAGCTATCAACAGACAGGGTGGTGGAAGAACTAGCAGACAGGCCCGAGCTTCTGCATGTGTACCTCCATAAACTGTTCAAGCGGGACCACCACAAAGGCCAAAAATATCACGAGAGACAGATTGGTCTGTATGCCGAGTATGACCGGCCAAATCTCTTACCTTTCCTGAGAGATAGCACACACTGCCCACTTGAAAAGGCTCTCGAGGTTTGTCAGCAGAGGAACTTTGTAGAGGAGACTGTCTTCCTGCTCAGCAGGATGGGGAACTGCAGACGAGCGCTGCAGATGATCatggaggagctggaggacgTGGACAAGGCCATAGAGTTTGCCAAAGATCAGGACGATGCAGAGCTCTGGGAGGATCTCATCTCTTACTCCATTGACAAACCACCATTCATCACCGGCCTCCTGAATAACATTGGTACTCATGTGGATCCCATTCTGCTCATCCATCGCATTAAGGAGGGCATGGAGATCCCAAACCTCAGAGATTCACTAGTGAAAATCCTCCAGGACTACAATCTGCAGATCCTTCTGAGGGAAGGATGTAAGAAGATCCTGGTGGCCgactccctctctctgctccaGAAGATGCACCGAACACAGATGAGAGGAGTCCGGGTCGACGAGGAGAACATTTGCGAATCGTGTCATGCTACAATATTACCATCAGACATGGCCAAACCCTTCAGTGTGGTGGTGTTTCACTGCAGACACATGTTTCACAAGGAATGTTTACCATCTTCAGGAACAATTCCTGGGGTGCAGTTTTGTAACATCTGCAGTGCGAAGAAGCGCGGGCCAGGAAGTGGAATCCTGGAGATGAAGAAGTAAACGGGGATCTACGCACTCACAATTTTATTATTGATGCTTTTACGCCCCCTCACCCCTCCATGTTGCTTTCCATTTACTGTCATTTATCAATGAATATCACCTTCCCTCAGTCACTGAACTGTACACTtgcagaaataaaaataaaaacatgtatatATTGGA

Function

symbol description
vps41 Predicted to enable metal ion binding activity. Predicted to be involved in several processes, including cellular response to starvation; endosomal vesicle fusion; and protein targeting to vacuole. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in Golgi apparatus; cytoplasmic vesicle; and lysosome. Predicted to be part of HOPS complex. Predicted to be active in late endosome. Orthologous to human VPS41 (VPS41 subunit of HOPS complex).

NR:

description
vacuolar protein sorting-associated protein 41 homolog

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K20184 VPS41; vacuolar protein sorting-associated protein 41

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039790862.1 True 2918 mRNA 0.47 28 19196583 19213652

Neighbor

gene id symbol gene type direction distance location
LOC120552661 esco1,LOC102306999,LOC105019393,LOC107732058,LOC107599690 coding downstream 1060 19182050 ~ 19195523 (-)
lypla1 lypla1 coding downstream 77601 19112196 ~ 19118982 (-)
LOC120552400 NA coding downstream 125967 19069163 ~ 19070616 (-)
LOC120552750 oprk1,LOC104949654,LOC103363868 coding downstream 131007 19059707 ~ 19065576 (-)
chmp5b chmp5,LOC104949656,LOC108230516 coding downstream 138507 19054260 ~ 19058076 (-)
ankha ankh coding upstream 101931 19315583 ~ 19330554 (-)
fam49bb fam49b,LOC104954579,LOC105915818,LOC103377397,LOC107085391 coding upstream 262228 19475880 ~ 19514037 (-)
asap1b asap1 coding upstream 304878 19518530 ~ 19585448 (-)
chpf2 chpf2 coding upstream 426204 19639856 ~ 19648801 (-)
si:ch73-173p19.1 LOC103363515,LOC104954586 coding upstream 445237 19658889 ~ 19666720 (-)
G220972 NA non-coding downstream 153367 19040265 ~ 19043216 (-)
G220893 NA non-coding downstream 366598 18829751 ~ 18829985 (-)
G220888 NA non-coding downstream 380205 18815906 ~ 18816378 (-)
G220860 NA non-coding downstream 455967 18740417 ~ 18740616 (-)
G220839 zfand1 non-coding downstream 573198 18622691 ~ 18623385 (-)
LOC120552156 NA non-coding upstream 103002 19316654 ~ 19317227 (-)
G221086 NA non-coding upstream 158939 19372591 ~ 19374516 (-)
G221088 NA non-coding upstream 223314 19436966 ~ 19439539 (-)
G221090 NA non-coding upstream 232393 19446045 ~ 19446294 (-)
G221095 LOC102309907,LOC101472733,LOC102788342,LOC101061645,LOC104929597 non-coding upstream 303720 19517372 ~ 19544392 (-)
mettl4 mettl4 other downstream 247088 18938913 ~ 18949495 (-)
LOC120552352 colec12,LOC102798044 other downstream 385639 18772977 ~ 18810944 (-)
G220833 NA other downstream 498613 18610236 ~ 18697970 (-)
si:ch73-174h16.4 LOC103364270,LOC104947970 other downstream 712807 18426762 ~ 18483776 (-)
G220412 csrnp1,LOC104937158,LOC102793366 other downstream 2321283 16874649 ~ 16875300 (-)
G221048 ankh other upstream 101939 19315591 ~ 19326894 (-)
LOC120552536 fbxl7 other upstream 1621526 20835178 ~ 20862688 (-)
rbis LOC101064519,LOC103367294,LOC102312013 other upstream 2004028 21217680 ~ 21221667 (-)
tfr1b NA other upstream 2776365 21990017 ~ 22011086 (-)
LOC120552473 NA other upstream 2900730 22114382 ~ 22120611 (-)

Expression


Co-expression Network