vstm2a (vstm2a)


Basic Information

Item Value
gene id vstm2a
gene name vstm2a
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 294311 ~ 401826 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039790874.1
GTGACAGTAAGGGGCCGGATGAGGAGCCGATTTGCAGAGGTGTGGAGTGTGTGGATACCACAGTGATCCACTAGACTGACGTCTCTCCGGTAGCGCAGACGAAGACCGCAGCACGGTTATTTTACAGACTTCAGTACAGGCAAGCAGTCGACTGTCTCTCCCGCAGAGATACAGAGAAGGAAAATAGAACTTCACCAACGACAACGACTGTAGTTTTGCAGCATGTTCCACCGTCGGCAATCTCCGTTTAAACATACTCGCCCAGCAACTGTTTGATTTTGCTGGTGTCTTGgcaattcttttttctttttctttgtggaAACATTCGCCCTTTTTCCCTTTTTGCGGCtgatgtaaaaaagaaaacacctcTATATTGGAAGGATGTGGACCTCTCATGATACTGTTGGATTTGTTTTCTTAGCCGGGTTTTGTGTGCAAATCGGATTCTCCTTTGAAGGTCGCTTCACGGATCTGCCCTCCAACATGACGGTTAAAGAAGGACAAAACATAGAAATGGCGTGTGCTTTCCAGAGCGGTACCGCGTCGGTGTATTTGGAGATCCAGTGGTGGTTCGTGAAAGAGCCGGAACCCACTGACAGCGAGGAGGAGGTCGATGTGGAAGAGATGGAGATGATACCAGAGCCTGATCCTGATGACGAGGGGACAAAAATAAGTACAGTGAAAGTCCAGGGCAACGACATCTCACACAAGCTGCAGATCTCAAGAGTCGGCAAGAGTGACGAAGGACTCTACGAGTGCCGGGTGACACGAGCTAACTACGGAGAGATTGTGGAGTACAAAGCTCAAGCCTGGCTGAAGGTTAATGCCACGGCCAGGCCTCGACGACCACTGCTGCCTCCCAAGAAAAGCTCCCCGCTGCACCTCACAGACAAGAAGCCAAGAAAGTCCAACTCACCTCTGGGCCAGGACAGCATGAGTTCAGACCAGAGAGTggcctccacctccacctctcaCACATCCTCCAATACAGCAAAACACAACCCCAGCTCAGGGACAAGAATATCATCCACCTATGGGCTGGCTGTCCTCCTGGCGTGTGGTTTGGTGAGGGATGCCTTGTTATAATTTCAAgaactgaaatggttttcacccagatctactctctctctgtttgctcTCAAAGTGAACAAGAAAATTGTCTGTTCTATCCCCATCCCcgccctcccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccatgtgaaCAGCACAGCTGGCCCTCATTTCCCTGCAACTACTGCTCTTGCACCCAGCACATTGTTATTAGCCACTGCAAACACCAGTCACCTTTAAACCGGTTGGATTACCTTTTGTACAGAAGTCGACTCGACACCATCCGAGGTGCAATGCTCAGTGTGAAAACGGACTCTGTATCTTGTTGGATAACTCTCATGGAAGACTGACTTTCTTATGGTTTCGCTGTTCCAGTTCATGTGTTCATTGCTCAAAAgtgaacaagaaaaaaggagTATCTATATTTGTGTAATACATATGATTCTAGATATGTCTGTTTTATTTGAGACACCTAGAATTATTGTATGTGCTGTATACATAGCTGAAACTCACCATATTGACCACGAAACTGCATCGTAAAGGCATTCTGGCCCTCTCAAAGAAAttacagaaaagaaaagtgatTAAAGTACATGTTAATTTAGACTGTTAACATTAACCATAAGGTTAAAAGGGGTTAAGATACTCATTTTTCCGGAACTGTATTGGCCATCTAAATGATCTAACGTGCATACGTTTACATCTTGTTAGTGACACACACAGGTGTGCATGCGTATTAGTCTGATTGGCTTAAAAGAGGGGGATATAAGTTTATTTGCGCTACATAAGTCAACACTCTGGAGTTCAGTGTTACAGTAGGTTGAATTTAGCTTTATTTTAATGTGCTAGCtttgatgtgaaaaaaaaaacattgtcccTTGtcgttttcatttttcattgcatcCTCCAGTAGGAATAAAAAGGATGTCACAATTTATGAGTCATTGAATATCCTGATATGTGACCATTGGATAATTAATTTTAATCGACCTGCACCATTTTCAAATGGCATGCTTGCTTCAGTTGTTGTGCACCTCCCTAGTATTTCTCATTATTACAGAGAATGAATGAGTATTTACACACTTTGGATCATGAGTATTGCTAGTTTTTACTGTTTTGAttccaacaaacaaacacacacatttgcaggtAGATGTTTGAGTGACTAGATGAGATGCAGTACAACACGGAGAGTAGACTTGCTTATCATTAACATTATATATGACCCATGTTTGGGTGAAATTGGTTACTTTTGTTGTAATCTTCTCTCTTATATCTTACAGTATTATATTTTTAGCTTTATTTTCAGATAATATATCATAGAGATTTTTATCCACGCAGAGCATTTATGAGCAAAACGCTTTGACAATCTGACTCAAACACGGACAAAGGTGTTTTTTTGGTTTCATAGTTCAACAACAGATACAGTATAACCTCTAAAATAAATGGGATTTCTTTTGTTAACTTTTGAGCTAAAAAGGAAATTGTGAAGCATCTATCAGAAATGCAGATGTTCCAATTCAAACTGAAATATTTATGAATAATAATTAATGAATAATTGTCTCAAGAATCATATTCTAAGTAAATGTTATCCACCCTGAGGATCATGCTGCCAGAGTGCAGCAGTTGCCCTGCAATGagatcaatattttattttggtagACACTGACTCCGAAACCCATACTATTTTTCTGCTCAGTTAATTCCCAAAATGTACACCAACTTAAGCTAACATGATGCATGATTATGTAGTTTGTCATATGTTGTATGGTATAATCTAACATTCATGCATAACATGTAATTGCCAACAATTACTTTGCCGTGTgttttaaaaagcaaaataCTCACCTCCCTTCAAGCTTTTATTCCACTTTGCAGACAAAGTAAAAATCCCCCTGTATAGTTGTACTGCATTCCCAAAGAACTGTGGAGGGAAACTTGTTGATTCAGCACCGAAGTCCAAAGGCTGGCAGTCCTTGTCATGCTTTGGGATCAGACCTGACATCTACTGATCAGCAGCTTCCAGCCTGGCTACAAGATGTGTGGGCGATAGAGGGTACCCTGTCTAATTCCTCAAATTCCAAATAGCTTCAGGGTGTATTTGGACAGTTAATCTAGCATcactgtcatatatatatatgccactCTGCTGCGACTGGAAATCGATTGCTGTGTTTTGAAATGAGAACATGTTATGTAATATGATCCAGAATGTTTAGTTTTCAGAAAACATACAGCTTATTTTAATGTAGAATGGGATGTTGATTCTGTTGGAAAAGTGCACCAGCACTTTGAAGAGTGTGCACAGTTTGAGTGGACAGCTTGTCCAACCCTCATGTAAAAAGTTACAGATGTGTACAACTTGTAAATGAAATAATCAGCAtgttaacgttttttttttttttatcaatttaaaaAGGCAAAGGCCAGTGATGTTCTGTACTTGTAACAATGGTGTCATGTACTCATATTCAAGTGTTAACAAGTCCAAAGTGGGTTTTCATCTCCTCAAAATGAACTTGGGTAAATgtatatgacaaaaaaaatatctatatatatattagaaacATCTCCTTTTATAAAGCTTTCATCCTAATCTAGGGGACTCACTTGACTGTGGGTCCTTGCAACATATTGAATAACAAAGAAGGAGATATTGGAGCGAAGATTGATTTGATATTGTGATTGGAGTGATGAAAAATGATGCTTAGTAAAAAAACTGAGTCATGAGTTTGGGTTGTGATGGAGGCTGAATTGCTCACGAGCAACAAGATCTCTGTTACCAAAGAGGAGAACAGTTCACAATGACGGCTACAGCAGCAGTTCTTTCATCCAGGATGTTATTTCATAAACACAGCCATACTTCTGTTTGATATGCCACGCTACCCATCCACtctagatgtatttgtttattctAATGTATTTCATTTCAATGCGGTCCTGTCTGTTTGTTGAGCTGTCAAAAATTCTGATGAATTatagtttcttttctttcgtATTGTGTGAGGCTTCTGTACTGGAACATTGCAACAGTTTGTATTATAATGACGATATCAgaataatatttaaataaaccatTTTCACAGATGAAATTCAAA

Function

symbol description
vstm2a Predicted to enable identical protein binding activity. Involved in several processes, including positive regulation of brown fat cell differentiation; positive regulation of lipid storage; and positive regulation of white fat cell proliferation. Predicted to be located in extracellular region. Predicted to be integral component of membrane.

NR:

description
PREDICTED: V-set and transmembrane domain-containing protein 2A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039790874.1 True 4222 mRNA 0.40 5 294311 401826

Neighbor

gene id symbol gene type direction distance location
LOC120551945 NA coding upstream 796783 1198609 ~ 1200210 (-)
LOC120551939 NA coding upstream 919612 1321438 ~ 1332410 (-)
ift74 ift74 coding upstream 1105910 1507736 ~ 1536190 (-)
kcnh2b kcnh2,LOC102205662,LOC101467662 coding upstream 1421217 1823043 ~ 2201660 (-)
zeb1b zeb1,LOC102790219 coding upstream 2399740 2801566 ~ 2860283 (-)
G217221 NA non-coding downstream 80254 213858 ~ 214057 (-)
G217219 NA non-coding downstream 135746 157558 ~ 158565 (-)
LOC120551975 NA non-coding downstream 191314 102140 ~ 102997 (-)
LOC120551974 NA non-coding downstream 192178 79571 ~ 102133 (-)
LOC120552669 LOC101470920,LOC106534500 non-coding downstream 256185 35892 ~ 38126 (-)
G217229 NA non-coding upstream 7572 409398 ~ 410145 (-)
G217231 NA non-coding upstream 45958 447784 ~ 448010 (-)
G217232 NA non-coding upstream 98935 500761 ~ 501338 (-)
G217238 NA non-coding upstream 154323 556149 ~ 563293 (-)
G217240 NA non-coding upstream 164840 566666 ~ 577547 (-)
si:dkey-225n22.4 LOC104949920,LOC103365391 other upstream 953431 1355257 ~ 1448275 (-)
LOC120552169 LOC102294047,LOC102205018 other upstream 1256346 1658172 ~ 1811130 (-)
scospondin sspo,LOC104950179 other upstream 1812885 2214711 ~ 2419065 (-)
svila svil other upstream 2587100 2988926 ~ 3136214 (-)
LOC120552696 NA other upstream 2913592 3315418 ~ 3343705 (-)

Expression


Co-expression Network