tmtopsb (LOC100702425,LOC101487167,LOC102300731,LOC104945569,LOC102206266,LOC103366381)


Basic Information

Item Value
gene id tmtopsb
gene name LOC100702425,LOC101487167,LOC102300731,LOC104945569,LOC102206266,LOC103366381
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 21876164 ~ 21917655 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039790877.1
GATAAAAGCTCCGGCGCACGGCACGCTGGACCGGTGGCCGCGCAAGAAAAAGAGCACACCTCTCCCGACCCGGAGCGCACGGTGCGGTGCGGATCGGTCTCTGCTCTCTGAATCCTTATTGACTTATTCGCCAAGTAGCTCTCGTGGACTGGATAGCCCAGCGTTTAcaatttatttcttcttttatttaaagCTGTCATGTGAGCGCACGGCGCAACAGCTGGACTCCCCCGTGCGCCTTCGCTTCTCCAGATGGGTTGACAGAGTCAACAGCACCCAGAGACCCGATGGTGCCGTCCCGCGGTGCAAACTTCGGGCAGGTGCAAACTTGGCGGTTTTGCCCGGTATGATAGTTTGCAACGTGAGCCTGAGTTGTGCGCACTGTCCCGGTGGAGTAGCCGGTGGCACGGCGGTGACGGACGCATACGAAGAGGTGTCCGGttctctccctcctccgtcCCTGACCCCGAAGGGGCACCTGGTGGTGGCGGTGTGCCTCGGCTTCATCGGCACCTTCGGGTTCCTCAATAACCTCCTGGTGCTCGCGCTGTTTTGCCGGTACCGTTCTCTGCGAACGCCCATAAACCTCCTGCTGGTGAGCATCTCTGCTAGCGACCTGCTGGTCTGCGTGCTGGGCACCCCGTTCAGCTTCGCGGCCAGCACCCAGGGACGCTGGCTGATCGGACGCGAAGGCTGCATATGGTATGGGTtcgttaactcatgtttagGCATCGTCTCCCTGATCTCCCTGGCCGTCCTGTCCTATGAGCGTTACTTCACCATGATGAAGCCCACTATAGCCGACAACAGAGACTTCGGCCCAGCACTGGGAGGGATCTGCTTCTCCTGGCTCTACTCTGTGGCCTGGACTGTACCTCCGCTACTGGGCTGGAGCAGATACGGGCCCGAGGGTCCAGGCACCACCTGCTCAGTGGACTGGAAGACCCAGACGGCAAACAATATCTCCTACATCGTCTGCCTGTTCATCTTCTGCCTGGTCCTGCCGTTCGGCGTCATCCTCTACTCCTATGGAATGTTGCTGCACGCCATCCGACAGGTCCGCAGAGGGAGCTCAGTGGTTACCCGCCGCAGAGACCAGCGGGTGCTGGTGATGGTGGTCACCATGGTGGTGTGCTACCTGGTCTGCTGGCTGCCCTACGGAGTAGCTGCTCTGCTCGCAACCTTCGGCCCTCATGGCCTTTTGACCCCGGAGGCGAGCATCACGCCGTCACTGCTGGCCAAGTTCTCCACTGTCATCAACCCTGTTATCTATATATTCATGAACAAACAGTTCTACAGGTGTTTCAGGGCGTTCCTTAACTGCTCCGCCACCGAGCCACCCTCCACCTCAAAGACATTTTCACGGCCGACCAAGACGCTCCGCACCGTCCGCCAGAAGAAGGAATGTCACGTGTCCGATCCTGCCCCCTCTTCCGCCCTCCCCACGCCCAACTCCATCCACGAGTCCCCGCAGGGAGCCAATCAAGTGGCTCCGTCTGCATCGAATCGACACTCTGCTGCTTCACACACCCCTACTGCTTACACCCCCAAACCCAAACTGATTCTGGTGGCTCACTACagggaataaaaacaaaaacaagagctGAAGGTTTACAGAAAAAGTATAAGGGAGCGGGGCGCAGGTCTCCAATTAACAACCAAATCCTCTTAATAGTGAAAAAAGTCGCAGTGGGAGTCTTAAATACAAACTGGAACATTTTTAATCCCAGAACACATTATTATTGCTCTGTGAAGACGGCAAACAGGGATACACACAAAATGCCAGTCTCATCCTGTTTACCACAGGCACTGCATACACAGCAGTATTATAGGGCTATGCATAGTGCTTCAAGTTAAGATTACACATGAAAAAAGCCACATAAGTAGGTGAAGCTTTTTGCTTGTATTGATGAAGTATCTTTGTTACACAACTAAATAGCGTTCTTTCTTTTCAGGAACAATTTGAAGAAGCACAGCGTTCTTTGGCGGAGATTTCATAAATTGTTTCGTGTTTTTTTGTAAACGGGGCCATGAGATATTTTGTTGGCTCAAGTGTGTAGCTACCGTTAGCAGGattattcttattattctttctttttctgcgATAATTCGGTTCAAGAACAGGGTAAGCATTTTTTCATGACACCATTTCCATGCCTGATATTTGAGGATTCTATACAGAGTATTAAATATTTGTTGAACATTTTTATGCAATTTAGAACTTAGAAGGTTTCTATTATGCCTTTATTTACACTTAGCTGTACGTAGGCCCTCTGTCTGTTATGAAAGCCTTTAATAGGGACATTTCACCATGTTATGAGGGATATTTGAGTCGTCTTGTTGTTTCTCTCCATTTAGTGGAAACATGGttttgtgttgtcttgtgttttcttttgcttaTGTAACATAAATGAAATCATGTCACAGA
>XM_039790878.1
TAGCTAACTTGAaaaatgatcgattttatactCGAGCATAGGTTTGAACCCTTTGGAGGAGAAACTGGAATTTAAACGCCTTGGTGCCCACCAACCTCGGGATGTTGTCATCACTCTAACTGCTGGTAAAAGTAACCGCGGTTAAACGTGAAGTGGTTAGCTTACAAAAATAAGTCAAGTTTGCCCAGAGGCAGAACCGCCGCGTCACCTTTCTCTTTAGTGAGCCCTCAGCCTTGGCTGTCATGTGAGCGCACGGCGCAACAGCTGGACTCCCCCGTGCGCCTTCGCTTCTCCAGATGGGTTGACAGAGTCAACAGCACCCAGAGACCCGATGGTGCCGTCCCGCGGTGCAAACTTCGGGCAGGTGCAAACTTGGCGGTTTTGCCCGGTATGATAGTTTGCAACGTGAGCCTGAGTTGTGCGCACTGTCCCGGTGGAGTAGCCGGTGGCACGGCGGTGACGGACGCATACGAAGAGGTGTCCGGttctctccctcctccgtcCCTGACCCCGAAGGGGCACCTGGTGGTGGCGGTGTGCCTCGGCTTCATCGGCACCTTCGGGTTCCTCAATAACCTCCTGGTGCTCGCGCTGTTTTGCCGGTACCGTTCTCTGCGAACGCCCATAAACCTCCTGCTGGTGAGCATCTCTGCTAGCGACCTGCTGGTCTGCGTGCTGGGCACCCCGTTCAGCTTCGCGGCCAGCACCCAGGGACGCTGGCTGATCGGACGCGAAGGCTGCATATGGTATGGGTtcgttaactcatgtttagGCATCGTCTCCCTGATCTCCCTGGCCGTCCTGTCCTATGAGCGTTACTTCACCATGATGAAGCCCACTATAGCCGACAACAGAGACTTCGGCCCAGCACTGGGAGGGATCTGCTTCTCCTGGCTCTACTCTGTGGCCTGGACTGTACCTCCGCTACTGGGCTGGAGCAGATACGGGCCCGAGGGTCCAGGCACCACCTGCTCAGTGGACTGGAAGACCCAGACGGCAAACAATATCTCCTACATCGTCTGCCTGTTCATCTTCTGCCTGGTCCTGCCGTTCGGCGTCATCCTCTACTCCTATGGAATGTTGCTGCACGCCATCCGACAGGTCCGCAGAGGGAGCTCAGTGGTTACCCGCCGCAGAGACCAGCGGGTGCTGGTGATGGTGGTCACCATGGTGGTGTGCTACCTGGTCTGCTGGCTGCCCTACGGAGTAGCTGCTCTGCTCGCAACCTTCGGCCCTCATGGCCTTTTGACCCCGGAGGCGAGCATCACGCCGTCACTGCTGGCCAAGTTCTCCACTGTCATCAACCCTGTTATCTATATATTCATGAACAAACAGTTCTACAGGTGTTTCAGGGCGTTCCTTAACTGCTCCGCCACCGAGCCACCCTCCACCTCAAAGACATTTTCACGGCCGACCAAGACGCTCCGCACCGTCCGCCAGAAGAAGGAATGTCACGTGTCCGATCCTGCCCCCTCTTCCGCCCTCCCCACGCCCAACTCCATCCACGAGTCCCCGCAGGGAGCCAATCAAGTGGCTCCGTCTGCATCGAATCGACACTCTGCTGCTTCACACACCCCTACTGCTTACACCCCCAAACCCAAACTGATTCTGGTGGCTCACTACagggaataaaaacaaaaacaagagctGAAGGTTTACAGAAAAAGTATAAGGGAGCGGGGCGCAGGTCTCCAATTAACAACCAAATCCTCTTAATAGTGAAAAAAGTCGCAGTGGGAGTCTTAAATACAAACTGGAACATTTTTAATCCCAGAACACATTATTATTGCTCTGTGAAGACGGCAAACAGGGATACACACAAAATGCCAGTCTCATCCTGTTTACCACAGGCACTGCATACACAGCAGTATTATAGGGCTATGCATAGTGCTTCAAGTTAAGATTACACATGAAAAAAGCCACATAAGTAGGTGAAGCTTTTTGCTTGTATTGATGAAGTATCTTTGTTACACAACTAAATAGCGTTCTTTCTTTTCAGGAACAATTTGAAGAAGCACAGCGTTCTTTGGCGGAGATTTCATAAATTGTTTCGTGTTTTTTTGTAAACGGGGCCATGAGATATTTTGTTGGCTCAAGTGTGTAGCTACCGTTAGCAGGattattcttattattctttctttttctgcgATAATTCGGTTCAAGAACAGGGTAAGCATTTTTTCATGACACCATTTCCATGCCTGATATTTGAGGATTCTATACAGAGTATTAAATATTTGTTGAACATTTTTATGCAATTTAGAACTTAGAAGGTTTCTATTATGCCTTTATTTACACTTAGCTGTACGTAGGCCCTCTGTCTGTTATGAAAGCCTTTAATAGGGACATTTCACCATGTTATGAGGGATATTTGAGTCGTCTTGTTGTTTCTCTCCATTTAGTGGAAACATGGttttgtgttgtcttgtgttttcttttgcttaTGTAACATAAATGAAATCATGTCACAGA

Function

NR:

description
PREDICTED: pinopsin isoform X1

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039790877.1 False 2428 mRNA 0.51 4 21876164 21916040
XM_039790878.1 True 2472 mRNA 0.50 5 21876164 21917655

Neighbor

gene id symbol gene type direction distance location
LOC120552274 NA coding downstream 156659 21716547 ~ 21719505 (-)
LOC120552272 thnsl1 coding downstream 164548 21706905 ~ 21711616 (-)
ptchd3a NA coding downstream 176121 21693431 ~ 21700043 (-)
gpr158a gpr158 coding downstream 186230 21604715 ~ 21689934 (-)
LOC120552336 NA coding downstream 277408 21590944 ~ 21598756 (-)
tnk2a LOC103363574 coding upstream 35990 21953645 ~ 21991347 (-)
LOC120551932 klhl34 coding upstream 277581 22195236 ~ 22200046 (-)
LOC120552124 NA coding upstream 762036 22679691 ~ 22688402 (-)
ggh ggh,LOC100704938,LOC108234706,LOC101480685 coding upstream 773375 22691030 ~ 22696864 (-)
LOC120552530 LOC103365300 coding upstream 779372 22697027 ~ 22801749 (-)
G221712 LOC104936438,LOC103366385 non-coding downstream 43280 21832156 ~ 21832884 (-)
G221708 arhgap21 non-coding downstream 60441 21814496 ~ 21815723 (-)
G221695 NA non-coding downstream 144677 21731287 ~ 21731487 (-)
G221616 NA non-coding downstream 458157 21415951 ~ 21418007 (-)
G221604 abi1 non-coding downstream 503473 21345698 ~ 21372691 (-)
G221768 NA non-coding upstream 26715 21944370 ~ 21944690 (-)
G221793 NA non-coding upstream 173886 22091541 ~ 22091753 (-)
G221832 NA non-coding upstream 306234 22223889 ~ 22246053 (-)
G221837 NA non-coding upstream 326152 22243807 ~ 22299575 (-)
G221843 ptchd1 non-coding upstream 382763 22300418 ~ 22301215 (-)
rbis LOC101064519,LOC103367294,LOC102312013 other downstream 654497 21217680 ~ 21221667 (-)
LOC120552536 fbxl7 other downstream 1013476 20835178 ~ 20862688 (-)
G221048 ankh other downstream 2549270 19315591 ~ 19326894 (-)
mettl4 mettl4 other downstream 2926669 18938913 ~ 18949495 (-)
LOC120552352 colec12,LOC102798044 other downstream 3065220 18772977 ~ 18810944 (-)
tfr1b NA other upstream 72362 21990017 ~ 22011086 (-)
LOC120552473 NA other upstream 196727 22114382 ~ 22120611 (-)
smpx smpx other upstream 285112 22202767 ~ 22218381 (-)
LOC120552322 cdh12,LOC108234660,LOC100695194,LOC101477368 other upstream 1483888 23401543 ~ 23519526 (-)
avl9 avl9 other upstream 2878934 24796589 ~ 24854888 (-)

Expression


Co-expression Network