LOC120552675 (LOC103356150,LOC104955777,LOC102780560)


Basic Information

Item Value
gene id LOC120552675
gene name LOC103356150,LOC104955777,LOC102780560
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 9737279 ~ 9745454 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039790880.1
TGTCAGAGAACTGACACTGGGACGTGTGTTTTTTAAACACTTCACGTGGTATGCTAAAGGTAAAGACGAGGCTCTAAGATGGCCTTGACTTTGGCAGACCGAGCCATTGGGGCCATTATTgggtcagcagcagcagatgcaGCAGCCCAGCCCATGCACTGGATCTACAATCCAGACAGGCTCAAAGAAGTTCTCTCTGATCTGGAGCCCTGTCCTGAGTTTCGGCCTCAGTCAGCCAATCCTTTTTACCGCAGGACGACGGGCGAGCAGACCTGCTACGGGGACCAGGCATATGTCCTGCTGGAGTCCCTGAGCGAGTGTGGAGATGTAAATGTGGAAGACTTGACCAAGCGCATCTACAAGTTCTTTGGCCCAGGAACAGTGTACGATCTGCCTCTCAATGATCCTTACAGGAAGAAAGAAGGTCCCAAAGCCATCCTCCCCATAGATGGCCCATGGAGAAACGCGAGCCTGAAAGCTTTCATCAGAAATGTGGATGCTGGCAAAGAAGAAACTgGCTGTGATAAGGACTGTCAGATGGACGGCGTCACTAAGCTGGCTCCGGTGGTGGCCATGTACGCTGGCCGACCTGAGATGCTGGAGAAGGTGGAGAAAGCCATACGGGTGACCCAGAACAACGACATGTGTGTCGCTGGGACACTGGCTGCAGCAAGGTTTTTGGAGCATTTCATTCTGAATGGTCCAGATCCAAATGCCCTAGATGCAGTTCTGGCCCAGTTGAATGACCCGAAGAGACAGAACCCTCAGGAGCTGGACCAGGCTACCATTGCACATATCCACCAGGTGAAGGACAACCTGGCCAAGACATCCCAACAGCTGATACCTGCTGTGTTCACAAACACATGAGCTTTGCCTGGTGCGTTCCAGGGAGCGCTTCATGGAGTCCTGAAGCTGAAACAGCTGGATGAAGCAGTCAGGGACACCATGCGCTGCGGGGGATGCACCGCCAGCCGAGCCTCCTTTATAGGAGCCTGTTTTGGGGCACAGACTGGTCTCCATGGAATCCCAGAGTCTTGGAGGAAGAGGACACTCAGATACCCTCTGCTGCTGGAGCTCGCCGAAAATGTGgtccaaaaaagtcagcaaTTGTAGTTCGTAGCTTTGATTTTTGCCctaaataaaatagttttatCTGCTATCAAGTATTTATGGAGCGCTGGATAATCAAAGCTATTTTAGAAGACTTTCTCAAGTTGCAGATGCACTTTGACACGACGATCCATGACAGTCTCATTCTAAAGTCTTGTACTGAATGAAACTTGAATCCTTTTTGCTCCGTCAAAGCTGCATCATGTAAGAAAGTGAAAGTCTGTGTGAAGTATTTATGTTGTGTTGAGGACATGGAATACATTAATACTCAGCAGCTGCATCGTACACTAGGAAACCGTCTCAAATAAAGAACCTTTATGTCGCCAACATA
>XM_039790881.1
GAGAACTGACACTGGGACGTGTGTTTTTTAAACACTTCACGTGGTATGCTAAAGGTAAAGACGAGGCTCTAAGCAGATGGCCTTGACTTTGGCAGACCGAGCCATTGGGGCCATTATTgggtcagcagcagcagatgcaGCAGCCCAGCCCATGCACTGGATCTACAATCCAGACAGGCTCAAAGAAGTTCTCTCTGATCTGGAGCCCTGTCCTGAGTTTCGGCCTCAGTCAGCCAATCCTTTTTACCGCAGGACGACGGGCGAGCAGACCTGCTACGGGGACCAGGCATATGTCCTGCTGGAGTCCCTGAGCGAGTGTGGAGATGTAAATGTGGAAGACTTGACCAAGCGCATCTACAAGTTCTTTGGCCCAGGAACAGTGTACGATCTGCCTCTCAATGATCCTTACAGGAAGAAAGAAGGTCCCAAAGCCATCCTCCCCATAGATGGCCCATGGAGAAACGCGAGCCTGAAAGCTTTCATCAGAAATGTGGATGCTGGCAAAGAAGAAACTgGCTGTGATAAGGACTGTCAGATGGACGGCGTCACTAAGCTGGCTCCGGTGGTGGCCATGTACGCTGGCCGACCTGAGATGCTGGAGAAGGTGGAGAAAGCCATACGGGTGACCCAGAACAACGACATGTGTGTCGCTGGGACACTGGCTGCAGCAAGGTTTTTGGAGCATTTCATTCTGAATGGTCCAGATCCAAATGCCCTAGATGCAGTTCTGGCCCAGTTGAATGACCCGAAGAGACAGAACCCTCAGGAGCTGGACCAGGCTACCATTGCACATATCCACCAGGTGAAGGACAACCTGGCCAAGACATCCCAACAGCTGATACCTGCTGTGTTCACAAACACATGAGCTTTGCCTGGTGCGTTCCAGGGAGCGCTTCATGGAGTCCTGAAGCTGAAACAGCTGGATGAAGCAGTCAGGGACACCATGCGCTGCGGGGGATGCACCGCCAGCCGAGCCTCCTTTATAGGAGCCTGTTTTGGGGCACAGACTGGTCTCCATGGAATCCCAGAGTCTTGGAGGAAGAGGACACTCAGATACCCTCTGCTGCTGGAGCTCGCCGAAAATGTGgtccaaaaaagtcagcaaTTGTAGTTCGTAGCTTTGATTTTTGCCctaaataaaatagttttatCTGCTATCAAGTATTTATGGAGCGCTGGATAATCAAAGCTATTTTAGAAGACTTTCTCAAGTTGCAGATGCACTTTGACACGACGATCCATGACAGTCTCATTCTAAAGTCTTGTACTGAATGAAACTTGAATCCTTTTTGCTCCGTCAAAGCTGCATCATGTAAGAAAGTGAAAGTCTGTGTGAAGTATTTATGTTGTGTTGAGGACATGGAATACATTAATACTCAGCAGCTGCATCGTACACTAGGAAACCGTCTCAAATAAAGAACCTTTATGTCGCCAACATA

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: crystallin J1B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039790880.1 True 1441 mRNA 0.50 10 9737279 9745454
XM_039790881.1 False 1439 mRNA 0.50 10 9737284 9745454

Neighbor

gene id symbol gene type direction distance location
ntng1a ntng1,LOC102781425 coding upstream 146102 9476783 ~ 9591177 (+)
prmt6 prmt6 coding upstream 274236 9460305 ~ 9463043 (+)
abca4a LOC100710805,LOC102195251 coding upstream 780739 8913264 ~ 8956540 (+)
arhgap29a LOC103374575,LOC104943220 coding upstream 824381 8873610 ~ 8912898 (+)
garem garem1 coding upstream 948578 8780406 ~ 8788701 (+)
sh3glb1a sh3glb1,LOC104955778,LOC107097676,LOC105935324,LOC107382675 coding downstream 2448 9747902 ~ 9762135 (+)
fam168b fam168b,LOC103356147 coding downstream 44858 9790312 ~ 9796422 (+)
rbbp8 NA coding downstream 51727 9797181 ~ 9805437 (+)
nsmaf nsmaf coding downstream 69352 9814806 ~ 9833063 (+)
trnac-gca_34 NA coding downstream 487032 10232486 ~ 10232557 (+)
G218690 NA non-coding upstream 71601 9614840 ~ 9665678 (+)
G218693 NA non-coding upstream 400740 9336332 ~ 9336539 (+)
LOC120551942 NA non-coding upstream 444626 9260442 ~ 9292653 (+)
G218687 NA non-coding upstream 486520 9250470 ~ 9250759 (+)
LOC120552481 NA non-coding upstream 526194 9208182 ~ 9211085 (+)
G218709 NA non-coding downstream 1575 9747029 ~ 9747273 (+)
G218710 NA non-coding downstream 1891 9747345 ~ 9747706 (+)
G218724 NA non-coding downstream 66765 9812219 ~ 9813878 (+)
G218727 NA non-coding downstream 96865 9842319 ~ 9842709 (+)
G218728 NA non-coding downstream 99500 9844954 ~ 9848196 (+)
G218695 NA other upstream 278579 9458183 ~ 9458700 (+)
G218694 LOC106675555,LOC106675866,LOC106674541,LOC106099046 other upstream 359132 9376944 ~ 9378147 (+)
rnpc3 NA other upstream 507116 9211918 ~ 9230163 (+)
G218441 LOC101478037,LOC102216221,LOC100695799 other upstream 1130701 8550783 ~ 8606578 (+)
G218848 LOC103365363 other downstream 677132 10422586 ~ 10423249 (+)
G218875 pabpn1 other downstream 742813 10488267 ~ 10494988 (+)
dcaf11 dcaf11 other downstream 770996 10516450 ~ 10526204 (+)
ipo4 ipo4,LOC102785023 other downstream 957684 10703138 ~ 10719314 (+)
zgc:101569 LOC102309791,LOC106455900,LOC102784166,LOC100695384,LOC101475816,LOC106931939 other downstream 1023921 10769375 ~ 10815975 (+)

Expression


Co-expression Network