LOC120552695


Basic Information

Item Value
gene id LOC120552695
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 5535647 ~ 5555611 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039790919.1
CTCAACAGCTTCGAGACTTTCCGCCCATTTCCGCCATTGCATCGTCTTGCTATTTGCCTCCATTTTACTctcgtgtgtatgtgtgcgtgcgcagTGTCGGTGGAAGCTGGAAAGACAACAGGACGAAAAGGACGAGAAATACCTGCAGACATGGACGGcatCAGCGATGTTGCAGTTGGAGTGAAGAGAGGATCAGACGAGCTGAGTATGTACAACAGTCCCAACTCGGGCATGAGCAGTATCAGTGACGGGGCTTCCAATGGCAGTGACAGTAAAAAGCTTAGGGTGGAGGAGGCCCCACCATCTCGTGTGCTCCACATCAGGAAGCTGCCCAACGAGGCCTCGGAGACCGAAGTCATCGCCCTCGGCTTGCCTTTTGGCAAAGTTACCAATATCCTCACACTGAAGGGGAAGAACCAGgcgTTCTTGGAGATGGGGACGGAGGAGACGGCCATCACAATGGTTAACTACTACACCACTGTAACTCCGCACATCCGCAATGTCCCTGTCTTTATTCAGTACTCCAATCACAAAGAACTCAAAACTGATGCTGGCAATCAGCGGACCCAGGCGGTGCTTCAGGCAGTGTCGGCGGTCCAGTCCGGCGGCTCACCCAGCTCAGACGTACAGGAGGCTCTGGCTGCAGCCTCCAGTCCTGTGCTGCGGATCATCATCGACAACATGTTCTACCCTGTAACGCTGGATGTGCTGCAACAGATTTTCTCCAAGTTTGGCACAGTCATGAAGATAATCACATTCACCAAGAATAATCAGTTCCAGGCCCTTCTGCAGTTCAGCGATCCTGTCAATGCACAGCAGGCCAAACTGGCACTGGATGGCCAGAACATCTACAACTCGTGTTGCACGCTGCGTATCGACTTCTCCAAGCTGGTCAACCTGAATGTCAAGTACAACAACGATAAGAGTCGCGACTACACGCGGCCCGAGCTGCCTGCTGGTGACGGCCAGCCCAGCATCGACCCCTCGGTGGCCGCCGCCTTCAGCAAAGACTCCAACTCCCTCCTCGGTAAGATCCCAGGAGCGCTGAACCCTCTGAGCGCGGCGGcggcagcagctgctgctgcagggagGGTGGCCCTCGCTGGACAGACGGGCTCCAGCGGAGTCCTGCTGGTCAGCAACCTCAACGAGGAGGTTAGtaacacacctgcacacacacacacctgtcagaCGGACCATCTACCCCCCCTACCCCAACTTCATCCCTCtgtagttttgtttttgctgtttaGGGCCGGTAGTTTCCCTGTTCTACTTTTGTCATGTCTTGAGTCTGTCATAGCGGAGACCTTAAGAAGGTCCGTGCTGGGATGTTTACGTTACATAATGTGGTGTATTTATCTGTTTTCTCTGGCTGTGAATGAGCTTCTGACAATGTCCTTGTCTCCGATGCTAACTTTCAGTGTTTTTCTAACTGTCTGCTTTCTCTCCACCTCAACGCTTCTCCTCGTGCCCGCCTGTGGCTCTAATGCAGGAGTGTACGGCGATGTCCAGAGGGTGAAGATCCTTTACAATAAGAAGGACAGCGCTCTCATTCAGATGTCCGATGGCAACCAGGCCCAGCTAGCAATGAGCCACCTGAATGGCCAAAAGATGTACGGGAAGATCATCCGGGTGACGCTGTCCAAGCACCAGACGGTGGCGCTGCCCCGTGACGGCCTGGACGACCAGGGCCTGACCAAGGACTACGCCAACTCCCCACTTCACCGCTTCAAGAAACCTGGCTCTAAGAATTTCCAGAACATCTTCCCGCCATCTGCCACCCTTCACCTCTCCAACGTCCCACAAGATGTGACGGAGGATGACCTGCGGCTGCTCTTCTCCAACGCTGGAGGCACTGTGAAAGCATTCAAGTTTTTCCAGGATCGCAAAATGGCTCTGATCCAGATGTCAACAGTGGAGGAGGCCATACAGGCCCTGATTGACCTGCACAACTACAACATGGGAGGCAGCCAGCACCTGAGAGTCTCCTTCTCCAAGTCCACCATCTAAAGATCTGACCCACAGCGTGTCGGAAACCTTACAGACTGTGTCTGGACactgggggtggggggcagtTTTGTTGTTGGGGTTTTGTTGATCCTGTCATTCCtagagagactgacatttttgactcgcatcctttttttaaagagaagaATTGAGTATGTTTCAGATACTGGATCCTCCCAGCTATTCTTAACTGTACCTCTGTATTTTTATGTAAAACACAATATTACATGATTGATTGTCCCCCTGTATGATAGTTTGATGTAGATCAGTGTTTAATTCTTTATTTAGTTGGAAAGATACAGTACTTATGTGCCTTACTTGACAATATCAACCATTTCTACAGCTGGACATGGTTACTCATTACTCTGCTATGCTTCTGAGGCACATTGGTATTGGATATTTTTGGGGGTTAGTGAGAATGCAAGCTGTGTTGTCATCCTCTAGACATTGTTACAGTTTCCCTTTTAGTTTATCAACAGAAGAGAATATTCCTGAGGCAACATGTAAGAGTTTTCCAGCATCCTGTGCCTGGCAGCTTCACTTGAATTCCATTATTCCACGAGTACGCTCAGTGTGAGACTGTTCTCCCCAGTTTTGAATTCACATATCACGGTGTGATTTCTTTATCCGTGTTTTGAAGCCTTCCATGCTTTTTCTTCTTGGCAGTGAGGTGTAATCGTCAGTGACAATGGTTTTCTAAGCATGTTTAGTTATGATAGGATCTCCCATCAGAAAGTGTTGCATGCTGTGGAAGCAGTTAGAAGAGGAGTCCACTGTGATTTTATTGTCAAGTGACCGTTTACTAGAGAGGGCTACTCAGTTGGACCAAAGTTTCTGTGCCTTTTAGTGTTCCTTGAACTCATTTGAACTAAAAGCATTAGAACACACTGACGGCCAGAATTATAAGTGGTGAGTTAattcccattttttttaaagacccaACAGGACCTCTTGCTCAGAAATAACATagtaatgtgtattttttttcttccaagtcTGATTTTTATACAGCTCAAAATGTAAGGATTTGGTATAGTTCTGAAGAGGCACAATTAAAGGATGAATTATTTTCTAACAAGGGGAGGTGCGCCTTGGTTTCCTGCTTTTTGAGTTTTCCCTCTCATGGTCTCTCTCATGTATTCTGCATTACGTCTGTAGCATGCTTAATAAAACTATTCTGTAGCGCTGCATtca

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039790919.1 True 3207 mRNA 0.49 14 5535647 5555611

Neighbor

gene id symbol gene type direction distance location
LOC120551947 NA coding upstream 646936 4881288 ~ 4888711 (+)
trnas-acu_1 NA coding upstream 677535 4858027 ~ 4858112 (+)
trnas-gcu_48 NA coding upstream 684237 4851324 ~ 4851410 (+)
trnas-gcu_47 NA coding upstream 685051 4850513 ~ 4850596 (+)
trnas-gcu_46 NA coding upstream 691530 4844032 ~ 4844117 (+)
trnas-gcu_52 NA coding downstream 14394 5570005 ~ 5570086 (+)
trnas-gcu_53 NA coding downstream 16441 5572052 ~ 5572133 (+)
trnas-gcu_54 NA coding downstream 17451 5573062 ~ 5573143 (+)
trnas-gcu_55 NA coding downstream 20510 5576121 ~ 5576202 (+)
trnas-gcu_56 NA coding downstream 22999 5578610 ~ 5578692 (+)
G218039 NA non-coding upstream 44279 5491143 ~ 5491368 (+)
G218031 NA non-coding upstream 113299 5421974 ~ 5422348 (+)
G218026 NA non-coding upstream 287961 5247295 ~ 5247686 (+)
G218025 NA non-coding upstream 301557 5233790 ~ 5234090 (+)
G218023 NA non-coding upstream 332751 5202587 ~ 5202896 (+)
G218060 NA non-coding downstream 74100 5629711 ~ 5630218 (+)
G218067 LOC107382602,LOC104967228 non-coding downstream 167197 5722808 ~ 5757421 (+)
G218083 NA non-coding downstream 397498 5953109 ~ 5954354 (+)
G218141 NA non-coding downstream 529453 6085064 ~ 6085649 (+)
G218150 NA non-coding downstream 673164 6228775 ~ 6228976 (+)
trdmt1 LOC104946219,LOC101070638 other upstream 1012941 4511713 ~ 4522706 (+)
ppp1r17 NA other upstream 1274049 4256048 ~ 4261598 (+)
chchd7 chchd7,LOC102799933 other upstream 1831272 3670420 ~ 3704375 (+)
G217723 cnn3 other upstream 1991862 3495450 ~ 3543785 (+)
LOC120552392 mtpap other upstream 2301825 3220615 ~ 3233822 (+)
LOC120552660 NA other downstream 1804995 7360606 ~ 7373347 (+)
LOC120552265 LOC101478037,LOC102216221,LOC100695799 other downstream 2967688 8523299 ~ 8596356 (+)
G218441 LOC101478037,LOC102216221,LOC100695799 other downstream 2995172 8550783 ~ 8606578 (+)
G218445 NA other downstream 3000605 8556216 ~ 8557253 (+)
rnpc3 NA other downstream 3656307 9211918 ~ 9230163 (+)

Expression


Co-expression Network