LOC120552696


Basic Information

Item Value
gene id LOC120552696
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 3315418 ~ 3343705 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039790920.1
ATAGCAGCACCATACTACTTTTCCACCAGCTGTTCACGGAATAGTGTTAACTGATCATTTCATTGCAATGGACCgtgttgtgttgctgctgctgctgtgtgttgcTCCTCTGGTTCGAGGCTACCCTTCAGGTCTAGTTACGGACAGTTGTGTTAACATGCTACCCAATCACTCTGGGCAGATCCCGCAGACGAAACCAGCACCCTTCACCGTTATGATGGACCGCAGCAGCTACAAACTCGGAGATCAGGTTAAAGTTACGCTCCAGGCTCCAGCCTCCTCACCATTCCGTGGTTTCCTGTTAGAGGCTAGAGAAGTGGGGGGTCTGTCTCCTGTGGGCTCCTTCTCCCTGATATCAACGAATGCTCGGCTCCTAACCTGCAGCCAGAAATCTaactcAGCTGTAGCCCACAATTCAGGGTCTTCTAAGACCTCCATTCAGGTGACATGGACACCAGACGCATCAGGAAACGCAAAAAACATTCAATTCCACACAACCTTCGTGCAGAATATCAACACATTCTGGGTTGATGTTACAAGTCCTGCCTTGACCTTCGCTAATGGTGTTGCTGGTGGATCTACAACTCTCCCCACTACAACAACCACAATACAGCAATTTACACCACCTAGTATCTCCAGTGCAAATTGCAGCGTCAGCAAGGTGTGTTTCAGTCAGCCTTCAAACTGTGACCCAGCCAATGCTGACTGTTATTTCATGTCAGCCCTGATGGTGTCAGGTGAAGCCATCCGCTATGAGATGAAAGGTCCTTCTAATGGATACATCGCTTTTGGATTGTCAGATGATCAGAATATGGGAAACGATGACATTTATATTTGTGGCATCGGCAGTAACGGCATGGTGGGGGTGCAGCATGCCTTTTCAACAGGACGAACATATCCAACTATTCTTCCTCTGGGGAATGTTTCTAATATAACAGCGTCAGTGCAGAACGGGGTGATCAGCTGTTCCTTCACCTCCATGAACATTATTTCTCTTACGAGGACCACTGGCTACAGCAATGCCTACTATCTCCTGTTTGTCCATGGACCCAGCAGCAATGGACAAATCCAGATCCATACAGAAACCTTCATCAGCACTAAAATGATAAACATTTCCGACCCTGGAGTTGTTCAAGATGAGGGTGTACCTAGTATCGTCAAAGCCCATGGAGCACTGATGCTGATATCCTGGATGACCCTCGGATCACTTGGAATGATGGTAGCTCGATATCTGAAAAAAACGGCCAAAGGAGAGAAAGTGATAGGCAAAGATGTCTGGTTTGTGGTCCACGTTGGCGTGATGATTCTGACAGTAGCAGCCACAATCATCGCCTTCATCCTCATCTTCTCATACGAACAAAAATGGTCTGGGGGAGTCCATCCCGTGTTAGGCTGCCTGGTCATGATCCTTTCGTTCCTCCAGCCCATTATGGCTCTGCTGCGCTGTGCACCACAACATCCACGGAGGTTTTTGTTCAACTGGTCCCATGCTTTAAATGCCCTGGTTATAAAAGTGTTAGCCGTGGCAGCCATATTCACAGGCCTGCAGTACCTTGACAGCACCACGGACCAATGGCTGGTGAAAGTGATGGGTGGTATGGTTGGCTGGGAGGCTCTGTTCTTCATTCTGTTGGATGTCCAATCAAGATGCATGGTTAACAGGACAGATACTTTGGATTTAACAGCGATGACAAATGAGGGCCTGCTGGTGGCTCTGTTCTTCCTGGGAAACTTTGCCTTTCTGGTGGCACTGCTGGTTGGAATCGGGAGTtcataagaagagcaaaaacagagCAAAGCAACCTGCTAAATCATAAGCATTTCTATTATTATTCACTGTGCCGATGTTTCAGATTTTACAATGTGTGTTTATGGGGTTTATGGGGACGGAATGTTGAGAgccagaccagaggacagagggtGAAGCTGCAGTGCGATTCTCTGAAATTTTTCCAAAGAAATTGCTCTCTcgcctacagttttcactcttcatacatcatggttggtcaaaatgtaggaaatgttGTACCGGTTgcagacatgtaactatggaatccaccgaACCTAAACTTCTGGCTCTGTTCActccaactgccgatagaaacaatgaaaacaaatatgtgttacctgctctgtgtcgcATATATTTGTCACCACACCACATCAATGCATTTGCCAGACCTTTATCTCTCTTGTGATGATAATATTTTTGCGATTTCGACCCaggtttttgaattacagaacaaacttGAGAGGTATAATTATCATAAAATGAACATGTTTGACCCATTAAAGAtactgtctccccctccctcctctactcCCTCACTGTGTAAATCACCATAGAAAcaagttctgacacacacacctcctatcATAGagactctttactgtaggctgtgttgtcctctcttttcaAAACATGTCTAACAGCAGATTTACTGATAGCCAGTGTTATTCAGATTTGCACCAAGTAGTAGGCGCACTGTCAAAATTTCTTGCGTAATTTTctagctattattattattatcattattgtaTACCtgagggctatttcacaaaaccaagataagggattaagccgggatttcccagttatcctggctcgatttagccttgactcggtttcacaaaagc
>XR_005638064.1
ATAGCAGCACCATACTACTTTTCCACCAGCTGTTCACGGAATAGTGTTAACTGATCATTTCATTGCAATGGACCgtgttgtgttgctgctgctgctgtgtgttgcTCCTCTGGTTCGAGGCTACCCTTCAGGTCTAGTTACGGACAGTTGTGTTAACATGCTACCCAATCACTCTGGGCAGATCCCGCAGACGAAACCAGCACCCTTCACCGTTATGATGGACCGCAGCAGCTACAAACTCGGAGATCAGGTTAAAGTTACGCTCCAGGCTCCAGCCTCCTCACCATTCCGTGGTTTCCTGTTAGAGGCTAGAGAAGTGGGGGGTCTGTCTCCTGTGGGCTCCTTCTCCCTGATATCAACGAATGCTCGGCTCCTAACCTGCAGCCAGAAATCTaactcAGCTGTAGCCCACAATTCAGGGTCTTCTAAGACCTCCATTCAGGTGACATGGACACCAGACGCATCAGGAAACGCAAAAAACATTCAATTCCACACAACCTTCGTGCAGAATATCAACACATTCTGGGTTGATGTTACAAGTCCTGCCTTGACCTTCGCTAATGGTGTTGCTGGTGGATCTACAACTCTCCCCACTACAACAACCACAATACAGCAATTTACACCACCTAGTATCTCCAGTGCAAATTGCAGCGTCAGCAAGGTGTGTTTCAGTCAGCCTTCAAACTGTGACCCAGCCAATGCTGACTGTTATTTCATGTCAGCCCTGATGGTGTCAGGTGAAGCCATCCGCTATGAGATGAAAGGTCCTTCTAATGGATACATCGCTTTTGGATTGTCAGATGATCAGAATATGGGAAACGATGACATTTATATTTGTGGCATCGGCAGTAACGGCATGGTGGGGGTGCAGCATGCCTTTTCAACAGGACGAACATATCCAACTATTCTTCCTCTGGGGAATGTTTCTAATATAACAGCGTCAGTGCAGAACGGGGTGATCAGCTGTTCCTTCACCTCCATGAACATTATTTCTCTTACGAGGACCACTGGCTACAGCAATGCCTACTATCTCCTGTTTGTCCATGGACCCAGCAGCAATGGACAAATCCAGATCCATACAGAAACCTTCATCAGCACTAAAATGATAAACATTTCCGACCCTGGAGTTGTTCAAGATGAGGGTGTACCTAGTATCGTCAAAGCCCATGGTCCACGTTGGCGTGATGATTCTGACAGTAGCAGCCACAATCATCGCCTTCATCCTCATCTTCTCATACGAACAAAAATGGTCTGGGGGAGTCCATCCCGTGTTAGGCTGCCTGGTCATGATCCTTTCGTTCCTCCAGCCCATTATGGCTCTGCTGCGCTGTGCACCACAACATCCACGGAGGTTTTTGTTCAACTGGTCCCATGCTTTAAATGCCCTGGTTATAAAAGTGTTAGCCGTGGCAGCCATATTCACAGGCCTGCAGTACCTTGACAGCACCACGGACCAATGGCTGGTGAAAGTGATGGGTGGTATGGTTGGCTGGGAGGCTCTGTTCTTCATTCTGTTGGATGTCCAATCAAGATGCATGGTTAACAGGACAGATACTTTGGATTTAACAGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039790920.1 True 2637 mRNA 0.46 15 3315418 3343705
XR_005638064.1 False 1571 transcript 0.48 13 3316448 3343705

Neighbor

gene id symbol gene type direction distance location
trnag-ucc_41 NA coding downstream 5848 3309499 ~ 3309570 (-)
map3k8 map3k8 coding downstream 95184 3212557 ~ 3220234 (-)
zeb1b zeb1,LOC102790219 coding downstream 455135 2801566 ~ 2860283 (-)
kcnh2b kcnh2,LOC102205662,LOC101467662 coding downstream 1113758 1823043 ~ 2201660 (-)
ift74 ift74 coding downstream 1779228 1507736 ~ 1536190 (-)
LOC120552550 NA coding upstream 2051 3345756 ~ 3399840 (-)
cnn3a cnn3,LOC102798192 coding upstream 167067 3510772 ~ 3543793 (-)
alg14 alg14,cnn3 coding upstream 211362 3555067 ~ 3570378 (-)
trnar-ucu_17 NA coding upstream 231026 3574731 ~ 3574828 (-)
trnar-ucu_18 NA coding upstream 231371 3575076 ~ 3575173 (-)
G217638 NA non-coding downstream 303826 3008274 ~ 3011592 (-)
G217636 NA non-coding downstream 333408 2981798 ~ 2982010 (-)
LOC120552330 NA non-coding downstream 347257 2943923 ~ 2968161 (-)
G217584 NA non-coding downstream 546317 2761356 ~ 2769101 (-)
G217579 arhgap12 non-coding downstream 557358 2746786 ~ 2758060 (-)
G217714 NA non-coding upstream 86948 3430653 ~ 3436326 (-)
G217717 NA non-coding upstream 117066 3460771 ~ 3461644 (-)
G217721 NA non-coding upstream 143332 3487037 ~ 3487356 (-)
G217746 NA non-coding upstream 201748 3545453 ~ 3548433 (-)
G217758 steap2 non-coding upstream 293790 3637495 ~ 3639938 (-)
svila svil other downstream 179204 2988926 ~ 3136214 (-)
scospondin sspo,LOC104950179 other downstream 896353 2214711 ~ 2419065 (-)
LOC120552169 LOC102294047,LOC102205018 other downstream 1504288 1658172 ~ 1811130 (-)
si:dkey-225n22.4 LOC104949920,LOC103365391 other downstream 1867143 1355257 ~ 1448275 (-)
f3a NA other upstream 94097 3437802 ~ 3456044 (-)
G217780 chchd7,LOC102799933 other upstream 349247 3692952 ~ 3704357 (-)
G217837 NA other upstream 592305 3936010 ~ 3941329 (-)
G218019 NA other upstream 1683800 5027505 ~ 5036704 (-)
G218085 LOC107687935 other upstream 2356524 5700229 ~ 5700576 (-)

Expression


Co-expression Network