ofcc1 (ofcc1)


Basic Information

Item Value
gene id ofcc1
gene name ofcc1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 11125133 ~ 11210500 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039790927.1
ATGCCTTATGCCAAAGGCCTTGACATTGTTCAGAGATCAGGGTCAGCCAGTGATGATCTTTTGCAGTTTGTGGAGATGGACACCTTTAGCAGTAAGTTACAGCAGAAGGCTCTGCAGCAACCTAAGCAGAAGAAATCCAAGTCGGCTGAATTTCTGATGGGTGAAGAGGAGCGAGCCGCTGTGGTGGGCATAGAAAACCCAGCCTtcgatggaggaggaagcaccGAGCTCTCTGTTCCTCCTGTTTGGCTGGGGAGAGAAATTCGAGGTGACAGGCCAGATAGCACCCTTGCAGCTCACCAAAAAAAAATGGAGCTGCAAGCCCCTGCCAAAGAAAGAGGAAATAAACGTGCCCAAAATTACTTTGACCCGTCGTCAGCAGAGCAGACAGACCCAAGGCATTGCGGGATGGCTGGGGTCAGCGCTGAAGATGAGCTGGAATTAACAATATTGAATGCTGATGAAAACAGGCTGTATCAAAGAATGGCTGCATTGCTGGATGAGGATGAAACCTTCATGAATATACCTGGTACGCCGCTAGCCTCCAGGGATGAGGAGGTGTTGGAGGTGAAGGCGGGTGATCCGGTGCTTCAGCGGCGACTGCTGCTCCACGGTGGTGGTGATGCCTCGGGCTCCAGGCCCTCCCTGGCCCATACCATTGCCAAAACCCAGGCTATGGCTGGTGCTGGGCTGGGAGCAGAGGCTGGACTCGAAGCAGGGAGGATGGTAATGGGCAGAGAGAGCACTGTAAAAATGAGGAGAGCTGAGGAGGTGATCCCCCACTACGCCCAGCAGCTGAGGGAGCGTGTGCGGCCTGACATGATCACGCTTGGCAGCCTTTCACTGCAGCAGAAAGCAGCTCAGAAGGGACAACTGAAGAAGAGTGAGTGGgcaaagagaaaggagagactGATGGCCTCCTTCACTGGGAATGTTCAGGAGCCTCATTCACAAAGCGACTGTGACGAGGCAGTGAGAGAAGCACCACAGCCCAGGCTGAACACACTGCTTCAGTCcAGCAGAACCATTGAAAGCCCATCACTAAGAGAGCTTGGGGAAGGCAAAGAGGAAGCAATGGCCAAATACGGCCAGATGACAGAGCTCCCAGAATCCTCCTCTTCAGCATCATGGCCCGCGTGGCAGGTAAACCAGAGCACAACTCCACAGCCTGTggaggtgtatgtgtgttgccTAAGAGCCACCAGAGATAAGCTACCCAGGGGCCTCTACACTGTCAGTGTGGCCCTTCACAGCCGTCTAGGGGGTCCAGCTCTGGCCTTGTGCAGTAAGACGGAGCAGCGACAATGGGCGGCTGCCACCGAGCCGATCGAGCATCGGGGACGCTTCTTTGACATTGACCTGCAGCTTAACCAGAGCCTGTTCATGatcTTACCTGCAGCCTGTGAGGTGGTCCCCTCCATGGTCCTGGTATTCCAACTGACTGCACTACCGGGAGATAGCAGCCACGTCAGCTCTGTGCTTGCATGGGGGGCATTTCCTGTTTGTGGGCCGAGTCTCAGTCTTATCCAGGGCAGGTTCAAAACGCCTCTGCTCAGGGGGGAGCCGAACACACAACTGGACCAGTTTAAAAAGATTGAAGCCGTCATCTCTTCTGATCTAGACCACTGGCTGTGCAACCTGTactttcagGTGAAGAGGCTCCCTTCTGGAACGTCTGGGGGACCAGAGCGCTGCATTACCCTATCAATACCTCCACCCAACCCCTTTGCCATGCCCCAACCTGAGGGCCATCATGACCAACCACAAGGCCAACTGCCACTCCAGCCCCCATCCCAGGCCCAGCTGCGTCCTCATCCCATTCATCCTCAGTCATATCCTCAACAGCAGCCGCGTGCGGGCCCCAGCAGCAGAGCAGGAGAGCCCGCTGTGGTACATTCTCACCGGGGGTCTCCTCTCCACCTGTCAGCTGATTCTGCCTGCTCTTCCTCATCTCTGCCAGGGAAGAATTCCTCCTCGGGAGCCATTTCTGGAAACACGGGAGAGAAGAGGGATCCATGCAGGGAGAAAGCAGAGGGTGGGATTCACTACAAGAAGAAGCCAATCAAGAAGACAAATAGCTGCGGCCCCAGCATGAGCGGCAGCAGCGCACCGCCTCGGCAGGCAGACAAACAGAAGATGCAGCCTTCAATGGAGAACCTCTCCacggaggagatggaggagtaTACATTCTCCCTACAAAACAGATCAGCACTGACTGGATCTGCTTCCTGCCCCTCACGTCTGTCCGAGCGAGCCCGCCTGGCCATCCGCATGCTGCCGTCCGAGCTGGGCCTGCCGTTGCCGTGGCAACAACAGCCGCATAGTAGCTGGTGTGGCTCCGTTCGGCAGCTCGGCCTCATtatgctgctgctggctttgATGTGGTTTGTGAGGCTCTACCTGCATTACTGCAGCCAGTGGCTCTACCTCCAGGCCATAGCAGTTCCTGTCAACAAATTCCAGTTCCACGCACACACCGTGGACCTGGTATACCAGAGTTCTCTGCTCCACACCCGGGAGGAGCTGGCGATGGTGGTGGTGGGTCCCCTGACCTTGAACACAGTAACGTTCCTGCTGGTTCTGATCAGATGGGGCTGTCAACAGATATTTGGCTCACTCCCTTCCTTCACGTCAAAGTTTATCATGGCTCAGGGAGTGTGGACAGTCCTCGACCCCCTGGCAGTCTTTGCAGTGGACGCCGTCCTCGGGCGTCTTGCCTACAGCCCAGACACACCGGTGGGTGATGCAGCCAAGCTTTACTGGCACTTCTATCGAGTTGACCAATCAGGTGCAGTGGGAGTGACCATCACTCTCTTCCTCTATGCGGTCCTCTTCCTGCTCTCCATCACCATCCTCTTCATTTACATGCTCAGATTCCACAACGATGGTCGCATGCTGGACGTCTTTCAGCGGCTCACATCCAGGGAGGGGACATACTTTCTGCCTCAAGACCTGGAGCTGTCCAATCAGGAACTGAGCTACATTGTCAAGAAGGCGGAGCAGTGGAGAGGCTTCAATGGGGAGAGGCGTAAGGTTGCAGTTTACGACTATATCTGGACGATGGAAGAGTCCTCGGCAGCCCCTGCAGCCCCTAGTGACCCCCCAAGGGAGGGGGCACCCTTACCAGTTGGTGAGACCAGCACCCATGTGGCAGTCCACACCCTGTACCTGAGTGGGCAGAAACAAAGATACAGGCACTTCCTCCGACAACCTGATGGGGCTATCATTGAGGTGATTGGTGACATGGAAGGGTTGGACAATGCAACCAGGATACTGCCCGGCCCGGGTCAGGGCTCTGCCGATCAGAGAACGGACAAGGAAGGTGCCAGTGCTGCACAGCAGCTACGGAAACGGAAGAAACTGTTTGGGCGGTCCCATCGCGTTGAGCCAGTAGGAGGAAGCGGGTGTGGCTCCAGTTTTGCACTGCAAGACCTCAACCAATGATATCAAAGCAAAGGAAGACATAGTTGGACCCTAAGCTTATGTAAGTCATCTTAATCTGTTTCAAAGCAAAGGAAGAGTTGGACCCTAAGCTTATATAAGTCATCTTAGTCTGTTTAACTTGAAGTCTCTGCAAAATACTGCAGTAGTTATCACATTTCTTGAATACTTGAATGATTGAATGATACCTTTGTATAGTGGTggaattcaaatataaaaaattataaactgACTTTTTCTCACTTGTAAGTAGCTCAACACTGATGCTTTATT

Function

symbol description
ofcc1 Orthologous to human OFCC1 (orofacial cleft 1 candidate 1).

NR:

description
PREDICTED: orofacial cleft 1 candidate gene 1 protein isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039790927.1 True 3714 mRNA 0.54 24 11125133 11210500

Neighbor

gene id symbol gene type direction distance location
slc35b3 slc35b3 coding downstream 168238 10944092 ~ 10956895 (-)
eef1e1 eef1e1,LOC102782929 coding downstream 229726 10886540 ~ 10895407 (-)
txndc5 txndc5 coding downstream 276837 10834867 ~ 10848296 (-)
rec8b NA coding downstream 381665 10725062 ~ 10743468 (-)
si:ch211-196f5.2 NA coding downstream 403111 10720158 ~ 10722022 (-)
tfap2a tfap2a coding upstream 112102 11322602 ~ 11336390 (-)
mak mak coding upstream 132241 11342741 ~ 11357345 (-)
ankrd33ba LOC103353357,LOC104951657,LOC103456515 coding upstream 602854 11813354 ~ 11828173 (-)
ropn1l ropn1l,LOC102776686 coding upstream 625238 11835738 ~ 11843639 (-)
nup58 nup58,LOC102776201 coding upstream 633895 11844395 ~ 11864737 (-)
G218986 NA non-coding downstream 408234 10715085 ~ 10716899 (-)
G218951 NA non-coding downstream 460350 10633287 ~ 10664783 (-)
LOC120552022 NA non-coding downstream 463407 10658465 ~ 10661726 (-)
G218940 NA non-coding downstream 526325 10597708 ~ 10598808 (-)
G218872 ngdn non-coding downstream 651520 10472123 ~ 10473613 (-)
G219113 NA non-coding upstream 168107 11378607 ~ 11477103 (-)
G219125 NA non-coding upstream 206232 11416732 ~ 11420755 (-)
G219130 tmem56,LOC103482516,LOC104925854,LOC107094156 non-coding upstream 230744 11441244 ~ 11445755 (-)
G219138 NA non-coding upstream 256594 11467094 ~ 11469317 (-)
G219169 NA non-coding upstream 561351 11771851 ~ 11807316 (-)
bloc1s5 bloc1s5 other downstream 256346 10864285 ~ 10868787 (-)
G218950 NA other downstream 455606 10577399 ~ 10669527 (-)
LOC120552013 NA other downstream 509912 10604320 ~ 10615221 (-)
cngb3.1 LOC103363254,LOC102786718,LOC108428960,LOC104948783 other downstream 1276892 9833462 ~ 9848241 (-)
LOC120551928 LOC104943218,LOC103369878,LOC100710535,LOC102301415,LOC101469805 other downstream 2154495 8957409 ~ 8970638 (-)
pign pign,LOC104945957,LOC102796964 other upstream 1206848 12417348 ~ 12433035 (-)
bmi1a bmi1,commd3,LOC103371470,LOC106919738,LOC103482475 other upstream 1967760 13178260 ~ 13194142 (-)
pdk3a pdk3 other upstream 2477921 13688421 ~ 13696741 (-)
sema5a sema5a other upstream 2612958 13823458 ~ 13940381 (-)
neto1l neto1,LOC102782256 other upstream 2774866 13985366 ~ 14076069 (-)

Expression


Co-expression Network