LOC120552712


Basic Information

Item Value
gene id LOC120552712
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 17713615 ~ 17715801 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039790935.1
TACGTATCTGTTTTATTCTGTCTGACTTGACACTGTTAAAGCAGTGTCTTGTTACAGTTTGAAGTCTAAAATTAGGGAGGCACCCCAACGGCAAATGACGGAAGAAGGCTAAAGTGGACAGTCTACTCGTCTCTGTGTGTAATGGTGTCAGGACTCAGGACCATGGAAACCTTCCCTACAACTTTGCTGTTGTTGATGACATGGAGGGTATTTTTAGATGTTGTCATCTTTCCGTAACAGCCCGGCTGCGCCGTTCAGTATAAAGGACTCCGTCAAAATGCAGTTGTACAACAGTGCGCTGACACACTACCCGAGATCGTCTCGCAAAGTTACATTAACTTTATTGACTGGATCTGAGCGTTTAAACGGGACAACACCGAGCTCCCCTGACGCCCATAAACCAGAGTTTACACAGCCAGGCGCAACTTCAACGACCAACGGGGACCCGGTGAGAGAGACGGCTTCTTCCGCAAACATGCCTGCTTTTTCATGTTACGAAGCTTCATCTATGAGGCCAGTTTACTTCACGTCGACTGCTGAGATATTAATCCGCAGACCTGATGGAGTGGAGAGGTCTCTGCCTGTCCATGTCATGAGGGAGTCCACGACTAAACCCCCCTCTCCAGACTCACAGCATGATAAACGTATTCTCTCTGATGACTGTGACTCAGATGTGATTGTGGACTTAATAGATCATCTTAGAAATGGGACGGATGCACTTTTTCCTGACTGCCCAGAGCTGGTTGGAAATCACCGTTTCCACAGTAACCGCATCTCTAGACCCAGAAGTGAAGAAAACAAGAGGGGGGTTGGAAATTCAAGAGAGGATGATACTGTTTCAGTGACTAATGCCCCATTCAGAAACAATGGATGGGACTTATTACATGAAGAGGAGCTAATTCCTTCCAGAGCAGATCAGCCTGAAGACCTCATAAAGGGAGATTTTAGTGATCTCAGCTGTGGCAAAGCTGCTCCAGCATCAGATGAGAAACGGGCCTTTGAGCTTAGCGTTCTGCAGGAGTCTCCACAGAGATGTcaagagagagaggacaccAACAATAAAGTCACCCGGTACCTGGCTGAAGTggagaaacaaaacaagtacCTTCAGGAGAGGCATAAATTCAGGTACCACATCATTCCAGATGGCAACTGTCTGTACAGAGCTGTGTGCAAAGCCACGTACGGGGACCAGGCGAGGCACGGGGAGCTGAGGGAGCAGACGGTGCACCACATCGCTGACCACTTGGTAGAGTTCAACCCCATCATTGAAGGGGACGTAGGAGAGTTCCTGATCAACGCAGCGCAGGATGGCGCCTGGGCGGGGTACCCGGAGCTTCTCGCCATGAGCCAGATGCTGAATGTCAACATTCACCTGACGACAGGGGGGAGTTTGGAGAGCCCCACCGTCTCCACCATGGTGCACTATCTCGGGGAGGAGGATGCTTCCAAAGCGGCTATCTGGCTGAGTTGGCTGAGCAATGGTCACTACGACGTCCTTCTGGACAAGTGTCTCTGTAACCCAGAGTATGAGGACTGGTGCAGGCACTCGCAAATGCAGAGGAAACGAGATGAGGACCTGGCAAAGTCGATGGCAGCCTCTTTATCCAAAATGTACATAGAGCAAAATGGATCTATGTGaaagaaatactgtatgttgagAATTAAAGGATGCACACTGATGCAGTAGACTGCAGAACCACTGATTCTGCTTTGTTTCTACATGcttgaaattatatttttataagaTTTATATcgtgagagaaagaaagtgcCGTGCACATACTTCGGTTTTTGTATATGCCAGGTTTGCCAAATTAGTGGCAGTGGTTTCTAAAAGTGTGGGAGCCTGTTCATTTTGATAGTTTTGGGTTATGTTGACATGATTGGAATTTTTTAATTCTGATCAGTTACTGTACATAGAAGTGcttttgagtatttatttgcCTTTTATTTGTAGACCTGCTATTTTTCTGTACTATTTGTGCTTTGTAGACCATTGCCAATTACAGGGACACTTGGTTTGCCATTTGTCACTATAGCTGCTGTCTAATATCTGTATTTCTACTCCTTTTTGCACAAAAGTCCTATCCGACAAGTCCAGAGGGTTTAAATAGTGTCTGTTCTTTTCTATTATTCCAGTTCTTTTgacaaaatatttcaaaataaagttttGAAGAAACCTGA

Function

GO: NA

KEGG:

id description
K13716 OTUD1; OTU domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039790935.1 True 2187 mRNA 0.46 1 17713615 17715801

Neighbor

gene id symbol gene type direction distance location
si:ch211-285f17.1 kiaa1217 coding downstream 1809 17592377 ~ 17711806 (-)
LOC120552117 LOC104943332 coding downstream 121323 17590394 ~ 17592292 (-)
nphp3 nphp3 coding downstream 124525 17577669 ~ 17589090 (-)
acad11 acad11,LOC102785504 coding downstream 139584 17553183 ~ 17574031 (-)
pcolce2b pcolce2 coding downstream 170626 17533066 ~ 17542989 (-)
LOC120552246 dlgap1,LOC100706187,LOC106534655 coding upstream 11264 17727065 ~ 17751798 (-)
LOC120552245 NA coding upstream 35581 17751382 ~ 17844288 (-)
shha shh,LOC102780316 coding upstream 308793 18024594 ~ 18033228 (-)
lmbr1 lmbr1,LOC102779560 coding upstream 382445 18098246 ~ 18132983 (-)
mnx1 mnx1 coding upstream 429494 18145295 ~ 18148100 (-)
G220611 NA non-coding downstream 160652 17551760 ~ 17552963 (-)
LOC120551964 NA non-coding downstream 315380 17115230 ~ 17398235 (-)
G220488 NA non-coding downstream 512281 17198391 ~ 17201334 (-)
G220445 NA non-coding downstream 815078 16898189 ~ 16898537 (-)
G220443 NA non-coding downstream 825591 16887256 ~ 16888024 (-)
G220665 NA non-coding upstream 194718 17910519 ~ 17910741 (-)
G220659 NA non-coding upstream 208770 17924571 ~ 17924957 (-)
LOC120552218 NA non-coding upstream 223457 17939258 ~ 17972500 (-)
G220687 rbm33 non-coding upstream 294982 18010783 ~ 18015252 (-)
G220685 NA non-coding upstream 304759 18020560 ~ 18021889 (-)
G220412 csrnp1,LOC104937158,LOC102793366 other downstream 838315 16874649 ~ 16875300 (-)
LOC120552205 LOC100711537,LOC102295084,LOC108230444,LOC106948898,LOC103140410 other downstream 918491 16782072 ~ 16795124 (-)
drd3 drd3 other downstream 1428880 16266303 ~ 16284735 (-)
G220124 NA other downstream 1648394 16064670 ~ 16065221 (-)
G220117 usp12,LOC107701680,LOC107705210 other downstream 1708851 16003879 ~ 16004764 (-)
si:ch73-174h16.4 LOC103364270,LOC104947970 other upstream 710961 18426762 ~ 18483776 (-)
G220833 NA other upstream 894435 18610236 ~ 18697970 (-)
LOC120552352 colec12,LOC102798044 other upstream 1057176 18772977 ~ 18810944 (-)
mettl4 mettl4 other upstream 1223112 18938913 ~ 18949495 (-)
G221048 ankh other upstream 1599790 19315591 ~ 19326894 (-)

Expression


Co-expression Network