LOC120552717 (LOC104965202,LOC103365305)


Basic Information

Item Value
gene id LOC120552717
gene name LOC104965202,LOC103365305
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 22912562 ~ 22921256 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039790941.1
ATGGGCTGTGGGAATAGTAAGGTGCTGCCTGAGGCATCCAAGAAAGGCTATGTAAGTGTGGTGCAATCGCTTGTGGCCTTTAGGAAAGCacatggtggtgatgatgatgatgatgagccaAAGAAGCATGCAGAGAAGCAAAGAGGTCTGTGGTTTTCCACCAGCGTTAAGAATCCTCAACCAGCATCAAACAGCCAGGTACTCCGAGACGGACGAAACCAGGACAGAGTTGCAAAGTATAAGGACAAGTTTGATCCACGTGTGACAGCAAGATACGACATCAAGGCTCTGATCGGTCGAGGAAGCTTCAGCCGTGTTGTGCGCGTGGAGCACAGAGCGACTCGCCAGCCCTTTTCCATTAAAATGATGGAGGTAGAGGCCCCAGAGGGCCGTGAGGTGTGCGCCTCAGAGCTGGCGGTGCTGCAGCGGGTGAGCCACTCTAATGTGATTCAGCTGATCGAGGTGTTCCAGTTCCCCCAGCGGGTTTACATGGTGCTGGAGCTGGCCACAGGTGGCGAGCTGTTGGACCGTGTCGTCTGCAGGGGCCACTTCACAGAGAGGGACGCTACCCAGGCCCTCCGAATGGTACTGGCTGGGGTGGGATACCTGCACAACCTGGGTATCACCCACAGAGACTTGAAGCCTGAGAATCTACTGTACTACCACCCCGGGAATGACTCCAGGCTGCTTGTGACCGACTTTGGGCTGGCCACTTTTGGCGGCACAGGGTCTGAGGTCTCAGGATCTGACAGAATGGGAGATCATAGAGCAGAAAGGACTTGGTCCCTCAAAACCACCTGTGGAACCCCTGAGTACATGGCCCCTGAGGTGTTGCTGAGGAAACCCTATTCCTGTGCAGTGGACATGTGGGCCCTGGGGGTGATCGCCTACATTGTGCTGAGTGGATCCATGCCGTTTGAGGACGACAGTCGCACGCGGCTCTACAGATCCATTGTGAGAGGAAAATACAGCTTCCATGGAGATCCTTGGCCCTCAGTGTCCAACCTGGCCAAGGACTTCATCCAGCGCCTGCTGCCGTCGGACCCGGCCGCCCGCCTGACCGCCGACCAAGCCATCCGTCACCCCTGGGTGGTCACCATGGCAGCCAGCTCCTCCATGAGGAACCTCCATCGATCTATTTCTCAGAACCTCAGGCAGAGGGCCTCACGCAGCTCCTCCCGGTGCCCGAGCAGCACCGCGAGCTCAGGCGGTTTCCGGTCCGGGAAGGCTATTATCGCTGGAGGGAAACCGAGAGCGGCAGCAGGGCAGAGCATCTGGACCGACTCTGCCTCAGAGAGCCATACAACATCTAGCCAGAGGCTTCCAGGAGCATCATCGCCATCCAAATAA

Function

NR:

description
PREDICTED: serine/threonine-protein kinase H1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039790941.1 True 1350 mRNA 0.57 3 22912562 22921256

Neighbor

gene id symbol gene type direction distance location
LOC120552328 epc1,LOC102784371,LOC100694393 coding downstream 24331 22841027 ~ 22888231 (-)
LOC120552530 LOC103365300 coding downstream 110813 22697027 ~ 22801749 (-)
ggh ggh,LOC100704938,LOC108234706,LOC101480685 coding downstream 215698 22691030 ~ 22696864 (-)
LOC120552124 NA coding downstream 224160 22679691 ~ 22688402 (-)
LOC120551932 klhl34 coding downstream 712516 22195236 ~ 22200046 (-)
LOC120552718 NA coding upstream 147464 23068720 ~ 23070897 (-)
LOC120552656 cdh18,LOC102310872 coding upstream 207388 23128644 ~ 23308035 (-)
cdh10a LOC102783614,LOC100705471,LOC101477094,LOC102310056,LOC102199257 coding upstream 712427 23633683 ~ 23666857 (-)
drosha drosha coding upstream 1272122 24193378 ~ 24297851 (-)
mc4r LOC104930272,LOC103365861,LOC104961440 coding upstream 1436353 24357609 ~ 24361216 (-)
G221857 NA non-coding downstream 572692 22337075 ~ 22339870 (-)
LOC120552529 NA non-coding downstream 577078 22325273 ~ 22335484 (-)
G221844 ptchd1 non-coding downstream 604328 22307488 ~ 22308234 (-)
G221843 ptchd1 non-coding downstream 611347 22300418 ~ 22301215 (-)
G221837 NA non-coding downstream 612987 22243807 ~ 22299575 (-)
G221926 NA non-coding upstream 38110 22959366 ~ 22960660 (-)
G221928 NA non-coding upstream 60708 22981964 ~ 22982351 (-)
G221933 NA non-coding upstream 118593 23039849 ~ 23040134 (-)
LOC120552653 NA non-coding upstream 149698 23070954 ~ 23071831 (-)
G221950 NA non-coding upstream 198522 23119778 ~ 23120288 (-)
smpx smpx other downstream 694181 22202767 ~ 22218381 (-)
LOC120552473 NA other downstream 791951 22114382 ~ 22120611 (-)
tfr1b NA other downstream 901476 21990017 ~ 22011086 (-)
rbis LOC101064519,LOC103367294,LOC102312013 other downstream 1690895 21217680 ~ 21221667 (-)
LOC120552536 fbxl7 other downstream 2049874 20835178 ~ 20862688 (-)
LOC120552322 cdh12,LOC108234660,LOC100695194,LOC101477368 other upstream 480287 23401543 ~ 23519526 (-)
avl9 avl9 other upstream 1875333 24796589 ~ 24854888 (-)
msl2b msl2,LOC102304425,LOC102778660 other upstream 2042161 24963417 ~ 24968106 (-)
LOC120552232 LOC103371349 other upstream 2114628 25035884 ~ 25086902 (-)
LOC120552299 NA other upstream 2635217 25556473 ~ 25562540 (-)

Expression


Co-expression Network