LOC120551943


Basic Information

Item Value
gene id LOC120551943
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 6594089 ~ 6596528 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005637937.1
TGTTATTGGTGTCTTAAAAAGTGCGAACGAGGCCATGACCATCATTTTCTTTGCTGGGTTGACAGACAAATGTTGATGAGTTTCACTGCAGTATTTCCTAAAACAAGACACTTTTGTAACGTTAACTTATTTTTGGATGAGTcagattttttatttccttttttttatgctACAAAAAAATTTGTATTTTGCCAAAAGTGCCTTTGTTATTTAGACAAATAACTCCACGACTTTTTGGTCAATGCAAAGTACGGATACTGAGGTGCCTCTCACTCTTCGGGATTTGTTTTGTGAATGAAAACCATAACAGCCTGTGCCTTAAGGACTGAATGAGCTCACCATCTGAGGCACTGATGAACTCAAatagcatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactctgttagAAAACACCCAGCAGTAATTCCCCGAAGGTATTGTGCTTATTTTGGCTGGAGTCTTCATTTTGACTGTAAACCGAAGGCTGTTTTGTCTCAGTCAGCCTCTCGTTGCCGGCAGCTCAACAATAACTGTTGGATATGTACAGTAGATAAGCTGCCCTAACGTGAGCGGCAGATCTACAAGCAGTCTCCGCCTTGTCCACATGTCGGCCTTGGATTTCATTACCCAGCGAAGGATTCCTTTCTTATCGGGGCTATTAGTTGCTGAAACGTGCCCAAACGCTCAGCTGGACCCGAATGAAGTCACGTTCACCCACGCAGTGACACAGAAGTATGTGGATCTACAGGCATGCTTTAAGGAGAAGTATGCCATATCTGTTCCAACAGAAAACAAGATGGTCTGGagtgaatgaaaaaaagaaaaagccaccACCAGCTCCCCCACTCTTTTGATCCTCAGCCCTCCCCAGCTGTTTAGCATTACATTCAAATTGCTGTTTACAAGAAGCCAGAGGATGGACTTAAAAGTTCTCCATCctcgctttttttttctttttttttacttcaaaaaTAATTTCAGTATTATGTATTTGTCGGCCAAGCAAGTGTTCAAAGTATTTGTTATTGTCTGTCTCTATATGTGTGGCCGTTTTGTTTTTGATCAGAACTTTGTACTTGGTTTCACTAAACCGTACCGCATTAAGAGCTTCTTTTGTCATCCAATGGAAAGAATCTCTTTTCTAGAAAGGACTTATGTACGGTGCATATGTTATAAACGTTTGCGGCAAACAATGCCAAGTTCACAAACTGGGGAAAATTGAGTTGGACCTACGGGAGAAACTCAAGTTGTCTCTCTATGCTGACTTTTTAATTTGATGTATGTCTTTTATGTGTGCCAAAATGTACACTCCTTCATGCATTGtgcagtttttttatttcttggaCAAACACATACTGCGTTTATGGTCAAGGACTTTGAGAGGGAGTGAAGTTGCACAAAGtgactttttgacctttttttatgttttgaatgtgcaaactgtaaaaagaaagaaagttgcACTTAGAGTTATTGGTTTTCAGTCAGAAAACACACAGCCTCCATTGACGGTGTATTTACATAAAGGTGAAGAGAAGTAAAAGAAATGAAGTACAAGCCTATGTTATTCCTGTTAGTGTTCCTATGGAGGTATAATGAAATCTATCGCACTAGCCAATCCCCAGGCACTATTTGCTTATGCAGTGGGGGTTGTGGGCTCCCACATGTGTTTTTTATACACCTGATCCAGGCAGGGTAGCTGCGGGGCAGTGTCGGGCCCGCTCCTTGTGTTTCTAATCGCACCTCTGAACCTTTGGACCACAACCCTCACACCTCACATGATACCCGCTCGCTGGGAAGAGAAAGAGCGAGGGTAGGAGGCTTCAGAGACAACAGAGCAGCCTTTGTTGTCCCTTTTAGCTGCAGTCACTCCACAACGACGACTCCAGTTCTAACAAAAGGGGTTTCCACGGCCAAGACTTTGGTACTGtacatgccttttttttttccagcacaaGCCCTACTTCCACAACCATGCTGACAAATGGAAAGCAATGGTATGTATTAAAGCCTATAAATTATTATTGCAgactttgtaaaaaaacaaagtggtgaccatagtttgttttttattgttaagTTATATAAATtgagatttttgttttgtttgttttgatagAGACTGGATTTTCAATCCAATGACCAAATGCATATCTCCATGTATTGTCCGAGTTGCTCTCATGTACAATTTCTTTTATAACAACAGTTGGTCAAAgcaaataatgaatgaataaacctctgaatgaaatgaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005637937.1 True 2336 lncRNA 0.41 2 6594089 6596528

Neighbor

gene id symbol gene type direction distance location
mkxa mkx,LOC103377095 coding upstream 59 6567730 ~ 6594030 (+)
odad2 armc4,LOC104966301,LOC108229284 coding upstream 44825 6482474 ~ 6549264 (+)
mpp7a mpp7,LOC106534949 coding upstream 140076 6280602 ~ 6454013 (+)
vopp1 vopp1 coding upstream 645237 5934020 ~ 5948852 (+)
lancl2 lancl2 coding upstream 665480 5909877 ~ 5928609 (+)
trnaw-cca_30 NA coding downstream 685178 7281706 ~ 7281777 (+)
trnaw-cca_31 NA coding downstream 692702 7289230 ~ 7289301 (+)
ccny ccny,LOC106511473 coding downstream 778970 7375498 ~ 7418872 (+)
LOC120551990 gjd4 coding downstream 829859 7426387 ~ 7429609 (+)
klf6a klf6,LOC104927255,LOC104952265 coding downstream 1162584 7759112 ~ 7763854 (+)
G218190 NA non-coding upstream 144886 6448148 ~ 6449203 (+)
G218155 NA non-coding upstream 335477 6250738 ~ 6258612 (+)
G218150 NA non-coding upstream 365113 6228775 ~ 6228976 (+)
G218141 NA non-coding upstream 508440 6085064 ~ 6085649 (+)
G218083 NA non-coding upstream 639735 5953109 ~ 5954354 (+)
G218241 itgb1,LOC104924090 non-coding downstream 44236 6640764 ~ 6648434 (+)
G218240 LOC104924090 non-coding downstream 53273 6649801 ~ 6717709 (+)
G218244 LOC104924090,LOC103366961 non-coding downstream 61293 6657821 ~ 6660277 (+)
G218270 NA non-coding downstream 354760 6951288 ~ 7008758 (+)
G218272 pard3 non-coding downstream 436401 7032929 ~ 7033231 (+)
trdmt1 LOC104946219,LOC101070638 other upstream 2071383 4511713 ~ 4522706 (+)
ppp1r17 NA other upstream 2332491 4256048 ~ 4261598 (+)
chchd7 chchd7,LOC102799933 other upstream 2889714 3670420 ~ 3704375 (+)
G217723 cnn3 other upstream 3050304 3495450 ~ 3543785 (+)
LOC120552392 mtpap other upstream 3360267 3220615 ~ 3233822 (+)
LOC120552660 NA other downstream 764078 7360606 ~ 7373347 (+)
LOC120552265 LOC101478037,LOC102216221,LOC100695799 other downstream 1926771 8523299 ~ 8596356 (+)
G218441 LOC101478037,LOC102216221,LOC100695799 other downstream 1954255 8550783 ~ 8606578 (+)
G218445 NA other downstream 1959688 8556216 ~ 8557253 (+)
rnpc3 NA other downstream 2615390 9211918 ~ 9230163 (+)

Expression


Co-expression Network