LOC120552172 (LOC106511981,LOC106522237,LOC106533251)


Basic Information

Item Value
gene id LOC120552172
gene name LOC106511981,LOC106522237,LOC106533251
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 1917208 ~ 1918027 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005637968.1
TGTCAAAGTGACTCCAATAGATGAATAGAGCCAGCCACTGGATTCCTGGAGGAAAGGCTGCGGAACGTCAGGAAGCGGCTGAGATCAACCAGCAGGTCGCAGAGCACGGCACAGACACCACCACAAACGCCAGATGATGGCGCTCTTGCAAGGGCTCTCATACCAGAATGTACCATATCAGACGAACGTGAGTCACAGCTTAAAGAATGGTTGAGAAACAATTCTCAGCCCCTCAGCCAGATAGAGACCTACATGCGGAACACGACAGTCTACAGGGCCAAGTGGATTAGGGACAACAATTGGACCATCGATCAGATCCTCGAAGAGTTCCCTCACCTAATGACCAAAGGCATGATTGCACAGGCTTGTCCTGCATGGGGATGCTGCATCAAAGTTGTTTGAAACTTGGTCATATGAAATGCCAGGAGGGGAGTCTAAAATGGTAAAGTTTATTCAAAGTAGAATACTTGCTTGCAAGTAGAGCTAATGGCTCTTAATAGCAGCTTTTTAATAGGAATTTGAATTTGTTCACTATAGACCTGTTGACTGTTGGCCTGTTGAATGTTCAGCCAGTTCATTCGTAATTGTTGTTTTGCTCTGAATGTTTTCCTACCTGAGTGATATGAACTGCACCAG

Function

NR:

description
PREDICTED: uncharacterized protein LOC106511981, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005637968.1 True 636 lncRNA 0.46 3 1917208 1918027

Neighbor

gene id symbol gene type direction distance location
ift74 ift74 coding downstream 381018 1507736 ~ 1536190 (-)
LOC120551939 NA coding downstream 584798 1321438 ~ 1332410 (-)
LOC120551945 NA coding downstream 716998 1198609 ~ 1200210 (-)
vstm2a vstm2a coding downstream 1515382 294311 ~ 401826 (-)
zeb1b zeb1,LOC102790219 coding upstream 883539 2801566 ~ 2860283 (-)
map3k8 map3k8 coding upstream 1294530 3212557 ~ 3220234 (-)
trnag-ucc_41 NA coding upstream 1391472 3309499 ~ 3309570 (-)
LOC120552550 NA coding upstream 1427729 3345756 ~ 3399840 (-)
cnn3a cnn3,LOC102798192 coding upstream 1592745 3510772 ~ 3543793 (-)
G217421 NA non-coding downstream 29791 1834213 ~ 1887417 (-)
G217330 NA non-coding downstream 562705 1354225 ~ 1354503 (-)
G217267 NA non-coding downstream 1052408 864570 ~ 864800 (-)
G217259 NA non-coding downstream 1131635 785271 ~ 785573 (-)
G217247 NA non-coding downstream 1222784 693504 ~ 694424 (-)
LOC120552173 NA non-coding upstream 151338 2069365 ~ 2070418 (-)
G217435 NA non-coding upstream 255273 2173300 ~ 2173556 (-)
G217445 NA non-coding upstream 292001 2210028 ~ 2210237 (-)
LOC120552007 NA non-coding upstream 319843 2237870 ~ 2240877 (-)
LOC120552008 NA non-coding upstream 355296 2273323 ~ 2281188 (-)
LOC120552169 LOC102294047,LOC102205018 other downstream 106078 1658172 ~ 1811130 (-)
si:dkey-225n22.4 LOC104949920,LOC103365391 other downstream 468933 1355257 ~ 1448275 (-)
scospondin sspo,LOC104950179 other upstream 296684 2214711 ~ 2419065 (-)
svila svil other upstream 1070899 2988926 ~ 3136214 (-)
LOC120552696 NA other upstream 1397391 3315418 ~ 3343705 (-)
f3a NA other upstream 1519775 3437802 ~ 3456044 (-)
G217780 chchd7,LOC102799933 other upstream 1774925 3692952 ~ 3704357 (-)

Expression


Co-expression Network