LOC120552529


Basic Information

Item Value
gene id LOC120552529
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 22325273 ~ 22335484 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638025.1
TCGCCATGCTCATGTGGGTGTGGCTTACCTGCCTCACAGAGTTTACAAAGCAGAAGTTAGAGAGACTGACAGTCGGTTTTTGGAAGAGAGACAGGTGCTTCTGAATTTAGTGACGAAGATTTTCCCTTTTCCCCATCAAGTCGTGTTAATGTTTTGTCCGCGTCTTAAATATCTACAAATGAACTGTCAACTGAGTGTGGACGCTGATTAGCGCCGTACCAAGGAGTGAGCTGGTCGGCTACGACGACAGAATTACAGAAAGCGGTGCAGTCACAAAAGCGAGGCGCTTGACCTAAGGCACAGACAAACATGGTTACAGCAGCAGAGGCATCCTGATTTCTTCCAGGGAGGATGTGGATGTACACCTCACAAATCCGCCACTGGAGGGCTCCACATCCCCACAAACATCTCGACCTGATGTGGACAAAATCAACATGAGAGGTTTGGGTCTCTCTGCGCGGCCCTGGGACTGGTCAAGCCCCAGGACtgagcgttccagccaatcacagtgCCGTCCTCGCAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638025.1 True 524 lncRNA 0.51 4 22325273 22335484

Neighbor

gene id symbol gene type direction distance location
LOC120551932 klhl34 coding downstream 125227 22195236 ~ 22200046 (-)
tnk2a LOC103363574 coding downstream 333926 21953645 ~ 21991347 (-)
tmtopsb LOC100702425,LOC101487167,LOC102300731,LOC104945569,LOC102206266,LOC103366381 coding downstream 407618 21876164 ~ 21917655 (-)
LOC120552274 NA coding downstream 605768 21716547 ~ 21719505 (-)
LOC120552272 thnsl1 coding downstream 613657 21706905 ~ 21711616 (-)
LOC120552124 NA coding upstream 344207 22679691 ~ 22688402 (-)
ggh ggh,LOC100704938,LOC108234706,LOC101480685 coding upstream 355546 22691030 ~ 22696864 (-)
LOC120552530 LOC103365300 coding upstream 361543 22697027 ~ 22801749 (-)
LOC120552328 epc1,LOC102784371,LOC100694393 coding upstream 505543 22841027 ~ 22888231 (-)
LOC120552717 LOC104965202,LOC103365305 coding upstream 577078 22912562 ~ 22921256 (-)
G221844 ptchd1 non-coding downstream 17039 22307488 ~ 22308234 (-)
G221843 ptchd1 non-coding downstream 24058 22300418 ~ 22301215 (-)
G221837 NA non-coding downstream 25698 22243807 ~ 22299575 (-)
G221832 NA non-coding downstream 79220 22223889 ~ 22246053 (-)
G221793 NA non-coding downstream 233520 22091541 ~ 22091753 (-)
G221857 NA non-coding upstream 1591 22337075 ~ 22339870 (-)
G221926 NA non-coding upstream 623882 22959366 ~ 22960660 (-)
G221928 NA non-coding upstream 646480 22981964 ~ 22982351 (-)
G221933 NA non-coding upstream 704365 23039849 ~ 23040134 (-)
LOC120552653 NA non-coding upstream 735470 23070954 ~ 23071831 (-)
smpx smpx other downstream 106892 22202767 ~ 22218381 (-)
LOC120552473 NA other downstream 204662 22114382 ~ 22120611 (-)
tfr1b NA other downstream 314187 21990017 ~ 22011086 (-)
rbis LOC101064519,LOC103367294,LOC102312013 other downstream 1103606 21217680 ~ 21221667 (-)
LOC120552536 fbxl7 other downstream 1462585 20835178 ~ 20862688 (-)
LOC120552322 cdh12,LOC108234660,LOC100695194,LOC101477368 other upstream 1066059 23401543 ~ 23519526 (-)
avl9 avl9 other upstream 2461105 24796589 ~ 24854888 (-)
msl2b msl2,LOC102304425,LOC102778660 other upstream 2627933 24963417 ~ 24968106 (-)
LOC120552232 LOC103371349 other upstream 2700400 25035884 ~ 25086902 (-)
LOC120552299 NA other upstream 3220989 25556473 ~ 25562540 (-)

Expression


Co-expression Network