LOC120552653


Basic Information

Item Value
gene id LOC120552653
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 23070954 ~ 23071831 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638060.1
CTAAGGTGCTAGCTAAAAATTTTCCCTCGTTTTCTCAGGCTTCCTCAACAAAGACCTCTGAAGAAAAGAGGATTCGTTTCTACAGAAATGGCTGCGTTTGTTTGGGTCATTAGGTGATTTTACAAAGAGCTGGGACAATGTGGCTGTGTTAGTTGATGAAACACTTATACCACAAGagcTGTGTAGCCCGATCCTACAGACCCCAACACAccagaacataaaacaaaaggtccttctaataaggaataagaacgttggaaacagACAATCCGTTCCTGAACAAAGGATCCGTAA
>XR_005638061.1
CAGCAATACCTACTAGTGGCTTCCTCAACAAAGACCTCTGAAGAAAAGAGGATTCGTTTCTACAGAAATGGCTGCGTTTGTTTGGGTCATTAGGTGATTTTACAAAGAGCTGGGACAATGTGGCTGTGTTAGTTGATGAAACACTTATACCACAAGagcTGTGTAGCCCGATCCTACAGACCCCAACACAccagaacataaaacaaaaggtccttctaataaggaataagaacgttggaaacagACAATCCGTTCCTGAACAAAGGATCCGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638060.1 True 294 lncRNA 0.42 4 23070954 23071535
XR_005638061.1 False 274 lncRNA 0.42 5 23070954 23071831

Neighbor

gene id symbol gene type direction distance location
LOC120552718 NA coding downstream 57 23068720 ~ 23070897 (-)
LOC120552717 LOC104965202,LOC103365305 coding downstream 149698 22912562 ~ 22921256 (-)
LOC120552328 epc1,LOC102784371,LOC100694393 coding downstream 182723 22841027 ~ 22888231 (-)
LOC120552530 LOC103365300 coding downstream 269205 22697027 ~ 22801749 (-)
ggh ggh,LOC100704938,LOC108234706,LOC101480685 coding downstream 374090 22691030 ~ 22696864 (-)
LOC120552656 cdh18,LOC102310872 coding upstream 56813 23128644 ~ 23308035 (-)
cdh10a LOC102783614,LOC100705471,LOC101477094,LOC102310056,LOC102199257 coding upstream 561852 23633683 ~ 23666857 (-)
drosha drosha coding upstream 1121547 24193378 ~ 24297851 (-)
mc4r LOC104930272,LOC103365861,LOC104961440 coding upstream 1285778 24357609 ~ 24361216 (-)
rnf152 rnf152 coding upstream 1588280 24660111 ~ 24723840 (-)
G221933 NA non-coding downstream 30820 23039849 ~ 23040134 (-)
G221928 NA non-coding downstream 88603 22981964 ~ 22982351 (-)
G221926 NA non-coding downstream 110294 22959366 ~ 22960660 (-)
G221857 NA non-coding downstream 731084 22337075 ~ 22339870 (-)
LOC120552529 NA non-coding downstream 735470 22325273 ~ 22335484 (-)
G221950 NA non-coding upstream 47947 23119778 ~ 23120288 (-)
G221960 NA non-coding upstream 184658 23256489 ~ 23256834 (-)
G221962 NA non-coding upstream 242857 23314688 ~ 23314893 (-)
G221999 NA non-coding upstream 601029 23672860 ~ 23673189 (-)
G222001 NA non-coding upstream 619582 23691413 ~ 23691962 (-)
smpx smpx other downstream 852573 22202767 ~ 22218381 (-)
LOC120552473 NA other downstream 950343 22114382 ~ 22120611 (-)
tfr1b NA other downstream 1059868 21990017 ~ 22011086 (-)
rbis LOC101064519,LOC103367294,LOC102312013 other downstream 1849287 21217680 ~ 21221667 (-)
LOC120552536 fbxl7 other downstream 2208266 20835178 ~ 20862688 (-)
LOC120552322 cdh12,LOC108234660,LOC100695194,LOC101477368 other upstream 329712 23401543 ~ 23519526 (-)
avl9 avl9 other upstream 1724758 24796589 ~ 24854888 (-)
msl2b msl2,LOC102304425,LOC102778660 other upstream 1891586 24963417 ~ 24968106 (-)
LOC120552232 LOC103371349 other upstream 1964053 25035884 ~ 25086902 (-)
LOC120552299 NA other upstream 2484642 25556473 ~ 25562540 (-)

Expression


Co-expression Network