trnas-aga_13


Basic Information

Item Value
gene id trnas-aga_13
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 3169085 ~ 3169166 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_1285
GTTGTcgtggccgagtggttaaggcgatggactAGAAATCCATTGGGGTCTCCCCGCGCAGGTTCGAATCCTGCCGACAACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_1285 True 82 tRNA 0.59 1 3169085 3169166

Neighbor

gene id symbol gene type direction distance location
znf438 znf438,LOC104952784 coding upstream 233516 2878512 ~ 2935569 (+)
arhgap12b arhgap12 coding upstream 396399 2679636 ~ 2772686 (+)
LOC120552716 kif5b coding upstream 496347 2624686 ~ 2672738 (+)
gfod1 gfod1,LOC100711398,LOC102233768,LOC102788772 coding upstream 553184 2567665 ~ 2615901 (+)
slc12a7b LOC103361595 coding upstream 610459 2458659 ~ 2558626 (+)
jcada kiaa1462 coding downstream 113429 3282595 ~ 3306837 (+)
abcd3a abcd3 coding downstream 232802 3401968 ~ 3433621 (+)
steap2 steap2 coding downstream 401106 3570272 ~ 3638033 (+)
arhgef4 arhgef4 coding downstream 545145 3714311 ~ 3873302 (+)
LOC120552545 NA coding downstream 731785 3900951 ~ 3935126 (+)
trnag-ucc_35 NA non-coding upstream 227 3168787 ~ 3168858 (+)
trnas-aga_12 NA non-coding upstream 1261 3167743 ~ 3167824 (+)
LOC120552406 NA non-coding upstream 6009 3155185 ~ 3163076 (+)
G217618 NA non-coding upstream 121660 3045392 ~ 3047425 (+)
G217615 NA non-coding upstream 140067 3028670 ~ 3029018 (+)
trnag-ucc_36 NA non-coding downstream 12132 3181298 ~ 3181369 (+)
trnas-aga_14 NA non-coding downstream 12438 3181604 ~ 3181685 (+)
trnag-ucc_37 NA non-coding downstream 16619 3185785 ~ 3185856 (+)
trnaa-ugc_22 NA non-coding downstream 16943 3186109 ~ 3186180 (+)
trnag-ucc_38 NA non-coding downstream 22419 3191585 ~ 3191656 (+)
G217606 svil other upstream 147443 3006283 ~ 3021642 (+)
G217377 NA other upstream 1493685 1669162 ~ 1675400 (+)
zcchc2 zcchc2 other upstream 1663870 1462750 ~ 1505215 (+)
LOC120552392 mtpap other downstream 51449 3220615 ~ 3233822 (+)
G217723 cnn3 other downstream 326284 3495450 ~ 3543785 (+)
chchd7 chchd7,LOC102799933 other downstream 501254 3670420 ~ 3704375 (+)
ppp1r17 NA other downstream 1086882 4256048 ~ 4261598 (+)
trdmt1 LOC104946219,LOC101070638 other downstream 1342547 4511713 ~ 4522706 (+)

Expression


Co-expression Network