trnas-aga_17


Basic Information

Item Value
gene id trnas-aga_17
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 3203011 ~ 3203092 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_1294
GTTGTcgtggccgagtggttaaggcgatggactAGAAATCCATTGGGGTCTCCCCGCGCAGGTTCGAATCCTGCCGACAACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_1294 True 82 tRNA 0.59 1 3203011 3203092

Neighbor

gene id symbol gene type direction distance location
znf438 znf438,LOC104952784 coding upstream 267442 2878512 ~ 2935569 (+)
arhgap12b arhgap12 coding upstream 430325 2679636 ~ 2772686 (+)
LOC120552716 kif5b coding upstream 530273 2624686 ~ 2672738 (+)
gfod1 gfod1,LOC100711398,LOC102233768,LOC102788772 coding upstream 587110 2567665 ~ 2615901 (+)
slc12a7b LOC103361595 coding upstream 644385 2458659 ~ 2558626 (+)
jcada kiaa1462 coding downstream 79503 3282595 ~ 3306837 (+)
abcd3a abcd3 coding downstream 198876 3401968 ~ 3433621 (+)
steap2 steap2 coding downstream 367180 3570272 ~ 3638033 (+)
arhgef4 arhgef4 coding downstream 511219 3714311 ~ 3873302 (+)
LOC120552545 NA coding downstream 697859 3900951 ~ 3935126 (+)
trnag-ucc_39 NA non-coding upstream 233 3202707 ~ 3202778 (+)
trnas-aga_16 NA non-coding upstream 5510 3197420 ~ 3197501 (+)
trnas-aga_15 NA non-coding upstream 11038 3191892 ~ 3191973 (+)
trnag-ucc_38 NA non-coding upstream 11355 3191585 ~ 3191656 (+)
trnaa-ugc_22 NA non-coding upstream 16831 3186109 ~ 3186180 (+)
trnag-ucc_40 NA non-coding downstream 1887 3204979 ~ 3205050 (+)
trnaa-ugc_23 NA non-coding downstream 2205 3205297 ~ 3205368 (+)
trnas-aga_18 NA non-coding downstream 2463 3205555 ~ 3205636 (+)
trnas-aga_19 NA non-coding downstream 5505 3208597 ~ 3208678 (+)
G217716 NA non-coding downstream 257679 3460771 ~ 3461648 (+)
G217606 svil other upstream 181369 3006283 ~ 3021642 (+)
G217377 NA other upstream 1527611 1669162 ~ 1675400 (+)
zcchc2 zcchc2 other upstream 1697796 1462750 ~ 1505215 (+)
LOC120552392 mtpap other downstream 17523 3220615 ~ 3233822 (+)
G217723 cnn3 other downstream 292358 3495450 ~ 3543785 (+)
chchd7 chchd7,LOC102799933 other downstream 467328 3670420 ~ 3704375 (+)
ppp1r17 NA other downstream 1052956 4256048 ~ 4261598 (+)
trdmt1 LOC104946219,LOC101070638 other downstream 1308621 4511713 ~ 4522706 (+)

Expression


Co-expression Network