trnaw-cca_32


Basic Information

Item Value
gene id trnaw-cca_32
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 7301069 ~ 7301140 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_1409
GACCTTGTGGCGCAACGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCAAATCACGTCGTGGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_1409 True 72 tRNA 0.56 1 7301069 7301140

Neighbor

gene id symbol gene type direction distance location
nrp1a nrp1 coding downstream 538113 6697248 ~ 6762956 (-)
itgb1a itgb1,LOC104924090 coding downstream 617136 6640718 ~ 6683933 (-)
LOC120552351 LOC103377033,LOC108245190,LOC101477525 coding downstream 661382 6626589 ~ 6639687 (-)
waca wac coding downstream 1023765 6247422 ~ 6277304 (-)
bambia bambi,LOC102792619 coding downstream 1060098 6235855 ~ 6240971 (-)
trnaw-cca_33 NA coding upstream 1556 7302696 ~ 7302767 (-)
trnaw-cca_34 NA coding upstream 40684 7341824 ~ 7341895 (-)
cul2 cul2,LOC102787920 coding upstream 41927 7343067 ~ 7360088 (-)
fzd8a fzd8,LOC104927254,LOC104956203 coding upstream 138800 7439940 ~ 7442699 (-)
pfkpa LOC101472402,LOC100702375,LOC102201923,LOC102790125,LOC104924699 coding upstream 560792 7861932 ~ 7888999 (-)
G218199 NA non-coding downstream 846103 6426008 ~ 6454966 (-)
G218177 NA non-coding downstream 1047093 6253146 ~ 6253976 (-)
G218176 NA non-coding downstream 1072076 6228775 ~ 6228993 (-)
G218166 NA non-coding downstream 1290004 6010337 ~ 6011065 (-)
G218165 NA non-coding downstream 1311139 5988889 ~ 5989930 (-)
G218327 NA non-coding upstream 280417 7581557 ~ 7581756 (-)
LOC120552501 NA non-coding upstream 290557 7591697 ~ 7593836 (-)
G218332 NA non-coding upstream 332431 7633571 ~ 7634213 (-)
G218335 NA non-coding upstream 379010 7680150 ~ 7680411 (-)
G218347 NA non-coding upstream 439133 7740273 ~ 7740524 (-)
G218085 LOC107687935 other downstream 1600493 5700229 ~ 5700576 (-)
G218019 NA other downstream 2264365 5027505 ~ 5036704 (-)
G217837 NA other downstream 3359740 3936010 ~ 3941329 (-)
G217780 chchd7,LOC102799933 other downstream 3596712 3692952 ~ 3704357 (-)
f3a NA other downstream 3845025 3437802 ~ 3456044 (-)
G218453 adarb2 other upstream 893789 8194929 ~ 8195879 (-)
G218471 NA other upstream 1129324 8430464 ~ 8430930 (-)
prkdc prkdc other upstream 1496641 8797781 ~ 8851726 (-)
LOC120551928 LOC104943218,LOC103369878,LOC100710535,LOC102301415,LOC101469805 other upstream 1656269 8957409 ~ 8970638 (-)
cngb3.1 LOC103363254,LOC102786718,LOC108428960,LOC104948783 other upstream 2532322 9833462 ~ 9848241 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnaw-cca-55 NA coding NC_048580.1 CM023234.2 23685678 ~ 23685749 (+)