G225447


Basic Information

Item Value
gene id G225447
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 3250042 ~ 3252294 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU305699
ctaccactttgctcgtttgaaagccatgatgtctctctctctctctgggcgggcaaagcagagaaaagggaggtaaccttgctccttatgacctcataaggagaagattcctgattggtccatctgagctttcattttctcaaaggcagagcaggatacccagggctcggtttacacctatcaccatttctagccactgggggaccataggcaggctgggggggaactcatattaatgttaaaaaacctcataaagtgacattttaacAACTGATCTGTCTCAATGGCAACAGACCAAACTCCATCCGCTAATGAAGACGTGAGATGTGGTTGAAACCTCTGGAAAAAAGTAAACAAATCGGACCTTGAGAtacgattttattttttattttaacatccaATATGTTTTGAAACTTGTGAATTTATAtttgtaaaaacacatttgccGTGTTAATTTGTATTCTTAACGTATCAAAGCTAGCACGTTAACTAGcgtaatgtgtgtgttgtgtttttctggCTCCGCCCATAGATGTAACCAGtagaaaaaggaacaaaaacaaaagcattgaCTGTTTGAATGTCCGCTGCACTTTGAATGATCAGcacttaaaatgtcttaaaatagGAAGTTCAGAAGCTTTGTGGAAATCACACGTCACCCTTTCATCTGTTTTCTACGACGgagtattgattgattgattataaTATGGAGCCGGGGAGCGTGGGTaatattctgagaaaaaaaaaaacaggataaCGAAGATTAAAGTGGAAAAGTCACAAGAAAATAAACTTGGATATTCTCTGAcatttaaaggagaactccgggcaagttttacgttaatcttgattgctTTAAATATGCGAGTACTGtcaatagcaaaaaaaaacccGAACAGAATAGGTCTTAGCAATTTTGCGCTGTTAcgagagaaaaaaatgagaaattGACAAGAAAATAACTTGAATATTAACTGAGATTAAAGTTTGGGTATCCTCTAAGATTGAAgtcttaaagctacagtgcgtagtttctttCGACCCCATGAGGAACTCCAAgttatgacaacaaaactgtctgcGCATCCGCATGatgcaagccttccgtgatcgcgcacctgtgtgtgcctgctctaccactgagccaacccggccattttcaaagctttttatgtcagttagcggtgaaggagttagctaaggctaacgctagtgatgctaagccgacgtcacgaccaaacgttagcgactGGTtgtggcagatccagagtggctctggacagatccaatagttttaaacttcaacagagtcccccccgccttcaaggaagttaacacttgtcaatggagagaggccagactctctggaccaatgaaatggaccagagtctggtaggaccaggctagtggaccagagtctggtaggaccaggttagtgtaccagagtctggtaggaccaggctagttaatggaccagagtctggtaggaccaggctaatgtaccagagtctggtaggaccaggctagttaatgtaccagagtctggtaggaccaggtagtgtaccagagtctggtaggaccaggctagttaatgtaccagagtctggtaggaccaggtagtgtaccagagtctggtaggaccaggctagttaatgtaccagagtctggtaggaccaggtagtgtaccagagtctagTAGGATCAGGCTAgttaatgtaccagagtctggtaggaccaggtagtgtaccagagtctagTAGGatcaggctaatgtaccagagtctggtaggaccaggctagtgtaccagagtctggtaggaccaggctagttaatgtaccagagtctggtaggaccaggctagttaatgtaccagagtctggtaggaccgggctagtggaccagagtctagtaggaccaggctaatgtaccagagtctggtaggaccaggtagtgtaccagagtctggtaggaccaagtagtggaccagagtctagTAGGACCAGGCTATATCATCtgggacacagccaataaacgaAAGACACACCCACCATACGAGAGAAAGTGTATCTCAAAGCAGTTTCAAACCGTTCTGAGAAAACATGTCACTCAACATGGAAACCATTTTGAGATTGAAGGTGGCCCTAGATTGGCGCTAACATAACTGTCGTAGGTTCCTCTTCCTGTTGTAAacttttgtaaaatatttaaatgtctTGAGTTATTTTAGTTTGTGACGTGTATATATAAAA

Function

GO: NA

KEGG:

id description
ko00350 Tyrosine metabolism
ko04916 Melanogenesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU305699 True 2253 lncRNA 0.44 1 3250042 3252294

Neighbor

gene id symbol gene type direction distance location
LOC120553565 NA coding upstream 132402 3110841 ~ 3117640 (+)
trnat-ugu_32 NA coding upstream 317313 2932657 ~ 2932729 (+)
trnat-ugu_31 NA coding upstream 325847 2924123 ~ 2924195 (+)
trnat-ugu_30 NA coding upstream 327476 2922494 ~ 2922566 (+)
trnat-ugu_29 NA coding upstream 328140 2921830 ~ 2921902 (+)
LOC120553725 NA coding downstream 8385 3260679 ~ 3302750 (+)
cct2 cct2 coding downstream 76656 3328950 ~ 3347986 (+)
LOC120553119 LOC104957567 coding downstream 294445 3546739 ~ 3567593 (+)
cand1 cand1 coding downstream 484188 3736482 ~ 3800595 (+)
mdm1 NA coding downstream 589702 3841996 ~ 3873319 (+)
G225448 NA non-coding upstream 719 3246367 ~ 3249323 (+)
G225481 NA non-coding upstream 22009 3227676 ~ 3228033 (+)
G225475 NA non-coding upstream 54418 3175912 ~ 3195624 (+)
G225474 NA non-coding upstream 57733 3173017 ~ 3192309 (+)
LOC120553060 NA non-coding upstream 142414 3104725 ~ 3107628 (+)
G225485 NA non-coding downstream 22434 3274728 ~ 3287337 (+)
G225489 NA non-coding downstream 54720 3307014 ~ 3308044 (+)
G225542 NA non-coding downstream 100237 3352531 ~ 3352810 (+)
G225550 NA non-coding downstream 101160 3353454 ~ 3362929 (+)
G225549 NA non-coding downstream 168189 3420483 ~ 3420957 (+)
LOC120553724 lgr5,LOC102312898,LOC102787110 other upstream 3839 3176540 ~ 3246203 (+)
G225445 NA other upstream 118740 3129944 ~ 3131302 (+)
G225394 NA other upstream 399446 2850153 ~ 2850596 (+)
G225344 NA other upstream 486456 2740384 ~ 2763586 (+)
G224811 LOC106958509,LOC107690788,LOC107671222,LOC107574171,LOC107579420 other upstream 586908 2642536 ~ 2663134 (+)
nots LOC104935800 other downstream 100554 3352848 ~ 3377335 (+)
shank3b LOC103368171,LOC102784289,LOC102309694,LOC101473766,LOC102207252,LOC103382509,LOC107374533,LOC103154279 other downstream 168069 3420363 ~ 3506467 (+)
trnat-ugu_33 NA other downstream 257786 3510080 ~ 3510152 (+)
trnat-ugu_34 NA other downstream 265256 3517550 ~ 3517622 (+)
trnat-ugu_35 NA other downstream 266167 3518461 ~ 3518533 (+)

Expression


Co-expression Network