LOC120553724 (lgr5,LOC102312898,LOC102787110)


Basic Information

Item Value
gene id LOC120553724
gene name lgr5,LOC102312898,LOC102787110
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 3176540 ~ 3246203 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU305747
TGGTAATGCTGCGATAAAATTCCCAAAAAGCACATAATAAACaaggaatttcaaaataaaagtcagtAACAGTTCTTGgactttgtgtatgtgttgcaGGTACGGAGCGAGGTGGGAGAGCAGCTTCCTGTGTCGCCTCAGcggCTTCCTGCTCACGGTCACGGCTCTGGAGCGCTGCCTGGCCGCCACCGCCGCACGCCGCCACAAACCTGACGGACACAATGGccgctcctcctcttcctcgccGCTCTCCGTCCGTCTGGCGGTCTGTCTGTGCTTCCTGTTGGGCCTGGCGGTCACACTGCCCCCCCTGGTGGCCGGACACAGCAGCACCTCCCTCTGTCTGCCGctgccttcctcctcctcctcctcctccctggcCTTCTCCGTCTCCCTGGTGCTCCTCGACTCGCTGTGCTTCCTCGCCATGACGCTCGCCTACACTCGCCTCTACTGTCGGGCCGACAAAGCTGCGCCCGCCGCCGAAGAAGAGGTGGCGCTAACTCGACATGTGGCCTGGCTGCTCTTCTCCGACTGCCTCCTCTACCTCCCCGTGGCCTTCCTCTCCTTGTCCTCGCTGCTGCGCCTCTCCGCGGCCGGGCCGGAGGCGGCTAAGGGGGTGCTGCTGCTCGTGGCGCCGCTGCCAGCCTGCGTCAACCCACTGCTTTACATCCTTTTCAACCCGCTCGCACGCCAGGAGCTGGCGGCGCTGGCCAAACGCACCCTGCG
>XM_039792417.1
cacacacacacacacacacacacacacacagacagtgagtAACCTACCCTATATAAAAGTAAACGGGGCTGACACGCTGTAGTAGTGTGAgtagagggacacacacattcacacacacacattcacacacacactccggcTCTGCCGCTGCACGCGTGCAGCCTGGAAAGCGACCAACTTGCAGTCTTCAACTCAAACAACTTGGACTTTTTATTTCACTGTTTTATATTCTCTCAATCCTTATACAGTTCAGTTAATCTCAACGGGGCTGTGACCAGAGCCCGATAACAACCTGATCCGGAtcctgttgtttgtttttttaactggaTTTGGGACTTTTAGCTTCCGAGGAGAAACCGCGGCGGACATGCCGGGGTTTGTGGCTTTGCTGGCCGTGTTTGCAGCCCTCTCGGGCGGGTCAAGGAGCTCCGTGGTCGGGGAGGAGGGGACAACAccagcggcggcggcggcgtgGGTGAACAGCTCCGCGGTGGCCCGGGTGGAGAGCTCCGGGGACGGGGACAGAGGAGCGGGGCGGGCTGGCTGCCACGGCCGCTGTCGGTGCGAGGTGGACGGGCTGCTGCACCGGGTGGACTGCTCGGACCTGGGGCTCCGGGAGGTACCGAGCAACCTGAGCGTCTTCACGTCTTACCTtgaTCTCAGCATGAATAATCTGACTGTGTTGTCCGCTGGAGCTCTGACCAACCTGCCCTTCCTGGAGGAACtGCGTTTGGCGGGAAACGATCTGTCAGTCATCCCCAGAGGAGCATTCACCGGCCTTTACAACCTGAAAGTGCTGATGCTCCAGAACAACCAGCTGATGTCTGTACCTGCTGAGGCCTTCAACAACCTGCACAACCTGCAGTCACtCCGCCTGGACGCCAATCACATCTCCAGCGTTCCCATTGGCTGTTTCTCCGGCCTGCGCTTGCTCCGTCACCTGTGGTTGGATGACAACTCTCTGACGGAGGTGCCGGTGGAGGCGCTAAGCGAGCTGCCCGCCCTGCAGGCCATGACGCTCGCCCTCAACCACATCAGCCACGTGCCAGATCACGCCTTCAGCAAGCTGGGCCGCCTGGTGGTGCTGCATCTCAACAACAATAGGATCGTTTCCATGGGAACAAACTGCTTCCACGGACTCCACAATTTGGAGACgctaGATTTGAACTACAACAGCCTGGTTGAGTTTCCGACAGCGATACGGTCCCTCAGTCACCTGAAGGAACTTGGTTTCCATAGCAACAACATCCAGTCCATCCCGGAGCACGCCTTCACGGGGAACCCCTCTCTCATCACCATatttttctACGACAACCCGATCCAGTCTGTTGGGCGATCTGCCTTTCAGAACCTACCAGAGCTACGCACACTCTCTCTGAACGGAGCAGCAGATCTCACCGAGTTTCCAGATCTGACGGGAACCAAGAGCCTGGAAAGCCtgacTATCACAGGAGCTCGGATCACCTCTCTGCCCAGTTCAGTGTGTGAGCAGCTTCCAAACCTTCAGCTGCTAGATCTCTCCTATAATCAGATCCAGACTCTTCCCAGCTTCTCCGGCTGTGAGAGCGTTCAGAAGATtgatCTGCAACATAACGAGATAGAGGAACTGGAGGAGAACACCTTCCACAGTCTGATGTCACTACGCTCTctTGATTTATCTTGGAACAGACTGTCAACAGTGAAGCCGAACTCTTTCTCTGCTCTGCCGGCTCTCACCAAACTTGACCTGTCGTCCAATCAGCTTTCgtctctgcctctgattggtctaCAGAGTTTAACTCACCTGCGATTGGCtggaaacacacagctgatggagTTAATACCCCGAGAGGACCTGCCCCGAGTCAGgGTGATGGAGCTTCCTTACGCCTTCCAGTGCTGTGCCTTTGTTTCctgtgagaggagaggaggaggtgcatcctgggagagagaggagaccgCAGACTCCACAGGGAAAGAAACGTCCGTCCACTCCAGCCAAGTAGATCAGGACTGGGAGGACTTCTTGATAGAGTTTGAAGATGACCCCAAACTTCAGCAGTCTGTCCACTGCAGCCCTGCACCAGGCCCGTTTCGGCCCTGCCTCCATCTGCTCGGCAGCTGGTTGATCCGTGGTGGCGTGTGGCTCGTTGCAGCGCTGTCATTGGTCAGCAACAGCCgcctcccctctcattcccctgctttGCAGTTCCCCCCCTCATTGACCCCCCCGCTCTGGTGTGCCGCCGGGTCGGTGGATGCCCTCCACGTTTGGCGGCGCTTTTCCTCTTTCCCTTCTTCCCTGGGGCGGCCTGATGGGAGTACaaggaatttcaaaataaaagtcagtAACAGTTCTTGgactttgtgtatgtgttgcaGGTACGGAGCGAGGTGGGAGAGCAGCTTCCTGTGTCGCCTCAGcggcttcctgtgtgtgtttgcgtcgCAGACCGGCCTCTTCCTGCTCACGGTCACGGCTCTGGAGCGCTGCCTGGCCGCCACCGCCGCACGCCGCCACAAACCTGACGGACACAATGGccgctcctcctcttcctcgccGCTCTCCGTCCGTCTGGCGGTCTGTCTGTGCTTCCTGTTGGGCCTGGCGGTCACACTGCCCCCCCTGGTGGCCGGACACAGCAGCACCTCCCTCTGTCTGCCGctgccttcctcctcctcctcctcctccctggcCTTCTCCGTCTCCCTGGTGCTCCTCGACTCGCTGTGCTTCCTCGCCATGACGCTCGCCTACACTCGCCTCTACTGTCGGGCCGACAAAGCTGCGCCCGCCGCCGAAGAAGAGGTGGCGCTAACTCGACATGTGGCCTGGCTGCTCTTCTCCGACTGCCTCCTCTACCTCCCCGTGGCCTTCCTCTCCTTGTCCTCGCTGCTGCGCCTCTCCGCGGCCGGGCCGGAGGCGGCTAAGGGGGTGCTGCTGCTCGTGGCGCCGCTGCCAGCCTGCGTCAACCCACTGCTTTACATCCTTTTCAACCCGCTCGCACGCCAGGAGCTGGCGGCGCTGGCCAAACGCACCCTGCGGGGCCGTGGCGGTGCCCAGACTctgcaggggaggaggaggagg

Function

symbol description
lgr5 Enables transmembrane signaling receptor activity. Involved in positive regulation of canonical Wnt signaling pathway. Located in nucleoplasm and trans-Golgi network membrane. Is integral component of plasma membrane.

NR:

description
PREDICTED: leucine-rich repeat-containing G-protein coupled receptor 5

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04308 LGR5, GPR49; leucine-rich repeat-containing G protein-coupled receptor 5

RNA

RNA id representative length rna type GC content exon number start site end site
TU305747 False 729 TUCP 0.63 3 3244369 3246160
XM_039792417.1 True 3067 mRNA 0.58 20 3176540 3246203

Neighbor

gene id symbol gene type direction distance location
LOC120553565 NA coding upstream 58900 3110841 ~ 3117640 (+)
trnat-ugu_32 NA coding upstream 243811 2932657 ~ 2932729 (+)
trnat-ugu_31 NA coding upstream 252345 2924123 ~ 2924195 (+)
trnat-ugu_30 NA coding upstream 253974 2922494 ~ 2922566 (+)
trnat-ugu_29 NA coding upstream 254638 2921830 ~ 2921902 (+)
LOC120553725 NA coding downstream 14476 3260679 ~ 3302750 (+)
cct2 cct2 coding downstream 82747 3328950 ~ 3347986 (+)
LOC120553119 LOC104957567 coding downstream 300536 3546739 ~ 3567593 (+)
cand1 cand1 coding downstream 490279 3736482 ~ 3800595 (+)
mdm1 NA coding downstream 595793 3841996 ~ 3873319 (+)
LOC120553060 NA non-coding upstream 68912 3104725 ~ 3107628 (+)
G225467 NA non-coding upstream 102972 3072934 ~ 3073568 (+)
G225466 NA non-coding upstream 107230 3060053 ~ 3069310 (+)
G225460 NA non-coding upstream 124908 3048148 ~ 3051632 (+)
G225432 NA non-coding upstream 212509 2963389 ~ 2964031 (+)
G225448 NA non-coding downstream 164 3246367 ~ 3249323 (+)
G225447 NA non-coding downstream 3839 3250042 ~ 3252294 (+)
G225485 NA non-coding downstream 28525 3274728 ~ 3287337 (+)
G225489 NA non-coding downstream 60811 3307014 ~ 3308044 (+)
G225542 NA non-coding downstream 106328 3352531 ~ 3352810 (+)
G225445 NA other upstream 45238 3129944 ~ 3131302 (+)
G225394 NA other upstream 325944 2850153 ~ 2850596 (+)
G225344 NA other upstream 412954 2740384 ~ 2763586 (+)
G224811 LOC106958509,LOC107690788,LOC107671222,LOC107574171,LOC107579420 other upstream 513406 2642536 ~ 2663134 (+)
kcna1b LOC107101449,LOC101167438,LOC104943874,LOC101481979,LOC102202784,LOC103382518 other upstream 682042 2479638 ~ 2494498 (+)
nots LOC104935800 other downstream 106645 3352848 ~ 3377335 (+)
shank3b LOC103368171,LOC102784289,LOC102309694,LOC101473766,LOC102207252,LOC103382509,LOC107374533,LOC103154279 other downstream 174160 3420363 ~ 3506467 (+)
trnat-ugu_33 NA other downstream 263877 3510080 ~ 3510152 (+)
trnat-ugu_34 NA other downstream 271347 3517550 ~ 3517622 (+)
trnat-ugu_35 NA other downstream 272258 3518461 ~ 3518533 (+)

Expression


Co-expression Network